PDLIM7 (PDZ and LIM domain 7) - Rat Genome Database

Name: PDLIM7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PDLIM7 (PDZ and LIM domain 7) Pan paniscus

Analyze

Symbol:

PDLIM7

Name:

PDZ and LIM domain 7

RGD ID:

11758219

Description:

ENCODES a protein that exhibits actin binding (inferred); metal ion binding (inferred); muscle alpha-actinin binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of osteoblast differentiation (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred); adherens junction (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

PDZ and LIM domain protein 7

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDLIM7 (PDZ and LIM domain 7)	NCBI	Ortholog
Mus musculus (house mouse):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC491973 (PDZ and LIM domain protein 7-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDLIM7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDLIM7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,487 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IEA,ISO)

heart development (IEA)

muscle structure development (IEA)

positive regulation of osteoblast differentiation (ISO)

Cellular Component

actin cytoskeleton (IEA)

adherens junction (IEA)

cytoplasm (IEA)

filamentous actin (IEA)

focal adhesion (IEA)

nucleoplasm (IEA)

ruffle (IEA)

stress fiber (IEA)

Z disc (IEA)

Molecular Function

actin binding (IEA)

metal ion binding (IEA)

muscle alpha-actinin binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

PDLIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,487 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl	panpan1.1		panPan2

PDLIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,606 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,910,395 - 176,924,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	171,577,128 - 171,591,311 (+)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI		HuRef
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI		T2T-CHM13v2.0

Pdlim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,645,300 - 55,661,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	55,643,608 - 55,661,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	55,497,487 - 55,513,473 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,495,795 - 55,513,676 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	55,598,848 - 55,614,800 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	55,516,395 - 55,523,056 (-)	NCBI		MGSCv36	mm8
Celera	13	56,551,572 - 56,567,561 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.06	NCBI

Pdlim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI		GRCr8
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,124,649 - 9,139,811 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	9,140,638 - 9,155,826 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	10,670,658 - 10,685,851 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,137,028 - 9,152,216 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	9,653,510 - 9,668,715 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	9,653,561 - 9,668,712 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,168,835 - 15,183,983 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	15,168,834 - 15,183,983 (+)	NCBI
Celera	17	9,203,215 - 9,218,359 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Pdlim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,718,644 - 29,734,085 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,718,830 - 29,734,085 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC491973
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	59,721,991 - 59,723,642 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	50,736,749 - 50,738,303 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	60,960,763 - 60,962,313 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	58,668,665 - 58,670,214 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	60,274,788 - 60,276,305 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	59,866,463 - 59,868,005 (+)	NCBI		UU_Cfam_GSD_1.0

Pdlim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	122,734,771 - 122,748,494 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	1,759,555 - 1,773,424 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	1,759,676 - 1,773,335 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,452,706 - 80,472,658 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,453,013 - 80,472,660 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDLIM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,494,695 - 79,508,950 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,493,927 - 79,508,714 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	10,687,138 - 10,701,197 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdlim7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	12,591,883 - 12,607,992 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	12,591,883 - 12,607,992 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003806867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000010047 ⟹ ENSPPAP00000002036

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000010076 ⟹ ENSPPAP00000002052

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000010157 ⟹ ENSPPAP00000002062

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,846,726 - 179,859,562 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000010160 ⟹ ENSPPAP00000002064

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,846,726 - 179,859,562 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000010234 ⟹ ENSPPAP00000002080

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,853,536 - 179,859,562 (-)	Ensembl

RefSeq Acc Id:

XM_003806866 ⟹ XP_003806914

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,483 (-)	NCBI
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI

Sequence:

show sequence

GGGGTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCC
TGGCCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCAC
CTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCAC
TCCTGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGT
GAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCC
TCAGCCTGGGCCTGAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCTCCGCCCCCGC
CGCGGACCCTCCGCGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTT
GGGGCGCCCCCGCCCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCC
CAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGG
CCAGTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGAT
GAGGAGCACCTGAAGAAATCAAGCCAGGTGCCCGGGACGGAAGCCCCAGCCTCATCTACACCCC
AGGAGCCCTGGCCTGGCCCTACCGCCCCCAGCCCTACCAGCCGCCCGCCCTGGGCCGTGGACCC
TGCGTTTGCCGAGCGCTATGCCCCGGACAAAACGAGCACAGTGCTGACCCGGCACAGCCAGCCG
GCCACGCCCACGCCGCTGCAGAGCCGCACCTCCATTGTGCAGGCAGCTGCCGGAGGGGTGCCAG
GAGGGGGCAGCAACAACGGCAAGACTCCCGTGTGTCACCAGTGCCACAAGGTCATCCGGGGCCG
CTACCTGGTGGCGCTGGGCCACGCGTACCACCCGGAGGAGTTTGTGTGTAGCCAGTGTGGGAAG
GTCCTGGAAGAGGGTGGCTTCTTTGAGGAAAAGGGCGCCATCTTCTGCCCACCATGCTATGACG
TGCGCTATGCACCCAGCTGTGCCAAGTGCAAGAAGAAGATTACAGGCGAGATCATGCACGCCCT
GAAGATGACCTGGCACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGG
GCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGACTATGAGAAGATGTTTGGCACGA
AATGCCATGGCTGTGACTTCAAGATCGACGCTGAGGACCGTTTCCTGGAGGCCCTGGGCTTCAG
CTGGCATGACACCTGCTTCGTCTGTGCGATATGTCAGATCAACCTGGAAGGAAAGACCTTCTAC
TCCAAGAAGGACAGGCCTCTCTGCAAGAGCCATGCCTTCTCTCATGTGTGAGCCCCTTCTGCCC
ACAGCTGCCGCGGTGGCCCCTAGCCTGAGGGGCCTGGAGTCGTGGCCCTGCATTTCTGGGTAGG
GCTGGCAATGGTTGCCTTAACCCTGGCTCCTGGCCCGAGCCTGGGGTTCCCTGGGCCCTGCCCC
ACCCCCCTTATCCTCCCACCCCACTCCCTCCACCACCACAGCACACCGGTGCTGGCCACACCGG
CCCCCTTTCACCTCCAGTGCCACAATAAACCTGTACCCAGCTGTG

hide sequence

RefSeq Acc Id:

XM_003806867 ⟹ XP_003806915

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,483 (-)	NCBI
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI

Sequence:

show sequence

GGGGTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCC
TGGCCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCAC
CTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCAC
TCCTGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGT
GAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCC
TCAGCCTGGGCCTGAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGTGCAGACCCCTGA
CAAACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAG
GACTGGCGGCCGCGGCCGGGGACAGGCCAGTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAG
GCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAGAAATCAAGCCAGGTGCCCGGGAC
GGAAGCCCCAGCCTCATCTACACCCCAGGAGCCCTGGCCTGGCCCTACCGCCCCCAGCCCTACC
AGCCGCCCGCCCTGGGCCGTGGACCCTGCGTTTGCCGAGCGCTATGCCCCGGACAAAACGAGCA
CAGTGCTGACCCGGCACAGCCAGCCGGCCACGCCCACGCCGCTGCAGAGCCGCACCTCCATTGT
GCAGGCAGCTGCCGGAGGGGTGCCAGGAGGGGGCAGCAACAACGGCAAGACTCCCGTGTGTCAC
CAGTGCCACAAGGTCATCCGGGGCCGCTACCTGGTGGCGCTGGGCCACGCGTACCACCCGGAGG
AGTTTGTGTGTAGCCAGTGTGGGAAGGTCCTGGAAGAGGGTGGCTTCTTTGAGGAAAAGGGCGC
CATCTTCTGCCCACCATGCTATGACGTGCGCTATGCACCCAGCTGTGCCAAGTGCAAGAAGAAG
ATTACAGGCGAGATCATGCACGCCCTGAAGATGACCTGGCACGTGCACTGCTTTACCTGTGCTG
CCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCG
AGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGAGGAC
CGTTTCCTGGAGGCCCTGGGCTTCAGCTGGCATGACACCTGCTTCGTCTGTGCGATATGTCAGA
TCAACCTGGAAGGAAAGACCTTCTACTCCAAGAAGGACAGGCCTCTCTGCAAGAGCCATGCCTT
CTCTCATGTGTGAGCCCCTTCTGCCCACAGCTGCCGCGGTGGCCCCTAGCCTGAGGGGCCTGGA
GTCGTGGCCCTGCATTTCTGGGTAGGGCTGGCAATGGTTGCCTTAACCCTGGCTCCTGGCCCGA
GCCTGGGGTTCCCTGGGCCCTGCCCCACCCCCCTTATCCTCCCACCCCACTCCCTCCACCACCA
CAGCACACCGGTGCTGGCCACACCGGCCCCCTTTCACCTCCAGTGCCACAATAAACCTGTACCC
AGCTGTG

hide sequence

RefSeq Acc Id:

XM_008958377 ⟹ XP_008956625

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,483 (-)	NCBI
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI

Sequence:

show sequence

GGGGTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCC
TGGCCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCAC
CTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCAC
TCCTGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGT
GAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCC
TCAGCCTGGGCCTGAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCCCCACCTTACC
CTGCCCGCCCGCCCTGCCCGGCTGTGTCTCTGCCCAGGCCTCCGCCCCCGCCGCGGACCCTCCG
CGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTTGGGGCGCCCCCGC
CCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAA
GCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGGCCAGTCGCGTTCC
TTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGA
AGAAATCAAGCCAGGTGCCCGGGACGGAAGCCCCAGCCTCATCTACACCCCAGGAGCCCTGGCC
TGGCCCTACCGCCCCCAGCCCTACCAGCCGCCCGCCCTGGGCCGTGGACCCTGCGTTTGCCGAG
CGCTATGCCCCGGACAAAACGAGCACAGTGCTGACCCGGCACAGCCAGCCGGCCACGCCCACGC
CGCTGCAGAGCCGCACCTCCATTGTGCAGGCAGCTGCCGGAGGGGTGCCAGGAGGGGGCAGCAA
CAACGGCAAGACTCCCGTGTGTCACCAGTGCCACAAGGTCATCCGGGGCCGCTACCTGGTGGCG
CTGGGCCACGCGTACCACCCGGAGGAGTTTGTGTGTAGCCAGTGTGGGAAGGTCCTGGAAGAGG
GTGGCTTCTTTGAGGAAAAGGGCGCCATCTTCTGCCCACCATGCTATGACGTGCGCTATGCACC
CAGCTGTGCCAAGTGCAAGAAGAAGATTACAGGCGAGATCATGCACGCCCTGAAGATGACCTGG
CACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGG
AGGAGGGCGTGCCCTATTGCGAGCGAGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTG
TGACTTCAAGATCGACGCTGAGGACCGTTTCCTGGAGGCCCTGGGCTTCAGCTGGCATGACACC
TGCTTCGTCTGTGCGATATGTCAGATCAACCTGGAAGGAAAGACCTTCTACTCCAAGAAGGACA
GGCCTCTCTGCAAGAGCCATGCCTTCTCTCATGTGTGAGCCCCTTCTGCCCACAGCTGCCGCGG
TGGCCCCTAGCCTGAGGGGCCTGGAGTCGTGGCCCTGCATTTCTGGGTAGGGCTGGCAATGGTT
GCCTTAACCCTGGCTCCTGGCCCGAGCCTGGGGTTCCCTGGGCCCTGCCCCACCCCCCTTATCC
TCCCACCCCACTCCCTCCACCACCACAGCACACCGGTGCTGGCCACACCGGCCCCCTTTCACCT
CCAGTGCCACAATAAACCTGTACCCAGCTGTG

hide sequence

RefSeq Acc Id:

XM_008958386 ⟹ XP_008956634

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,574,071 - 172,581,487 (-)	NCBI
NHGRI_mPanPan1	5	170,713,612 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,791,463 - 172,798,874 (-)	NCBI
PanPan1.1	5	179,853,285 - 179,860,619 (-)	NCBI

Sequence:

show sequence

GGGGTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCC
TGGCCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCAC
CTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCAC
TCCTGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGT
GAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCC
TCAGCCTGGGCCTGAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCTCCGCCCCCGC
CGCGGACCCTCCGCGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTT
GGGGCGCCCCCGCCCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCC
CAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGG
CCAGTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGAT
GAGGAGCACCTGAAGAAATCAAGGGAAAAGTATGTCCTGGAGCTGCAGAGCCCACGCTACACCC
GCCTCCGGGACTGGCACCACCAGCGCTCTGCCCACGTGCTCAACGTGCAGTCGTAGCCCGGCCC
TCTCCAGCCGGCTGCCCTCTCTGCCTCCCTCTTTCTGTTCCTCCTGCCCAGGGCACCCCCTTAG
TGCCTGCAGCTTCTGCCTACCTCACCCCCCCTTTCCTGCCCCTGGCCTGAGCCTCCTGCTGGCC
TGGCCCTGGCTGCCCACCTGGGTTCATCTGACACTGCCTTCCCTCTTTGCCCTGTGGTACTGCT
GTCTGCCAGGTCTGTGCTGCCTTGGGCATGGAATAAACATTCTCAGCCCTG

hide sequence

RefSeq Acc Id:

XM_034961083 ⟹ XP_034816974

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,483 (-)	NCBI
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI

RefSeq Acc Id:

XM_034961084 ⟹ XP_034816975

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,483 (-)	NCBI
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003806914	(Get FASTA)	NCBI Sequence Viewer
	XP_003806915	(Get FASTA)	NCBI Sequence Viewer
	XP_008956625	(Get FASTA)	NCBI Sequence Viewer
	XP_008956634	(Get FASTA)	NCBI Sequence Viewer
	XP_034816974	(Get FASTA)	NCBI Sequence Viewer
	XP_034816975	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000002036
	ENSPPAP00000002036.1
	ENSPPAP00000002052
	ENSPPAP00000002052.1
	ENSPPAP00000002062.1
	ENSPPAP00000002064.1
	ENSPPAP00000002080
	ENSPPAP00000002080.1

RefSeq Acc Id:	XP_003806915 ⟸ XM_003806867
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R8ZAK1 (UniProtKB/TrEMBL), A0A2R8ZB39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLRPLVPDASKQRLMENTEDWRPRPGTG QSRSFRILAHLTGTEFMQDPDEEHLKKSSQVPGTEAPASSTPQEPWPGPTAPSPTSRPPWAVDP AFAERYAPDKTSTVLTRHSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGR YLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHAL KMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAEDRFLEALGFS WHDTCFVCAICQINLEGKTFYSKKDRPLCKSHAFSHV hide sequence

RefSeq Acc Id:	XP_003806914 ⟸ XM_003806866
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R8ZAI4 (UniProtKB/TrEMBL), A0A2R8ZB39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGAPPPADSA PQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEHLKKSSQ VPGTEAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQSR TSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFE EKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVP YCERDYEKMFGTKCHGCDFKIDAEDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDRPLCK SHAFSHV hide sequence

RefSeq Acc Id:	XP_008956625 ⟸ XM_008958377
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZB39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKAPTLPCPPALPGCVSAQASAPAADPPRYTFAPSVS LNKTARPFGAPPPADSAPQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTG TEFMQDPDEEHLKKSSQVPGTEAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAPDKTST VLTRHSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEE FVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHVHCFTCAA CKTPIRNRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAEDRFLEALGFSWHDTCFVCAICQI NLEGKTFYSKKDRPLCKSHAFSHV hide sequence

RefSeq Acc Id:	XP_008956634 ⟸ XM_008958386
- Peptide Label:	isoform X6
- UniProtKB:	A0A2R8ZEN8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGAPPPADSA PQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEHLKKSRE KYVLELQSPRYTRLRDWHHQRSAHVLNVQS hide sequence

RefSeq Acc Id:	XP_034816975 ⟸ XM_034961084
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZB39 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034816974 ⟸ XM_034961083
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZB39 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000002052 ⟸ ENSPPAT00000010076

RefSeq Acc Id:

ENSPPAP00000002036 ⟸ ENSPPAT00000010047

RefSeq Acc Id:

ENSPPAP00000002062 ⟸ ENSPPAT00000010157

RefSeq Acc Id:

ENSPPAP00000002064 ⟸ ENSPPAT00000010160

RefSeq Acc Id:

ENSPPAP00000002080 ⟸ ENSPPAT00000010234

Protein Domains

LIM zinc-binding PDZ

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000008701	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000010047.1	UniProtKB/TrEMBL
	ENSPPAT00000010076.1	UniProtKB/TrEMBL
	ENSPPAT00000010157.1	UniProtKB/TrEMBL
	ENSPPAT00000010160.1	UniProtKB/TrEMBL
	ENSPPAT00000010234.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	pps:100967941	UniProtKB/TrEMBL
NCBI Gene	PDLIM7	ENTREZGENE
PANTHER	PDZ AND LIM DOMAIN PROTEIN 7	UniProtKB/TrEMBL
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF50156	UniProtKB/TrEMBL
UniProt	A0A2R8ZAI4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZAK1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZAL0_PANPA	UniProtKB/TrEMBL
	A0A2R8ZB39	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZEN8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar