Faim2 (Fas apoptotic inhibitory molecule 2) - Rat Genome Database

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Gene: Faim2 (Fas apoptotic inhibitory molecule 2) Rattus norvegicus
Analyze
Symbol: Faim2
Name: Fas apoptotic inhibitory molecule 2
RGD ID: 628744
Description: Predicted to be involved in cerebellar cortex development and regulation of apoptotic process. Predicted to act upstream of or within negative regulation of extrinsic apoptotic signaling pathway via death domain receptors; negative regulation of neuron apoptotic process; and response to ischemia. Predicted to be located in membrane raft. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and membrane. Biomarker of chronic obstructive pulmonary disease. Orthologous to human FAIM2 (Fas apoptotic inhibitory molecule 2); PARTICIPATES IN FasL mediated signaling pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Lfg; lifeguard; LOC102551901; MGC105316; neural membrane protein 35; NMP35; protein lifeguard 2; protein lifeguard 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,512,095 - 132,539,192 (-)NCBIGRCr8
mRatBN7.27130,632,368 - 130,659,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,633,348 - 130,659,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,436,973 - 132,462,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,662,553 - 134,688,359 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,575,068 - 134,600,878 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,158,769 - 141,185,781 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,157,963 - 141,185,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,663,275 - 115,689,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,246,372 - 138,272,190 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,322,809 - 138,348,627 (-)NCBI
Celera7127,115,377 - 127,141,090 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Neural membrane protein 35/Lifeguard is localized at postsynaptic sites and in dendrites. Schweitzer B, etal., Brain Res Mol Brain Res 2002 Oct 30;107(1):47-56.
8. Neural membrane protein 35 (NMP35): a novel member of a gene family which is highly expressed in the adult nervous system. Schweitzer B, etal., Mol Cell Neurosci 1998 Aug;11(5-6):260-73.
9. MiR-3202 protects smokers from chronic obstructive pulmonary disease through inhibiting FAIM2: An in vivo and in vitro study. Shen W, etal., Exp Cell Res. 2018 Jan 15;362(2):370-377. doi: 10.1016/j.yexcr.2017.11.038. Epub 2017 Dec 5.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16033886   PMID:17635665   PMID:21209208   PMID:21957071   PMID:22627920   PMID:22871113   PMID:23097042   PMID:26582200  


Genomics

Comparative Map Data
Faim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,512,095 - 132,539,192 (-)NCBIGRCr8
mRatBN7.27130,632,368 - 130,659,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,633,348 - 130,659,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,436,973 - 132,462,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,662,553 - 134,688,359 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,575,068 - 134,600,878 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,158,769 - 141,185,781 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,157,963 - 141,185,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,663,275 - 115,689,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,246,372 - 138,272,190 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,322,809 - 138,348,627 (-)NCBI
Celera7127,115,377 - 127,141,090 (-)NCBICelera
Cytogenetic Map7q36NCBI
FAIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,866,896 - 49,903,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,866,896 - 49,904,217 (-)EnsemblGRCh38hg38GRCh38
GRCh371250,260,679 - 50,297,683 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,546,947 - 48,583,987 (-)NCBINCBI36Build 36hg18NCBI36
Build 341248,546,946 - 48,583,987NCBI
Celera1249,056,734 - 49,093,776 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,291,842 - 47,330,172 (-)NCBIHuRef
CHM1_11250,227,016 - 50,263,951 (-)NCBICHM1_1
T2T-CHM13v2.01249,829,908 - 49,867,294 (-)NCBIT2T-CHM13v2.0
Faim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,394,886 - 99,432,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,394,893 - 99,426,046 (-)EnsemblGRCm39 Ensembl
GRCm381599,497,005 - 99,534,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,497,012 - 99,528,165 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,327,436 - 99,358,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,325,039 - 99,356,051 (-)NCBIMGSCv36mm8
Celera15101,652,607 - 101,683,625 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Faim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547466,777 - 501,490 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547467,331 - 501,172 (-)NCBIChiLan1.0ChiLan1.0
FAIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,283,833 - 44,320,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,280,595 - 44,316,871 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,850,588 - 38,886,614 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,744,705 - 39,780,702 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,744,700 - 39,780,702 (+)Ensemblpanpan1.1panPan2
FAIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,802,711 - 4,831,230 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,798,235 - 4,827,917 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,426,513 - 41,459,677 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,847,381 - 4,880,528 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,847,346 - 4,880,527 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,813,057 - 4,846,157 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,802,365 - 4,835,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,821,388 - 41,854,554 (-)NCBIUU_Cfam_GSD_1.0
Faim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,588,905 - 65,620,783 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,544,003 - 7,576,315 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,544,047 - 7,575,922 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,779,334 - 15,812,543 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,779,329 - 15,813,029 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,100,437 - 46,131,046 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,099,895 - 46,131,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,989,447 - 200,026,442 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Faim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,386,647 - 2,420,274 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,386,995 - 2,418,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Faim2
77 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:90
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000048934
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
RH135379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,633,264 - 130,633,447 (+)MAPPERmRatBN7.2
Rnor_6.07141,159,667 - 141,159,849NCBIRnor6.0
Rnor_5.0X115,663,193 - 115,663,375UniSTSRnor5.0
RGSC_v3.47138,246,290 - 138,246,472UniSTSRGSC3.4
Celera7127,115,294 - 127,115,477UniSTS
RH 3.4 Map71064.7UniSTS
Cytogenetic Map7q36UniSTS
RH144326  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,637,976 - 130,638,192 (+)MAPPERmRatBN7.2
Rnor_6.07141,164,379 - 141,164,594NCBIRnor6.0
Rnor_6.07139,042,493 - 139,042,708NCBIRnor6.0
Rnor_5.07138,662,899 - 138,663,114UniSTSRnor5.0
Rnor_5.0X115,667,905 - 115,668,120UniSTSRnor5.0
RGSC_v3.47138,251,002 - 138,251,217UniSTSRGSC3.4
Celera7127,120,007 - 127,120,222UniSTS
RH 3.4 Map71077.3UniSTS
Cytogenetic Map7q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 44
Low 1 1 24 1 9 11
Below cutoff 2 1 8 1 9 1 3 4 2 24 17 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000072309   ⟹   ENSRNOP00000064487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7130,633,348 - 130,659,168 (-)Ensembl
Rnor_6.0 Ensembl7139,047,263 - 139,063,752 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085033   ⟹   ENSRNOP00000075485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7141,157,963 - 141,185,710 (-)Ensembl
RefSeq Acc Id: NM_144756   ⟹   NP_653357
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,512,209 - 132,538,026 (-)NCBI
mRatBN7.27130,633,347 - 130,659,168 (-)NCBI
Rnor_6.07141,159,749 - 141,185,567 (-)NCBI
Rnor_5.0X115,663,275 - 115,689,093 (-)NCBI
RGSC_v3.47138,246,372 - 138,272,190 (-)RGD
Celera7127,115,377 - 127,141,090 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594665   ⟹   XP_017450154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87132,512,095 - 132,539,192 (-)NCBI
mRatBN7.27130,632,368 - 130,659,346 (-)NCBI
Rnor_6.07141,158,769 - 141,185,781 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_653357   ⟸   NM_144756
- UniProtKB: O88407 (UniProtKB/Swiss-Prot),   A6KCF9 (UniProtKB/TrEMBL),   M0R531 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450154   ⟸   XM_017594665
- Peptide Label: isoform X1
- UniProtKB: M0R531 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075485   ⟸   ENSRNOT00000085033
RefSeq Acc Id: ENSRNOP00000064487   ⟸   ENSRNOT00000072309

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R531-F1-model_v2 AlphaFold M0R531 1-310 view protein structure
AF-O88407-F1-model_v2 AlphaFold O88407 1-316 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628744 AgrOrtholog
BioCyc Gene G2FUF-32068 BioCyc
Ensembl Genes ENSRNOG00000045554 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000053258 Ensembl
  ENSRNOG00055029574 UniProtKB/Swiss-Prot
  ENSRNOG00060006516 UniProtKB/Swiss-Prot
  ENSRNOG00065022426 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000072309 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000072309.3 UniProtKB/Swiss-Prot
  ENSRNOT00055051238 UniProtKB/Swiss-Prot
  ENSRNOT00060010680 UniProtKB/Swiss-Prot
  ENSRNOT00065038274 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7314068 IMAGE-MGC_LOAD
InterPro Bax_inhibitor_1-related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:246274 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105316 IMAGE-MGC_LOAD
NCBI Gene 246274 ENTREZGENE
PANTHER PROTEIN LIFEGUARD 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23291 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bax1-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Faim2 PhenoGen
RatGTEx ENSRNOG00000045554 RatGTEx
  ENSRNOG00000053258 RatGTEx
  ENSRNOG00055029574 RatGTEx
  ENSRNOG00060006516 RatGTEx
  ENSRNOG00065022426 RatGTEx
UniProt A6KCF9 ENTREZGENE, UniProtKB/TrEMBL
  LFG2_RAT UniProtKB/Swiss-Prot
  M0R531 ENTREZGENE, UniProtKB/TrEMBL
  O88407 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Faim2  Fas apoptotic inhibitory molecule 2  LOC102551901  protein lifeguard 2-like  Data merged from RGD:7636626 737654 PROVISIONAL
2013-12-18 LOC102551901  protein lifeguard 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Faim2  Fas apoptotic inhibitory molecule 2  Lfg  lifeguard  Symbol and Name updated 1299863 APPROVED
2003-02-27 Lfg  lifeguard      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain and spinal cord 633222
gene_homology sequence highly homologous to glutamate-binding protein (GBP) 633222