Mbnl1 (muscleblind-like splicing regulator 1) - Rat Genome Database

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Gene: Mbnl1 (muscleblind-like splicing regulator 1) Rattus norvegicus
Analyze
Symbol: Mbnl1
Name: muscleblind-like splicing regulator 1
RGD ID: 628668
Description: Enables regulatory region RNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasmic stress granule and nucleus. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human MBNL1 (muscleblind like splicing regulator 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Mbnl; muscleblind-like; muscleblind-like (Drosophila); muscleblind-like 1; muscleblind-like 1 (Drosophila); muscleblind-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82146,789,570 - 146,964,136 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2146,789,596 - 146,964,134 (+)EnsemblGRCr8
mRatBN7.22144,639,819 - 144,814,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2144,670,285 - 144,814,368 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2151,355,648 - 151,467,147 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02149,455,585 - 149,566,848 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02144,087,992 - 144,199,253 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02150,698,248 - 150,867,791 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)Ensemblrn6Rnor6.0
Rnor_5.02170,117,575 - 170,293,074 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42149,891,873 - 150,004,089 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2139,098,823 - 139,210,061 (+)NCBICelera
RGSC_v3.12149,942,293 - 149,942,359 (+)NCBI
Cytogenetic Map2q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
brequinar  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
glyphosate  (EXP)
hydrogen cyanide  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ketoconazole  (EXP)
kojic acid  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
testosterone  (EXP)
testosterone undecanoate  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytoplasmic stress granule  (IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Dynamic integration of splicing within gene regulatory pathways. Braunschweig U, etal., Cell. 2013 Mar 14;152(6):1252-69. doi: 10.1016/j.cell.2013.02.034.
2. Gene expression profiling in Brodmann's area 46 from subjects with schizophrenia. Dean B, etal., Aust N Z J Psychiatry. 2007 Apr;41(4):308-20.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3. Gooding C, etal., Nucleic Acids Res. 2013 May;41(9):4765-82. doi: 10.1093/nar/gkt168. Epub 2013 Mar 19.
5. Developmental expression of mouse muscleblind genes Mbnl1, Mbnl2 and Mbnl3. Kanadia RN, etal., Gene Expr Patterns 2003 Aug;3(4):459-62.
6. A muscleblind knockout model for myotonic dystrophy. Kanadia RN, etal., Science 2003 Dec 12;302(5652):1978-80.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Identification of RBPMS as a mammalian smooth muscle master splicing regulator via proximity of its gene with super-enhancers. Nakagaki-Silva EE, etal., Elife. 2019 Jul 8;8:e46327. doi: 10.7554/eLife.46327.
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10970838   PMID:15257297   PMID:15830352   PMID:16717059   PMID:16946708   PMID:18335541   PMID:19075228   PMID:19720736   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mbnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82146,789,570 - 146,964,136 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2146,789,596 - 146,964,134 (+)EnsemblGRCr8
mRatBN7.22144,639,819 - 144,814,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2144,670,285 - 144,814,368 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2151,355,648 - 151,467,147 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02149,455,585 - 149,566,848 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02144,087,992 - 144,199,253 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02150,698,248 - 150,867,791 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)Ensemblrn6Rnor6.0
Rnor_5.02170,117,575 - 170,293,074 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42149,891,873 - 150,004,089 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2139,098,823 - 139,210,061 (+)NCBICelera
RGSC_v3.12149,942,293 - 149,942,359 (+)NCBI
Cytogenetic Map2q31NCBI
MBNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383152,243,632 - 152,465,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3152,243,828 - 152,465,781 (+)Ensemblhg38GRCh38
GRCh373151,961,421 - 152,183,569 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363153,468,519 - 153,666,259 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3150,403,912 - 150,601,668 (+)NCBICelera
Cytogenetic Map3q25.1-q25.2NCBI
HuRef3149,377,001 - 149,574,674 (+)NCBIHuRef
CHM1_13151,948,828 - 152,146,588 (+)NCBICHM1_1
T2T-CHM13v2.03155,011,321 - 155,233,681 (+)NCBIT2T-CHM13v2.0
Mbnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39360,380,209 - 60,537,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl360,380,251 - 60,537,171 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38360,472,559 - 60,629,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl360,472,830 - 60,629,750 (+)Ensemblmm10GRCm38
MGSCv37360,305,174 - 60,433,670 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36360,589,181 - 60,717,677 (+)NCBIMGSCv36mm8
Celera360,219,667 - 60,332,581 (+)NCBICelera
Cytogenetic Map3DNCBI
cM Map329.17NCBI
Mbnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554483,864,843 - 4,065,122 (+)Ensembl
ChiLan1.0NW_0049554483,864,862 - 4,065,122 (+)NCBIChiLan1.0ChiLan1.0
MBNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22150,158,327 - 150,358,130 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13150,164,008 - 150,362,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03149,288,323 - 149,487,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13156,858,039 - 157,057,239 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3156,888,763 - 157,054,207 (+)EnsemblpanPan2panpan1.1
MBNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12346,697,755 - 46,941,300 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2346,737,790 - 46,938,233 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2346,601,940 - 46,804,866 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02347,365,203 - 47,568,448 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2347,290,541 - 47,567,960 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12346,951,402 - 47,154,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02347,007,248 - 47,210,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02347,287,802 - 47,491,349 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mbnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560289,153,246 - 89,338,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936519419,571 - 580,730 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936519419,332 - 580,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1392,491,808 - 92,696,230 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11392,491,778 - 92,696,235 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213100,593,105 - 100,741,224 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MBNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11538,208,694 - 38,427,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1538,208,038 - 38,375,273 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604110,962,106 - 11,182,754 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mbnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473029,959,580 - 30,113,245 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473029,930,292 - 30,112,145 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mbnl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1394,489,955 - 94,633,867 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mbnl1
1096 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:101
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000036808
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)2105628029150628029Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2124103798154505346Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2120039407159440891Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2106869825151869825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2120039407151869825Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
7488933Bp368Blood pressure QTL 3680.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2104957381149957381Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2120339555165339555Rat
9685068Swd7Spike wave discharge measurement QTL 73.20.01brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge rate (CMO:0001739)2143806628149738646Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2114032149150226270Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)2114440891159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2116804572161804572Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2145807215173074435Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY148302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000036808   ⟹   ENSRNOP00000033304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,789,599 - 146,964,132 (+)Ensembl
mRatBN7.2 Ensembl2144,670,285 - 144,807,145 (+)Ensembl
Rnor_6.0 Ensembl2150,756,258 - 150,867,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088461   ⟹   ENSRNOP00000070159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,789,596 - 146,964,132 (+)Ensembl
mRatBN7.2 Ensembl2144,670,285 - 144,813,227 (+)Ensembl
Rnor_6.0 Ensembl2150,756,185 - 150,869,690 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097984   ⟹   ENSRNOP00000094816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,819,968 - 146,964,133 (+)Ensembl
mRatBN7.2 Ensembl2144,670,334 - 144,814,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102621   ⟹   ENSRNOP00000095306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,789,599 - 146,964,133 (+)Ensembl
mRatBN7.2 Ensembl2144,670,285 - 144,813,227 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106022   ⟹   ENSRNOP00000081828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,819,990 - 146,964,134 (+)Ensembl
mRatBN7.2 Ensembl2144,670,334 - 144,814,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111474   ⟹   ENSRNOP00000076663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,820,011 - 146,964,133 (+)Ensembl
mRatBN7.2 Ensembl2144,670,285 - 144,814,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130882   ⟹   ENSRNOP00000100802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,789,599 - 146,964,129 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137274   ⟹   ENSRNOP00000108227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,846,110 - 146,964,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168888   ⟹   ENSRNOP00000106207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2146,846,110 - 146,964,133 (+)Ensembl
RefSeq Acc Id: NM_001191566   ⟹   NP_001178495
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,034 - 146,964,136 (+)NCBI
mRatBN7.22144,670,283 - 144,814,395 (+)NCBI
Rnor_6.02150,756,258 - 150,867,775 (+)NCBI
Rnor_5.02170,117,575 - 170,293,074 (+)NCBI
Celera2139,098,823 - 139,210,061 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001412543   ⟹   NP_001399472
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,034 - 146,964,136 (+)NCBI
mRatBN7.22144,670,283 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_008761039   ⟹   XP_008759261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,951,738 (+)NCBI
mRatBN7.22144,670,305 - 144,802,410 (+)NCBI
Rnor_6.02150,728,779 - 150,859,225 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101825   ⟹   XP_038957753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101827   ⟹   XP_038957755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
mRatBN7.22144,639,825 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101828   ⟹   XP_038957756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,840,902 - 146,964,134 (+)NCBI
mRatBN7.22144,695,633 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101831   ⟹   XP_038957759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101832   ⟹   XP_038957760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101834   ⟹   XP_038957762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101835   ⟹   XP_038957763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101838   ⟹   XP_038957766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101839   ⟹   XP_038957767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101841   ⟹   XP_038957769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101843   ⟹   XP_038957771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101844   ⟹   XP_038957772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101845   ⟹   XP_038957773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101846   ⟹   XP_038957774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101848   ⟹   XP_038957776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101849   ⟹   XP_038957777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101852   ⟹   XP_038957780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
mRatBN7.22144,639,825 - 144,814,395 (+)NCBI
RefSeq Acc Id: XM_039101857   ⟹   XP_038957785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_039101859   ⟹   XP_038957787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
mRatBN7.22144,670,305 - 144,814,393 (+)NCBI
RefSeq Acc Id: XM_063281379   ⟹   XP_063137449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281380   ⟹   XP_063137450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,840,907 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281381   ⟹   XP_063137451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281382   ⟹   XP_063137452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281383   ⟹   XP_063137453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,840,928 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281384   ⟹   XP_063137454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281385   ⟹   XP_063137455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281386   ⟹   XP_063137456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281387   ⟹   XP_063137457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,098 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281388   ⟹   XP_063137458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,104 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281389   ⟹   XP_063137459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281390   ⟹   XP_063137460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281391   ⟹   XP_063137461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,134 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281392   ⟹   XP_063137462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281393   ⟹   XP_063137463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,139 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281394   ⟹   XP_063137464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,840,929 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281395   ⟹   XP_063137465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,102 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281397   ⟹   XP_063137467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281398   ⟹   XP_063137468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281399   ⟹   XP_063137469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,789,570 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281400   ⟹   XP_063137470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,741 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281401   ⟹   XP_063137471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,841,141 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281402   ⟹   XP_063137472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,820,051 - 146,951,738 (+)NCBI
RefSeq Acc Id: XM_063281403   ⟹   XP_063137473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281405   ⟹   XP_063137475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281406   ⟹   XP_063137476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281407   ⟹   XP_063137477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
RefSeq Acc Id: XM_063281408   ⟹   XP_063137478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82146,819,747 - 146,964,134 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178495 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399472 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957753 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957755 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957759 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957760 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957771 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957785 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957787 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137450 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137452 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137454 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137455 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137456 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137457 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137458 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137460 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137461 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137462 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137463 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137464 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137465 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137467 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137468 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137470 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137471 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137477 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137478 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A8I6B1J2 (Get FASTA)   NCBI Sequence Viewer  
  AAN72327 (Get FASTA)   NCBI Sequence Viewer  
  EDM14832 (Get FASTA)   NCBI Sequence Viewer  
  EDM14833 (Get FASTA)   NCBI Sequence Viewer  
  EDM14834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033304
  ENSRNOP00000070159
  ENSRNOP00000076663
  ENSRNOP00000081828
  ENSRNOP00000094816
  ENSRNOP00000094816.1
  ENSRNOP00000095306
  ENSRNOP00000100802
  ENSRNOP00000106207
  ENSRNOP00000108227
RefSeq Acc Id: NP_001178495   ⟸   NM_001191566
- Peptide Label: isoform 1
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL),   A0A8I6B1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759261   ⟸   XM_008761039
- Peptide Label: isoform X12
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033304   ⟸   ENSRNOT00000036808
Ensembl Acc Id: ENSRNOP00000070159   ⟸   ENSRNOT00000088461
RefSeq Acc Id: XP_038957755   ⟸   XM_039101827
- Peptide Label: isoform X1
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957780   ⟸   XM_039101852
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038957753   ⟸   XM_039101825
- Peptide Label: isoform X1
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957763   ⟸   XM_039101835
- Peptide Label: isoform X6
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957766   ⟸   XM_039101838
- Peptide Label: isoform X8
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957759   ⟸   XM_039101831
- Peptide Label: isoform X3
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957769   ⟸   XM_039101841
- Peptide Label: isoform X11
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957760   ⟸   XM_039101832
- Peptide Label: isoform X4
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957773   ⟸   XM_039101845
- Peptide Label: isoform X15
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957767   ⟸   XM_039101839
- Peptide Label: isoform X9
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957771   ⟸   XM_039101843
- Peptide Label: isoform X13
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957785   ⟸   XM_039101857
- Peptide Label: isoform X21
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957762   ⟸   XM_039101834
- Peptide Label: isoform X5
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957774   ⟸   XM_039101846
- Peptide Label: isoform X16
- UniProtKB: A6JVL8 (UniProtKB/TrEMBL),   A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957776   ⟸   XM_039101848
- Peptide Label: isoform X17
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957772   ⟸   XM_039101844
- Peptide Label: isoform X14
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957787   ⟸   XM_039101859
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AQ03 (UniProtKB/TrEMBL),   A6JVM0 (UniProtKB/TrEMBL),   A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957777   ⟸   XM_039101849
- Peptide Label: isoform X18
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957756   ⟸   XM_039101828
- Peptide Label: isoform X1
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081828   ⟸   ENSRNOT00000106022
Ensembl Acc Id: ENSRNOP00000095306   ⟸   ENSRNOT00000102621
Ensembl Acc Id: ENSRNOP00000094816   ⟸   ENSRNOT00000097984
Ensembl Acc Id: ENSRNOP00000076663   ⟸   ENSRNOT00000111474
RefSeq Acc Id: NP_001399472   ⟸   NM_001412543
- Peptide Label: isoform 2
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL),   A0A8I5Y4V0 (UniProtKB/TrEMBL),   A6JVL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137452   ⟸   XM_063281382
- Peptide Label: isoform X3
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137456   ⟸   XM_063281386
- Peptide Label: isoform X5
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137460   ⟸   XM_063281390
- Peptide Label: isoform X10
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL),   A0A8I5Y4V0 (UniProtKB/TrEMBL),   A6JVL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137462   ⟸   XM_063281392
- Peptide Label: isoform X14
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137469   ⟸   XM_063281399
- Peptide Label: isoform X20
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137449   ⟸   XM_063281379
- Peptide Label: isoform X1
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137451   ⟸   XM_063281381
- Peptide Label: isoform X3
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137454   ⟸   XM_063281384
- Peptide Label: isoform X4
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137455   ⟸   XM_063281385
- Peptide Label: isoform X5
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137459   ⟸   XM_063281389
- Peptide Label: isoform X10
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL),   A0A8I5Y4V0 (UniProtKB/TrEMBL),   A6JVL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137470   ⟸   XM_063281400
- Peptide Label: isoform X22
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL),   A0A8I6AQ03 (UniProtKB/TrEMBL),   A6JVM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137467   ⟸   XM_063281397
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063137473   ⟸   XM_063281403
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063137475   ⟸   XM_063281405
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063137476   ⟸   XM_063281406
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063137477   ⟸   XM_063281407
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063137478   ⟸   XM_063281408
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063137468   ⟸   XM_063281398
- Peptide Label: isoform X20
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137472   ⟸   XM_063281402
- Peptide Label: isoform X23
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137450   ⟸   XM_063281380
- Peptide Label: isoform X2
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137453   ⟸   XM_063281383
- Peptide Label: isoform X3
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137464   ⟸   XM_063281394
- Peptide Label: isoform X15
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137457   ⟸   XM_063281387
- Peptide Label: isoform X5
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137465   ⟸   XM_063281395
- Peptide Label: isoform X17
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137458   ⟸   XM_063281388
- Peptide Label: isoform X7
- UniProtKB: A0A8I6B1J2 (UniProtKB/Swiss-Prot),   F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137461   ⟸   XM_063281391
- Peptide Label: isoform X10
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL),   A0A8I5Y4V0 (UniProtKB/TrEMBL),   A6JVL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137463   ⟸   XM_063281393
- Peptide Label: isoform X14
- UniProtKB: F1M9N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137471   ⟸   XM_063281401
- Peptide Label: isoform X22
- UniProtKB: A6JVM1 (UniProtKB/TrEMBL),   A0A8I6AQ03 (UniProtKB/TrEMBL),   A6JVM0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108227   ⟸   ENSRNOT00000137274
Ensembl Acc Id: ENSRNOP00000100802   ⟸   ENSRNOT00000130882
Ensembl Acc Id: ENSRNOP00000106207   ⟸   ENSRNOT00000168888
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JX72-F1-model_v2 AlphaFold A0A0G2JX72 1-436 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691352
Promoter ID:EPDNEW_R1877
Type:single initiation site
Name:Mbnl1_1
Description:muscleblind-like splicing regulator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02150,756,202 - 150,756,262EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628668 AgrOrtholog
BioCyc Gene G2FUF-52960 BioCyc
Ensembl Genes ENSRNOG00000014076 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036808 ENTREZGENE
  ENSRNOT00000088461 ENTREZGENE
  ENSRNOT00000097984 ENTREZGENE
  ENSRNOT00000097984.1 UniProtKB/Swiss-Prot
  ENSRNOT00000102621 ENTREZGENE
  ENSRNOT00000106022 ENTREZGENE
  ENSRNOT00000111474 ENTREZGENE
  ENSRNOT00000130882 ENTREZGENE
  ENSRNOT00000137274 ENTREZGENE
  ENSRNOT00000168888 ENTREZGENE
Gene3D-CATH 3.30.1370.210 UniProtKB/Swiss-Prot
InterPro Znf-CCCH_Muscleblind-like UniProtKB/Swiss-Prot
  Znf_CCCH UniProtKB/Swiss-Prot
KEGG Report rno:282635 UniProtKB/Swiss-Prot
NCBI Gene 282635 ENTREZGENE
PANTHER MUSCLEBLIND-LIKE PROTEIN UniProtKB/Swiss-Prot
  MUSCLEBLIND-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam zf-CCCH UniProtKB/Swiss-Prot
  zf-CCCH_10 UniProtKB/Swiss-Prot
  zf-CCCH_2 UniProtKB/Swiss-Prot
PhenoGen Mbnl1 PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014076 RatGTEx
SMART ZnF_C3H1 UniProtKB/Swiss-Prot
UniProt A0A0G2JX72_RAT UniProtKB/TrEMBL
  A0A8I5Y4V0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVU8_RAT UniProtKB/TrEMBL
  A0A8I6AQ03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1J2 ENTREZGENE
  A0ABK0LH12_RAT UniProtKB/TrEMBL
  A0ABK0LR71_RAT UniProtKB/TrEMBL
  A0ABK0LVD9_RAT UniProtKB/TrEMBL
  A6JVL7 ENTREZGENE, UniProtKB/TrEMBL
  A6JVL8 ENTREZGENE, UniProtKB/TrEMBL
  A6JVL9_RAT UniProtKB/TrEMBL
  A6JVM0 ENTREZGENE, UniProtKB/TrEMBL
  A6JVM1 ENTREZGENE, UniProtKB/TrEMBL
  F1M9N4 ENTREZGENE, UniProtKB/TrEMBL
  MBNL1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-25 Mbnl1  muscleblind-like splicing regulator 1  Mbnl1  muscleblind-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Mbnl1  muscleblind-like 1 (Drosophila)  Mbnl  muscleblind-like (Drosophila)  Symbol and Name updated 1299863 APPROVED
2003-02-27 Mbnl  muscleblind-like (Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL