Slc16a2 (solute carrier family 16 member 2) - Rat Genome Database

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Gene: Slc16a2 (solute carrier family 16 member 2) Rattus norvegicus
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Symbol: Slc16a2
Name: solute carrier family 16 member 2
RGD ID: 628608
Description: Enables thyroid hormone transmembrane transporter activity. Involved in hormone transport. Located in apical plasma membrane. Human ortholog(s) of this gene implicated in Allan-Herndon-Dudley syndrome and intellectual disability. Orthologous to human SLC16A2 (solute carrier family 16 member 2); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MCT 8; monocarboxylate transporter 8; solute carrier family 16 (monocarboxylic acid transporters), member 2; solute carrier family 16, member 2 (monocarboxylic acid transporter 8); solute carrier family 16, member 2 (thyroid hormone transporter)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,791,096 - 72,914,299 (-)NCBIGRCr8
mRatBN7.2X68,725,365 - 68,848,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX68,723,261 - 68,848,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX70,234,514 - 70,357,718 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X73,734,753 - 73,857,979 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,295,965 - 71,419,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X74,578,600 - 74,706,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,577,131 - 74,706,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,380,008 - 75,507,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,700,554 - 91,825,108 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X91,773,988 - 91,898,541 (-)NCBI
CeleraX70,090,308 - 70,212,743 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Slc16a2Ratintellectual disability  ISOSLC16A2 (Homo sapiens)1599329Allan-Herndon-Dudley syndrome (AHDS), OMIM:300095RGD 
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Original Reference(s)
Slc16a2RatAllan-Herndon-Dudley syndrome  ISOSLC16A2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12871948 more ...
Slc16a2Ratautistic disorder  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Slc16a2Ratautosomal hemophilia A  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Slc16a2Ratfactor VIII deficiency  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Slc16a2Ratgenetic disease  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:15980113 more ...
Slc16a2Rathereditary spastic paraplegia  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegiaClinVarPMID:18414213 more ...
Slc16a2Ratintellectual disability  ISOSLC16A2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25167861 more ...
Slc16a2Ratparaplegia  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVarPMID:15488219 more ...
Slc16a2Ratprostate cancer  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
Slc16a2Ratsyndromic X-linked intellectual disability Lubs type  ISOSLC16A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
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Original Reference(s)
Slc16a2RatAllan-Herndon-Dudley syndrome  ISOSLC16A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Slc16a2Ratautism spectrum disorder  ISOSLC16A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24781735
Slc16a2Ratcholestasis  ISOSLC16A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27989131
Slc16a2Rathypothyroidism  ISOSLC16A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:31121238
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Original Reference(s)
Slc16a2RatAllan-Herndon-Dudley syndrome  ISSSlc16a2 (Mus musculus)13592920OMIM:300523MouseDO 
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Original Reference(s)
Slc16a2RatAllan-Herndon-Dudley syndrome  ISOSLC16A2 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Slc16a2Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of SLC16A2 mRNA]CTDPMID:31150632
Slc16a2Rat(1->4)-beta-D-glucan multiple interactionsISOSlc16a2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SLC16A2 mRNACTDPMID:36331819
Slc16a2Rat1,1-dichloroethene decreases expressionISOSlc16a2 (Mus musculus)6480464vinylidene chloride results in decreased expression of SLC16A2 mRNACTDPMID:26682919
Slc16a2Rat1,2-dichloroethane decreases expressionISOSlc16a2 (Mus musculus)6480464ethylene dichloride results in decreased expression of SLC16A2 mRNACTDPMID:28960355
Slc16a2Rat17beta-estradiol decreases expressionISOSlc16a2 (Mus musculus)6480464Estradiol results in decreased expression of SLC16A2 mRNACTDPMID:39298647
Slc16a2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of SLC16A2 mRNACTDPMID:32145629 and PMID:35192832
Slc16a2Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOSlc16a2 (Mus musculus)64804642 more ...CTDPMID:17964624
Slc16a2Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOSLC16A2 (Homo sapiens)64804642 more ...CTDPMID:37116683
Slc16a2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc16a2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC16A2 mRNACTDPMID:19770486
Slc16a2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SLC16A2 mRNACTDPMID:33387578
Slc16a2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOSlc16a2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of SLC16A2 mRNACTDPMID:24713691 and PMID:33956508
Slc16a2Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:23196670
Slc16a2Rat3,3',5-triiodo-L-thyronine multiple interactionsISOSLC16A2 (Homo sapiens)6480464bisphenol A inhibits the reaction [SLC16A2 protein results in increased uptake of Triiodothyronine] more ...CTDPMID:28119167
Slc16a2Rat3,3',5-triiodo-L-thyronine increases uptakeISOSLC16A2 (Homo sapiens)6480464SLC16A2 protein results in increased uptake of TriiodothyronineCTDPMID:28119167
Slc16a2Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of SLC16A2 mRNACTDPMID:28522335
Slc16a2Rat4,4'-sulfonyldiphenol decreases expressionISOSlc16a2 (Mus musculus)6480464bisphenol S results in decreased expression of SLC16A2 mRNACTDPMID:39298647
Slc16a2Rat4-hydroxyphenyl retinamide increases expressionISOSlc16a2 (Mus musculus)6480464Fenretinide results in increased expression of SLC16A2 mRNACTDPMID:28973697
Slc16a2Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of SLC16A2 mRNACTDPMID:24780913
Slc16a2Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of SLC16A2 mRNACTDPMID:36843608
Slc16a2Rat7,12-dimethyltetraphene decreases expressionISOSlc16a2 (Mus musculus)64804649 more ...CTDPMID:32553695

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Biological Process
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Original Reference(s)
Slc16a2Ratamino acid import across plasma membrane involved_inISOSLC16A2 (Homo sapiens)1624291 PMID:26305885RGDPMID:26305885
Slc16a2Ratamino acid metabolic process acts_upstream_ofISOSLC16A2 (Homo sapiens)1624291UniProtKB:P49895 and PMID:26305885RGDPMID:26305885
Slc16a2Rathormone transport  IMP 1304408 RGD 
Slc16a2Ratnegative regulation of neural precursor cell proliferation acts_upstream_ofISOSLC16A2 (Homo sapiens)1624291 PMID:19022891RGDPMID:19022891
Slc16a2Ratthyroid hormone generation acts_upstream_of_or_within_negative_effectISOSlc16a2 (Mus musculus)1624291MGI:1919722 more ...RGDPMID:24248460
Slc16a2Ratthyroid hormone metabolic process acts_upstream_ofISOSLC16A2 (Homo sapiens)1624291UniProtKB:P55073 and PMID:26305885RGDPMID:26305885
Slc16a2Ratthyroid hormone transport involved_inISSUniProtKB:P360211600115GO_REF:0000024UniProtGO_REF:0000024
Slc16a2Ratthyroid hormone transport acts_upstream_of_or_withinISOSlc16a2 (Mus musculus)1624291MGI:1919722 more ...RGDPMID:24248460
Slc16a2Ratthyroid hormone transport involved_inIBAMGI:1203732 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc16a2Ratthyroid hormone transport involved_inISOSlc16a2 (Mus musculus)1624291 PMID:31436139RGDPMID:31436139
Slc16a2Ratthyroid hormone transport involved_inISOSLC16A2 (Homo sapiens)1624291 PMID:19022891 more ...RGDPMID:19022891 more ...
Slc16a2Ratthyroid-stimulating hormone secretion acts_upstream_of_or_within_negative_effectISOSlc16a2 (Mus musculus)1624291MGI:1919722 more ...RGDPMID:24248460
Slc16a2Rattransmembrane transport involved_inIEAInterPro:IPR0117011600115GO_REF:0000002InterProGO_REF:0000002
Slc16a2Rattransport across blood-brain barrier involved_inISOSLC16A2 (Homo sapiens)1624291 PMID:28526555RGDPMID:28526555
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Cellular Component
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Original Reference(s)
Slc16a2Ratapical plasma membrane located_inISOSlc16a2 (Mus musculus)1624291 PMID:18687783RGDPMID:18687783
Slc16a2Ratapical plasma membrane located_inIEAUniProtKB-SubCell:SL-00151600115GO_REF:0000044UniProtGO_REF:0000044
Slc16a2Ratapical plasma membrane located_inISOSLC16A2 (Homo sapiens)1624291 PMID:18687783RGDPMID:18687783
Slc16a2Ratapical plasma membrane located_inIDA 15090845PMID:18687783UniProt 
Slc16a2Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc16a2Ratplasma membrane located_inISOSLC16A2 (Homo sapiens)1624291 PMID:19022891 more ...RGDGO_REF:0000052 more ...
Slc16a2Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Slc16a2Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Slc16a2Ratplasma membrane is_active_inIBAFB:FBgn0033028 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc16a2Ratplasma membrane located_inIDA 15090845PMID:18687783ARUK-UCL 
Slc16a2Ratplasma membrane located_inISSUniProtKB:P360211600115GO_REF:0000024UniProtGO_REF:0000024
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#
Reference Title
Reference Citation
1. Identification of monocarboxylate transporter 8 as a specific thyroid hormone transporter. Friesema EC, etal., J Biol Chem 2003 Oct 10;278(41):40128-35. Epub 2003 Jul 18.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Decreased cellular uptake and metabolism in Allan-Herndon-Dudley syndrome (AHDS) due to a novel mutation in the MCT8 thyroid hormone transporter. Maranduba CM, etal., J Med Genet. 2006 May;43(5):457-60. Epub 2005 Jun 24.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Cloning and sequencing of four new mammalian monocarboxylate transporter (MCT) homologues confirms the existence of a transporter family with an ancient past. Price NT, etal., Biochem J 1998 Jan 15;329 ( Pt 2):321-8.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Expression of the thyroid hormone transporters monocarboxylate transporter-8 (SLC16A2) and organic ion transporter-14 (SLCO1C1) at the blood-brain barrier. Roberts LM, etal., Endocrinology. 2008 Dec;149(12):6251-61. doi: 10.1210/en.2008-0378. Epub 2008 Aug 7.
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PMID:22699085   PMID:24248460   PMID:24763672   PMID:25594699   PMID:26426690   PMID:26626087   PMID:31561916  



Slc16a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,791,096 - 72,914,299 (-)NCBIGRCr8
mRatBN7.2X68,725,365 - 68,848,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX68,723,261 - 68,848,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX70,234,514 - 70,357,718 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X73,734,753 - 73,857,979 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,295,965 - 71,419,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X74,578,600 - 74,706,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,577,131 - 74,706,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,380,008 - 75,507,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,700,554 - 91,825,108 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X91,773,988 - 91,898,541 (-)NCBI
CeleraX70,090,308 - 70,212,743 (-)NCBICelera
Cytogenetic MapXq22NCBI
SLC16A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,421,493 - 74,533,916 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX74,421,493 - 74,533,917 (+)EnsemblGRCh38hg38GRCh38
GRCh37X73,641,328 - 73,753,751 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,557,810 - 73,670,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X73,424,105 - 73,536,772NCBI
CeleraX73,924,511 - 74,037,335 (+)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX67,276,476 - 67,388,860 (+)NCBIHuRef
CHM1_1X73,534,235 - 73,646,665 (+)NCBICHM1_1
T2T-CHM13v2.0X72,854,953 - 72,967,553 (+)NCBIT2T-CHM13v2.0
Slc16a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,741,020 - 102,865,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX102,741,020 - 102,865,589 (-)EnsemblGRCm39 Ensembl
GRCm38X103,697,414 - 103,821,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,697,414 - 103,821,983 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X100,892,753 - 101,017,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X99,900,137 - 100,024,678 (-)NCBIMGSCv36mm8
CeleraX90,599,693 - 90,720,985 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.29NCBI
Slc16a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955562306,051 - 458,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955562305,850 - 455,764 (+)NCBIChiLan1.0ChiLan1.0
SLC16A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X74,103,822 - 74,217,430 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X74,108,379 - 74,221,040 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X63,673,992 - 63,787,011 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X73,791,225 - 73,903,727 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX73,791,200 - 73,903,727 (+)Ensemblpanpan1.1panPan2
SLC16A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X57,845,865 - 57,859,827 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX57,845,488 - 57,857,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX48,923,040 - 49,038,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X58,957,339 - 59,073,281 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX58,956,340 - 59,073,279 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X56,702,227 - 56,818,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X58,281,114 - 58,397,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X57,888,714 - 58,004,625 (+)NCBIUU_Cfam_GSD_1.0
Slc16a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X44,037,633 - 44,144,591 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936683803,134 - 910,284 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936683803,186 - 910,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX59,748,745 - 59,861,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X59,748,685 - 59,861,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X67,805,324 - 67,819,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,023,846 - 64,123,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX64,023,327 - 64,125,422 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606717,596,931 - 17,696,288 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248366,455,190 - 6,668,643 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248366,454,988 - 6,670,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc16a2
326 total Variants

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:74
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000040637
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000040637   ⟹   ENSRNOP00000042040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX68,723,261 - 68,848,771 (-)Ensembl
Rnor_6.0 EnsemblX74,577,131 - 74,706,214 (-)Ensembl
RefSeq Acc Id: NM_147216   ⟹   NP_671749
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X72,791,096 - 72,914,299 (-)NCBI
mRatBN7.2X68,725,365 - 68,848,572 (-)NCBI
Rnor_6.0X74,578,600 - 74,706,068 (-)NCBI
Rnor_5.0X75,380,008 - 75,507,522 (-)NCBI
RGSC_v3.4X91,700,554 - 91,825,108 (-)RGD
CeleraX70,090,308 - 70,212,743 (-)NCBI
Sequence:
Protein RefSeqs NP_671749 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD43059 (Get FASTA)   NCBI Sequence Viewer  
  EDM07171 (Get FASTA)   NCBI Sequence Viewer  
  EDM07172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042040.2
  ENSRNOP00000098884
GenBank Protein Q8K1P8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_671749   ⟸   NM_147216
- UniProtKB: Q8K1P8 (UniProtKB/Swiss-Prot),   G3V9C2 (UniProtKB/TrEMBL),   A6IV07 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042040   ⟸   ENSRNOT00000040637
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K1P8-F1-model_v2 AlphaFold Q8K1P8 1-545 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701893
Promoter ID:EPDNEW_R12417
Type:initiation region
Name:Slc16a2_1
Description:solute carrier family 16 member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X74,706,173 - 74,706,233EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-2003 BioCyc
Ensembl Genes ENSRNOG00000002832 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000040637.4 UniProtKB/Swiss-Prot
  ENSRNOT00000151894 ENTREZGENE
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
InterPro MFS UniProtKB/Swiss-Prot
  MFS_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  Proton-linked_MCT UniProtKB/Swiss-Prot
KEGG Report rno:259248 UniProtKB/Swiss-Prot
NCBI Gene 259248 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/Swiss-Prot
  PTHR11360:SF123 UniProtKB/Swiss-Prot
Pfam MFS_1 UniProtKB/Swiss-Prot
PhenoGen Slc16a2 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002832 RatGTEx
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt A6IV07 ENTREZGENE, UniProtKB/TrEMBL
  G3V9C2 ENTREZGENE
  MOT8_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary G3V9C2 UniProtKB/Swiss-Prot
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc16a2  solute carrier family 16 member 2  Slc16a2  solute carrier family 16, member 2 (thyroid hormone transporter)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc16a2  solute carrier family 16, member 2 (thyroid hormone transporter)  Slc16a2  solute carrier family 16, member 2 (monocarboxylic acid transporter 8)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc16a2  solute carrier family 16, member 2 (monocarboxylic acid transporter 8)  Slc16a2  solute carrier family 16 (monocarboxylic acid transporters), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc16a2  solute carrier family 16 (monocarboxylic acid transporters), member 2    monocarboxylate transporter 8  Name updated 1299863 APPROVED
2003-02-27 Slc16a2  monocarboxylate transporter 8      Symbol and Name status set to provisional 70820 PROVISIONAL