Slc16a2 (solute carrier family 16 member 2) - Rat Genome Database

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Gene: Slc16a2 (solute carrier family 16 member 2) Ictidomys tridecemlineatus
Analyze
Symbol: Slc16a2
Name: solute carrier family 16 member 2
RGD ID: 12728870
Description: ENCODES a protein that exhibits thyroid hormone transmembrane transporter activity (ortholog); INVOLVED IN amino acid metabolic process (ortholog); hormone transport (ortholog); negative regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH Allan-Herndon-Dudley syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN apical plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X44,037,633 - 44,144,591 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936683803,134 - 910,284 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936683803,186 - 910,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc16a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X44,037,633 - 44,144,591 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936683803,134 - 910,284 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936683803,186 - 910,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,421,493 - 74,533,916 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX74,421,493 - 74,533,917 (+)EnsemblGRCh38hg38GRCh38
GRCh37X73,641,328 - 73,753,751 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,557,810 - 73,670,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X73,424,105 - 73,536,772NCBI
CeleraX73,924,511 - 74,037,335 (+)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX67,276,476 - 67,388,860 (+)NCBIHuRef
CHM1_1X73,534,235 - 73,646,665 (+)NCBICHM1_1
T2T-CHM13v2.0X72,854,953 - 72,967,553 (+)NCBIT2T-CHM13v2.0
Slc16a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,741,020 - 102,865,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX102,741,020 - 102,865,589 (-)EnsemblGRCm39 Ensembl
GRCm38X103,697,414 - 103,821,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,697,414 - 103,821,983 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X100,892,753 - 101,017,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X99,900,137 - 100,024,678 (-)NCBIMGSCv36mm8
CeleraX90,599,693 - 90,720,985 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.29NCBI
Slc16a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,791,096 - 72,914,299 (-)NCBIGRCr8
mRatBN7.2X68,725,365 - 68,848,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX68,723,261 - 68,848,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX70,234,514 - 70,357,718 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X73,734,753 - 73,857,979 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,295,965 - 71,419,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X74,578,600 - 74,706,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,577,131 - 74,706,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,380,008 - 75,507,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,700,554 - 91,825,108 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X91,773,988 - 91,898,541 (-)NCBI
CeleraX70,090,308 - 70,212,743 (-)NCBICelera
Cytogenetic MapXq22NCBI
Slc16a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955562306,051 - 458,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955562305,850 - 455,764 (+)NCBIChiLan1.0ChiLan1.0
SLC16A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X74,103,822 - 74,217,430 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X74,108,379 - 74,221,040 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X63,673,992 - 63,787,011 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X73,791,225 - 73,903,727 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX73,791,200 - 73,903,727 (+)Ensemblpanpan1.1panPan2
SLC16A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X57,845,865 - 57,859,827 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX57,845,488 - 57,857,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX48,923,040 - 49,038,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X58,957,339 - 59,073,281 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX58,956,340 - 59,073,279 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X56,702,227 - 56,818,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X58,281,114 - 58,397,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X57,888,714 - 58,004,625 (+)NCBIUU_Cfam_GSD_1.0
SLC16A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX59,748,745 - 59,861,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X59,748,685 - 59,861,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X67,805,324 - 67,819,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,023,846 - 64,123,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX64,023,327 - 64,125,422 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606717,596,931 - 17,696,288 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248366,455,190 - 6,668,643 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248366,454,988 - 6,670,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000021497   ⟹   ENSSTOP00000016992
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936683803,134 - 910,284 (+)Ensembl
RefSeq Acc Id: XM_005337481   ⟹   XP_005337538
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X44,037,633 - 44,144,591 (-)NCBI
SpeTri2.0NW_004936683803,186 - 910,143 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337538 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016992.2
GenBank Protein KAG3272278 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005337538   ⟸   XM_005337481
- UniProtKB: I3MXZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000016992   ⟸   ENSSTOT00000021497
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026933 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021497.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc16a2 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF123 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3MXZ7 ENTREZGENE, UniProtKB/TrEMBL