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Gene: Strn3 (striatin 3) Rattus norvegicus

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Symbol:

Strn3

Name:

striatin 3

RGD ID:

621827

Description:

Predicted to enable armadillo repeat domain binding activity; enzyme binding activity; and protein-macromolecule adaptor activity. Involved in negative regulation of DNA-templated transcription; negative regulation of intracellular estrogen receptor signaling pathway; and response to estradiol. Located in dendrite and neuronal cell body. Part of protein-containing complex. Orthologous to human STRN3 (striatin 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cell cycle autoantigen SG2NA; cell-cycle autoantigen SG2NA; Gs2na; nuclear autoantigen; s/G2 antigen; Sg2na; striatin, calmodulin binding protein 3; striatin-3; striatin-3-gamma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STRN3 (striatin 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Strn3 (striatin, calmodulin binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Strn3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STRN3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STRN3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Strn3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STRN3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STRN3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Strn3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Strn3 (striatin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Strn3 (striatin, calmodulin binding protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STRN3 (striatin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	strn3 (striatin, calmodulin binding protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	FAR8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Cka	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cka	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cash-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cash-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	strn3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	strn3	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	74,783,156 - 74,869,473 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl				GRCr8
mRatBN7.2	6	69,047,776 - 69,134,102 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	69,469,929 - 69,554,311 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	69,776,579 - 69,860,949 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	69,216,069 - 69,300,471 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	72,376,360 - 72,462,676 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	72,376,330 - 72,462,658 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	71,708,959 - 71,795,287 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	67,923,577 - 68,009,729 (-)	NCBI		Celera
RGSC_v3.1	6	71,733,236 - 71,798,385 (-)	NCBI
Cytogenetic Map	6	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (EXP)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibenzo[a,l]pyrene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

dimethylarsinous acid (ISO)

Enterolactone (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

isoflurane (ISO)

ivermectin (ISO)

leflunomide (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

succimer (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IMP,ISO)

negative regulation of hippo signaling (IEA,ISO,ISS)

negative regulation of intracellular estrogen receptor signaling pathway (IBA,IMP)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

response to estradiol (IDA)

Cellular Component

cytoplasm (IEA,ISO)

dendrite (IBA,IDA)

FAR/SIN/STRIPAK complex (IBA,IEA,ISO,ISS)

Golgi apparatus (IEA,ISO)

membrane (IEA)

neuronal cell body (IBA,IDA)

nucleoplasm (IEA,ISO)

nucleus (ISO)

plasma membrane (IEA,ISO)

postsynapse (IBA,IEA,ISO)

protein-containing complex (IDA)

Molecular Function

armadillo repeat domain binding (IEA,ISO)

calmodulin binding (IEA)

protein binding (IPI,ISO)

protein kinase binding (IEA,ISO)

protein phosphatase 2A binding (IEA,ISO)

protein-containing complex binding (IDA,IEA,IPI,ISO)

protein-macromolecule adaptor activity (IBA,IEA,ISO,ISS)

small GTPase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning and characterization of phocein, a protein found from the Golgi complex to dendritic spines.	Baillat G, etal., Mol Biol Cell 2001 Mar;12(3):663-73.
2.	Expression and distribution of phocein and members of the striatin family in neurones of rat peripheral ganglia.	Blondeau C, etal., Histochem Cell Biol. 2003 Feb;119(2):131-8. Epub 2003 Feb 7.
3.	Zinedin, SG2NA, and striatin are calmodulin-binding, WD repeat proteins principally expressed in the brain.	Castets F, etal., J Biol Chem. 2000 Jun 30;275(26):19970-7.
4.	Targeting of proteins of the striatin family to dendritic spines: role of the coiled-coil domain.	Gaillard S, etal., Traffic. 2006 Jan;7(1):74-84.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Striatin-3 gamma inhibits estrogen receptor activity by recruiting a protein phosphatase.	Tan B, etal., J Mol Endocrinol. 2008 May;40(5):199-210.
10.	Transcription activating property of autoantigen SG2NA and modulating effect of WD-40 repeats.	Zhu W, etal., Exp Cell Res 2001 Oct 1;269(2):312-21.

Additional References at PubMed

PMID:11707266	PMID:18502210	PMID:18782753	PMID:25743393	PMID:37165139

Genomics

Comparative Map Data

Strn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	74,783,156 - 74,869,473 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl				GRCr8
mRatBN7.2	6	69,047,776 - 69,134,102 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	69,469,929 - 69,554,311 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	69,776,579 - 69,860,949 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	69,216,069 - 69,300,471 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	72,376,360 - 72,462,676 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	72,376,330 - 72,462,658 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	71,708,959 - 71,795,287 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	67,923,577 - 68,009,729 (-)	NCBI		Celera
RGSC_v3.1	6	71,733,236 - 71,798,385 (-)	NCBI
Cytogenetic Map	6	q23	NCBI

STRN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	30,893,804 - 31,026,379 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	30,893,799 - 31,026,418 (-)	Ensembl			hg38	GRCh38
GRCh37	14	31,363,010 - 31,495,585 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	30,432,756 - 30,565,358 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	30,432,760 - 30,565,340	NCBI
Celera	14	11,228,456 - 11,361,095 (-)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	11,480,100 - 11,613,295 (-)	NCBI		HuRef
CHM1_1	14	31,362,176 - 31,494,809 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	25,091,284 - 25,224,212 (-)	NCBI		T2T-CHM13v2.0

Strn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	51,655,324 - 51,743,942 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	51,656,415 - 51,738,680 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	51,608,541 - 51,692,351 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	51,609,632 - 51,691,897 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	52,709,528 - 52,792,901 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	52,531,252 - 52,613,506 (-)	NCBI		MGSCv36	mm8
Celera	12	52,911,780 - 52,995,322 (-)	NCBI		Celera
Cytogenetic Map	12	B3	NCBI
cM Map	12	22.11	NCBI

Strn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	29,529,507 - 29,636,674 (+)	Ensembl
ChiLan1.0	NW_004955409	29,529,507 - 29,636,674 (+)	NCBI	ChiLan1.0	ChiLan1.0

STRN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	32,220,964 - 32,351,315 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	31,437,466 - 31,567,771 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	11,668,426 - 11,798,776 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	29,867,827 - 29,997,439 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	29,869,414 - 29,997,838 (-)	Ensembl			panPan2	panpan1.1

STRN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	10,232,436 - 10,344,238 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	10,233,819 - 10,344,033 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	10,158,821 - 10,270,764 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	10,333,369 - 10,445,481 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	10,333,467 - 10,445,613 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	10,017,584 - 10,129,196 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	10,093,760 - 10,205,585 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	10,369,298 - 10,489,929 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Strn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	42,129,196 - 42,216,166 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936494	5,634,191 - 5,722,462 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936494	5,635,870 - 5,722,123 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STRN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	68,470,877 - 68,577,273 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	68,470,761 - 68,577,272 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

STRN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	24	7,756,065 - 7,890,343 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Strn3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	1,264,200 - 1,366,342 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624820	1,264,267 - 1,364,634 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Strn3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	65,041,391 - 65,127,052 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Strn3
163 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	814
Count of miRNA genes:	242
Interacting mature miRNAs:	284
Transcripts:	ENSRNOT00000007509, ENSRNOT00000068293
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590290	Uminl2	Urine mineral level QTL 2	3.96	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	6	44510974	89510974	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
4889933	Bss88	Bone structure and strength QTL 88	3.8		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	6	53684921	98684921	Rat
634307	Bp141	Blood pressure QTL 141	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	40957564	85957564	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	45153786	90153786	Rat
5684992	Bmd83	Bone mineral density QTL 82	4.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	6	53684921	98684921	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	31185002	76185002	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	63457441	94939581	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	46047353	91047353	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
9590140	Scort4	Serum corticosterone level QTL 4	14.49	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	44510974	89510974	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
9590306	Scort18	Serum corticosterone level QTL 18	2.88	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	44510974	89510974	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	33328841	78328841	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	63037319	95934232	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	30937632	75937632	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	33328841	78328841	Rat
6893340	Cm77	Cardiac mass QTL 77	0.26	0.57	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	39028659	86867923	Rat
5684963	Bss99	Bone structure and strength QTL 99	3.1		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	6	53684921	98684921	Rat
1300143	Rf14	Renal function QTL 14	2.92		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	40163183	85163183	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	63457441	94939581	Rat

Markers in Region

D6Rat130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	69,116,420 - 69,116,571 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	72,444,999 - 72,445,149	NCBI	Rnor6.0
Rnor_5.0	6	82,009,158 - 82,009,308	UniSTS	Rnor5.0
RGSC_v3.4	6	71,777,628 - 71,777,778	UniSTS	RGSC3.4
Celera	6	67,992,267 - 67,992,425	UniSTS
RH 3.4 Map	6	497.4	UniSTS
RH 3.4 Map	6	497.4	RGD
RH 2.0 Map	6	660.8	RGD
SHRSP x BN Map	6	44.2699	RGD
Cytogenetic Map	6	q22	UniSTS

BE107927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	69,134,763 - 69,134,919 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	72,463,338 - 72,463,493	NCBI	Rnor6.0
Rnor_5.0	6	82,027,497 - 82,027,652	UniSTS	Rnor5.0
RGSC_v3.4	6	71,795,967 - 71,796,122	UniSTS	RGSC3.4
Celera	6	68,010,391 - 68,010,546	UniSTS
RH 3.4 Map	6	507.2	UniSTS
Cytogenetic Map	6	q22	UniSTS

AI228304

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	69,068,335 - 69,068,498 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	72,396,919 - 72,397,081	NCBI	Rnor6.0
Rnor_5.0	6	81,961,079 - 81,961,241	UniSTS	Rnor5.0
RGSC_v3.4	6	71,729,549 - 71,729,711	UniSTS	RGSC3.4
Celera	6	67,944,136 - 67,944,298	UniSTS
RH 3.4 Map	6	507.5	UniSTS
Cytogenetic Map	6	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001029897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY026526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ473607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077578 ⟹ ENSRNOP00000074395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl
Rnor_6.0 Ensembl	6	72,376,330 - 72,462,658 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088720 ⟹ ENSRNOP00000071600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl
Rnor_6.0 Ensembl	6	72,377,699 - 72,462,657 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106600 ⟹ ENSRNOP00000087402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111997 ⟹ ENSRNOP00000081686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	74,783,156 - 74,869,473 (-)	Ensembl
mRatBN7.2 Ensembl	6	69,047,776 - 69,134,102 (-)	Ensembl

RefSeq Acc Id:

NM_001029897 ⟹ NP_001025068

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	74,783,156 - 74,869,473 (-)	NCBI
mRatBN7.2	6	69,047,776 - 69,134,102 (-)	NCBI
Rnor_6.0	6	72,376,360 - 72,462,676 (-)	NCBI
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI
RGSC_v3.4	6	71,708,959 - 71,795,287 (-)	RGD
Celera	6	67,923,577 - 68,009,729 (-)	NCBI

Sequence:

show sequence

AAAGTGAGTGAGTGAGACGGGCAGATGGAGGAGGGACTGTAATGGCGGCGGCCGGCAGCTCCCT
GCTCTGATCCGCGGCAAGCACACCGCAGCGACCCCCTCCCCGGCCCTCTCCCGGCCGGACCCCC
GCCCTGCCGTCAGCGCGGGGCCACCGTCCCGGCCCTCTCCGCAGCTGTCGGTGTCTCGCTCTGC
GCCCCAACCGGGGCCCCACACACAATGGACGAGCTGGCCGGAGGCGGCGGCGGCCAGGGGATGG
CGGTCCCTCCCCGACCGCAGCAGGGACCCGGGGGGAACCTGAGCCTTCCGCCGGGAGCGAACGG
AGCGCCGGGCGGTGGGGGTCCTCCGGCCGCCGAGACGGCGGGGCCCCCGGCAGGCCCCGAGCTG
TCCCGGCCGCAACAGTACACTATTCCGGGAATACTGCACTACATCCAGCACGAGTGGGCTCGGT
TCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAGGCACGAATTGCATTTTT
ACAAGGTGAAAGGAAAGGTCAAGAAAATTTGAAGAAGGATTTAGTGAGAAGAATAAAGATGTTA
GAGTATGCATTAAAACAAGAAAGGGCAAAGTATCACAAATTAAAATATGGCACAGAACTGAACC
AAGGTGATTTGAAAATGCCCACCTTTGAATCAGAGGAAACCAAAGATGCGGAGGCTCCTCCAGC
CCAAAACAGCCAGCTGACGTGGAAGCAAGGCAGACAGCTGTTAAGACAGTATCTTCAGGAAGTA
GGATATACAGATACAATATTAGATGTACGATCTCAGCGGGTAAGGTCATTACTTGGACTGTCTA
ATTCAGAGCCAAATGGATCCATAGAAGCAAAGAATTTAGAACAGATCCTGAATGGTGGTGAATC
TCCTAAACAAAAAGGACAAGAAATCAAAAGGCCCTCTGGTGATGTTCTTGAGACATTCAATTTC
TTAGAAAATGCCGATGACAGTGACGAAGAAGAAAATGACATGATTGAGGGCATCCCGGAAGGAA
AAGACAAACTTCGGATCCATAAGCACAAAATAGGTAATGAAGGTTTAGCTGCTGACTTAACTGA
TGATCCTGATACTGAGGAAGCACTGAAAGAATTCGACTTTTTAGTGACTGCAGAAGATGGTGAA
GGGGCTGGTGAAGCACGGAGTTCAGGGGATGGTACAGAATGGGATAAGGATGACCTCTCCCCCA
CTGCTGAGGTTTGGGATGTAGACCAGGGGCTAATGAGTAAGCTGAAGGAGCAGTACAAGAAGGA
GCGGAAGGGGAAGAGAGGGGCAAAGAGGGTCAACAGGACAAACCTCTGCGACATGATAACTGAT
CTGGGAGATGATGAGCTGCCCCACATCCCTTCAGGAATCATTAATCAGTCTAGGTCAGCCTCTA
CTAGAATGACTGATCATGAAGGTTCAAGAGCAGAGGAAGCTGAACCAATAACGTTTCCATCTGG
AGGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGAC
CTTGCAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGATTTGCCTGCCAATAAAGATG
CCTTGCGAAAGACTTGGAACCCCAAGTATACACTACGCAGTCACTTTGATGGCGTGAGAGCATT
AGCTTTCCACCCTGTAGAACCTGTGCTTGTTACTGCCTCTGAGGACCACACCCTGAAACTTTGG
AACTTGCAAAAGACAGTTCCTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGCCTATCTACACAT
TTAGGGCCCACATTGGCCCTGTCCTATCATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAG
TGGTGGTATTGACGCAACCATTCAGTGGTGGAATATGCCTAGTCCTAATGTGGATCCCTATGAT
ACATATGAGTCCCATGTTCTAGCTGGCACTTTAGTTGCTCATACAGATGCAGTCTGGGGTCTTG
CCTACAGTGGCATAAAAAATCAATTACTCTCTTGTTCAGCAGATGGCACTATTAGGTTATGGAA
TCCACAAGAAAAATTGCCATGTATTTGCACTTACAACGGAGACAAGGAACATGGAATACCTACA
TCAGTTGACTTTATAGGCTGTGATCCAGCTCATATGGTTACCTCTTTCAACACTGGTAGTGCGA
TAATTTATGATTTAGAAACATCACAGTCATTAGTGATGCTTTCCTCACAGGTGGATTCTGGTTT
ACAATCTAGTAATCACATTAACAGAGTAGTAAGTCACCCTACACTTCCTGTTACAATAACTGCC
CATGAAGATAGACACATCAAGTTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAG
CTCACTTGGATGCTGTTACAAGTTTAGCAGTAGATCCCAATGGAATCTATTTGATGTCTGGAAG
CCATGACTGCTCTATTAGATTATGGAATTTGGACAGTAAGACATGTGTACAAGAAATAACAGCC
CATAGGAAGAAATTGGATGAGTCAATTTATGATGTTGCTTTCCATCCGTCAAAGGCATATATCG
CCAGTGCAGGGGCTGATGCTCTTGCCAAAGTATTTGTGTGAACCAACATAGACTCGTGTTGTGG
GAAGAAAAGATTTACTTGGTCAGAAAGGGGGTCTGCATCACTGCCATCACGAAAGCTACTGATA
GGACACTACATGTGATCTGCCTGGTGAAAGCTGTTGGAGGCAGGCAGAAATTGGGAATCACATC
CTAATGTCAGGCTTATTAGTTTAACTGTAATTAACTGTATTTTGTGGGACAGAAAGAAAAAGGA
CTCCAGTATCTGTGCCCTGTACTGGATATGAACTGAGCGGTTTTTGTTTTTTGTTGTTTTTTTG
TTGTTTGTTTGTTTGTTTGTTTTTTTTAAGTGTTTAAGCCAATGTGGAGTCTGATCTTAGGGGA
AAAGGACTTTTTGTTGGACTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTGCTCTTGTGGGGA
AGCAAGCTCCAAGAGTAGCTTTTTTCATCTCTTAGTGATCTTACATTTATCAGTTGAATGCCAC
AGATTCCCTTTTAAACTTATTTTGCTTTAAAAAAAAGAAAAAAGAAAAAGAAAAAAGAGAGAAA
AGAAAATTTAACTTAAAATATTTTAGCATTAGTTGCACAAAATGTTTGGATAAAATTCTAGTTT
TTATAAGTCTTTTTATATATTTAGCCTGTCACAACAGTGCTCAAGATCATATTGATGTTTTTCT
GCATTATACAACCCTAAAACACAGAGATCTCACTAACCTGCCACCTATAACCACTTTCTTTCCT
CCTTTTGCCTAATACAGCTCAGCTAAGTCCTTCATAAAGATGATAATCTCCTTCGTCTACATGT
CTTCATAAACCAAGGACTATTAGTGAATTAAAACAAAGGTGTGGAGTTTAGTACTCCAGATGAA
CTCTTTAAAAACTAATCCTGACATCCTATCACTATGTGATATTTTGTACATCTTACTGTATTTA
CAAGTTTATTTATCAAGGATTATCCATCTTGCTAATGGCCTATTATTTATTTTACTTTTTGTTG
GTCTTTATATCCTTTTATTAATGCTCTAAAGGAACCTGTATATCTATTTTGGAATCTATTTTGT
TCGTGTTGAACAGTCTAAAATAGACTAAAAATGGAATATTTTATAGTTAAGTTACAAACCAAGG
TGTTTCTCCCCAAGATACTATCTTGATTTACCATGATTCCAAAACAAAATGATCTAGTTAAAAA
AAAAAATTGGAGGATATTTTATTACCATTACAAATAAGATATTTAAAAAACTTGAATCAGGATA
CAGAAGTCTGCTGGATTTGGACTAGTCTTCCCTGTTTTATTTTTTTAGATGTGCTTACTTTTAT
GGTGTAACTGAAGATTTTCTTTGTGTAATGCATGATTAAGACAATAAAGTATTTTTTCTAGTCT
TCCAAAAGCCTTTTCTGATCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGTTTTACAG
ACTATGAATCAGCAAATTTTTAAGATTGTACCACAGAGCAAACACACAGCTGTTGAAAAATAAT
GTATATAAAATGCATATAATAAATATTAAATTGTGTACCTGTA

hide sequence

RefSeq Acc Id:

XM_006240075 ⟹ XP_006240137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	74,783,156 - 74,869,407 (-)	NCBI
mRatBN7.2	6	69,047,776 - 69,134,097 (-)	NCBI
Rnor_6.0	6	72,376,360 - 72,462,671 (-)	NCBI
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI

Sequence:

show sequence

GAGTGAGTGAGACGGGCAGATGGAGGAGGGACTGTAATGGCGGCGGCCGGCAGCTCCCTGCTCT
GATCCGCGGCAAGCACACCGCAGCGACCCCCTCCCCGGCCCTCTCCCGGCCGGACCCCCGCCCT
GCCGTCAGCGCGGGGCCACCGTCCCGGCCCTCTCCGCAGCTGTCGGTGTCTCGCTCTGCGCCCC
AACCGGGGCCCCACACACAATGGACGAGCTGGCCGGAGGCGGCGGCGGCCAGGGGATGGCGGTC
CCTCCCCGACCGCAGCAGGGACCCGGGGGGAACCTGAGCCTTCCGCCGGGAGCGAACGGAGCGC
CGGGCGGTGGGGGTCCTCCGGCCGCCGAGACGGCGGGGCCCCCGGCAGGCCCCGAGCTGTCCCG
GCCGCAACAGTACACTATTCCGGGAATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAG
ATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAGGCACGAATTGCATTTTTACAAG
GTGAAAGGAAAGGTCAAGAAAATTTGAAGAAGGATTTAGTGAGAAGAATAAAGATGTTAGAGTA
TGCATTAAAACAAGAAAGGGCAAAGTATCACAAATTAAAATATGGCACAGAACTGAACCAAGGT
GATTTGAAAATGCCCACCTTTGAATCAGAGGAAACCAAAGATGCGGAGGCTCCTCCAGCCCAAA
ACAGCCAGCTGACGTGGAAGCAAGGCAGACAGCTGTTAAGACAGTATCTTCAGGAAGTAGGATA
TACAGATACAATATTAGATGTACGATCTCAGCGGGTAAGGTCATTACTTGGACTGTCTAATTCA
GAGCCAAATGGATCCATAGAAGCAAAGAATTTAGAACAGATCCTGAATGGTGGTGAATCTCCTA
AACAAAAAGGACAAGAAATCAAAAGGCCCTCTGGTGATGTTCTTGAGACATTCAATTTCTTAGA
AAATGCCGATGACAGTGACGAAGAAGAAAATGACATGATTGAGGGCATCCCGGAAGGAAAAGAC
AAACTTCGGATCCATAAGCACAAAATAGGTAATGAAGGTTTAGCTGCTGACTTAACTGATGATC
CTGATACTGAGGAAGCACTGAAAGAATTCGACTTTTTAGTGACTGCAGAAGATGGTGAAGGGGC
TGGTGAAGCACGGAGTTCAGGGGATGGTACAGAATGGGGGGTCAACAGGACAAACCTCTGCGAC
ATGATAACTGATCTGGGAGATGATGAGCTGCCCCACATCCCTTCAGGAATCATTAATCAGTCTA
GGTCAGCCTCTACTAGAATGACTGATCATGAAGGTTCAAGAGCAGAGGAAGCTGAACCAATAAC
GTTTCCATCTGGAGGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTG
GGCCTTGGAGACCTTGCAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGATTTGCCTG
CCAATAAAGATGCCTTGCGAAAGACTTGGAACCCCAAGTATACACTACGCAGTCACTTTGATGG
CGTGAGAGCATTAGCTTTCCACCCTGTAGAACCTGTGCTTGTTACTGCCTCTGAGGACCACACC
CTGAAACTTTGGAACTTGCAAAAGACAGTTCCTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGC
CTATCTACACATTTAGGGCCCACATTGGCCCTGTCCTATCATTAGCTATTAGTTCTAATGGAGA
ACAGTGTTTTAGTGGTGGTATTGACGCAACCATTCAGTGGTGGAATATGCCTAGTCCTAATGTG
GATCCCTATGATACATATGAGTCCCATGTTCTAGCTGGCACTTTAGTTGCTCATACAGATGCAG
TCTGGGGTCTTGCCTACAGTGGCATAAAAAATCAATTACTCTCTTGTTCAGCAGATGGCACTAT
TAGGTTATGGAATCCACAAGAAAAATTGCCATGTATTTGCACTTACAACGGAGACAAGGAACAT
GGAATACCTACATCAGTTGACTTTATAGGCTGTGATCCAGCTCATATGGTTACCTCTTTCAACA
CTGGTAGTGCGATAATTTATGATTTAGAAACATCACAGTCATTAGTGATGCTTTCCTCACAGGT
GGATTCTGGTTTACAATCTAGTAATCACATTAACAGAGTAGTAAGTCACCCTACACTTCCTGTT
ACAATAACTGCCCATGAAGATAGACACATCAAGTTTTTTGACAATAAAACGGGTAAAATGATCC
ATTCTATGGTAGCTCACTTGGATGCTGTTACAAGTTTAGCAGTAGATCCCAATGGAATCTATTT
GATGTCTGGAAGCCATGACTGCTCTATTAGATTATGGAATTTGGACAGTAAGACATGTGTACAA
GAAATAACAGCCCATAGGAAGAAATTGGATGAGTCAATTTATGATGTTGCTTTCCATCCGTCAA
AGGCATATATCGCCAGTGCAGGGGCTGATGCTCTTGCCAAAGTATTTGTGTGAACCAACATAGA
CTCGTGTTGTGGGAAGAAAAGATTTACTTGGTCAGAAAGGGGGTCTGCATCACTGCCATCACGA
AAGCTACTGATAGGACACTACATGTGATCTGCCTGGTGAAAGCTGTTGGAGGCAGGCAGAAATT
GGGAATCACATCCTAATGTCAGGCTTATTAGTTTAACTGTAATTAACTGTATTTTGTGGGACAG
AAAGAAAAAGGACTCCAGTATCTGTGCCCTGTACTGGATATGAACTGAGCGGTTTTTGTTTTTT
GTTGTTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTTTTTAAGTGTTTAAGCCAATGTGGAGTCT
GATCTTAGGGGAAAAGGACTTTTTGTTGGACTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTG
CTCTTGTGGGGAAGCAAGCTCCAAGAGTAGCTTTTTTCATCTCTTAGTGATCTTACATTTATCA
GTTGAATGCCACAGATTCCCTTTTAAACTTATTTTGCTTTAAAAAAAAGAAAAAAGAAAAAGAA
AAAAGAGAGAAAAGAAAATTTAACTTAAAATATTTTAGCATTAGTTGCACAAAATGTTTGGATA
AAATTCTAGTTTTTATAAGTCTTTTTATATATTTAGCCTGTCACAACAGTGCTCAAGATCATAT
TGATGTTTTTCTGCATTATACAACCCTAAAACACAGAGATCTCACTAACCTGCCACCTATAACC
ACTTTCTTTCCTCCTTTTGCCTAATACAGCTCAGCTAAGTCCTTCATAAAGATGATAATCTCCT
TCGTCTACATGTCTTCATAAACCAAGGACTATTAGTGAATTAAAACAAAGGTGTGGAGTTTAGT
ACTCCAGATGAACTCTTTAAAAACTAATCCTGACATCCTATCACTATGTGATATTTTGTACATC
TTACTGTATTTACAAGTTTATTTATCAAGGATTATCCATCTTGCTAATGGCCTATTATTTATTT
TACTTTTTGTTGGTCTTTATATCCTTTTATTAATGCTCTAAAGGAACCTGTATATCTATTTTGG
AATCTATTTTGTTCGTGTTGAACAGTCTAAAATAGACTAAAAATGGAATATTTTATAGTTAAGT
TACAAACCAAGGTGTTTCTCCCCAAGATACTATCTTGATTTACCATGATTCCAAAACAAAATGA
TCTAGTTAAAAAAAAAAATTGGAGGATATTTTATTACCATTACAAATAAGATATTTAAAAAACT
TGAATCAGGATACAGAAGTCTGCTGGATTTGGACTAGTCTTCCCTGTTTTATTTTTTTAGATGT
GCTTACTTTTATGGTGTAACTGAAGATTTTCTTTGTGTAATGCATGATTAAGACAATAAAGTAT
TTTTTCTAGTCTTCCAAAAGCCTTTTCTGATCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTT
TTTGTTTTACAGACTATGAATCAGCAAATTTTTAAGATTGTACCACAGAGCAAACACACAGCTG
TTGAAAAATAATGTATATAAAATGCATATAATAAATATTAAATTGTGTACCTGTA

hide sequence

RefSeq Acc Id:

XM_006240076 ⟹ XP_006240138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	74,783,156 - 74,869,407 (-)	NCBI
mRatBN7.2	6	69,047,776 - 69,134,097 (-)	NCBI
Rnor_6.0	6	72,376,360 - 72,462,671 (-)	NCBI
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI

Sequence:

show sequence

GAGTGAGTGAGACGGGCAGATGGAGGAGGGACTGTAATGGCGGCGGCCGGCAGCTCCCTGCTCT
GATCCGCGGCAAGCACACCGCAGCGACCCCCTCCCCGGCCCTCTCCCGGCCGGACCCCCGCCCT
GCCGTCAGCGCGGGGCCACCGTCCCGGCCCTCTCCGCAGCTGTCGGTGTCTCGCTCTGCGCCCC
AACCGGGGCCCCACACACAATGGACGAGCTGGCCGGAGGCGGCGGCGGCCAGGGGATGGCGGTC
CCTCCCCGACCGCAGCAGGGACCCGGGGGGAACCTGAGCCTTCCGCCGGGAGCGAACGGAGCGC
CGGGCGGTGGGGGTCCTCCGGCCGCCGAGACGGCGGGGCCCCCGGCAGGCCCCGAGCTGTCCCG
GCCGCAACAGTACACTATTCCGGGAATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAG
ATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAGGCACGAATTGCATTTTTACAAG
GTGAAAGGAAAGGTCAAGAAAATTTGAAGAAGGATTTAGTGAGAAGAATAAAGATGTTAGAGTA
TGCATTAAAACAAGAAAGGGCAAAGTATCACAAATTAAAATATGGCACAGAACTGAACCAAGGT
GATTTGAAAATGCCCACCTTTGAATCAGAGGAAACCAAAGATGCGGAGGCTCCTCCAGCCCAAA
ACAGCCAGCTGACGTGGAAGCAAGGCAGACAGCTGTTAAGACAGTATCTTCAGGAAGTAGGATA
TACAGATACAATATTAGATGTACGATCTCAGCGGGTAAGGTCATTACTTGGACTGTCTAATTCA
GAGCCAAATGGATCCATAGAAGCAAAGAATTTAGAACAGATCCTGAATGGTGGTGAATCTCCTA
AACAAAAAGGACAAGAAATCAAAAGGCCCTCTGGTGATGTTCTTGAGACATTCAATTTCTTAGA
AAATGCCGATGACAGTGACGAAGAAGAAAATGACATGATTGAGGGCATCCCGGAAGGAAAAGAC
AAACTTCGGATCCATAAGCACAAAATAGGTAATGAAGGTTTAGCTGCTGACTTAACTGATGATC
CTGATACTGAGGAAGCACTGAAAGAATTCGACTTTTTAGTGACTGCAGAAGATGGTGAAGGGGC
TGGTGAAGCACGGAGTTCAGGGGATGGTACAGAATGGGATAAGGATGACCTCTCCCCCACTGCT
GAGGTTTGGGATGTAGACCAGGGGCTAATGAGTAAGCTGAAGGAGCAGTACAAGAAGGAGCGGA
AGGGGAAGAGAGGGGCAAAGACTGAACCAATAACGTTTCCATCTGGAGGAGGCAAGTCATTTAT
TATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACCTTGCAGACTTGACGGTA
ACAAATGATGCAGACTATAGTTATGATTTGCCTGCCAATAAAGATGCCTTGCGAAAGACTTGGA
ACCCCAAGTATACACTACGCAGTCACTTTGATGGCGTGAGAGCATTAGCTTTCCACCCTGTAGA
ACCTGTGCTTGTTACTGCCTCTGAGGACCACACCCTGAAACTTTGGAACTTGCAAAAGACAGTT
CCTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGCCTATCTACACATTTAGGGCCCACATTGGCC
CTGTCCTATCATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAGTGGTGGTATTGACGCAAC
CATTCAGTGGTGGAATATGCCTAGTCCTAATGTGGATCCCTATGATACATATGAGTCCCATGTT
CTAGCTGGCACTTTAGTTGCTCATACAGATGCAGTCTGGGGTCTTGCCTACAGTGGCATAAAAA
ATCAATTACTCTCTTGTTCAGCAGATGGCACTATTAGGTTATGGAATCCACAAGAAAAATTGCC
ATGTATTTGCACTTACAACGGAGACAAGGAACATGGAATACCTACATCAGTTGACTTTATAGGC
TGTGATCCAGCTCATATGGTTACCTCTTTCAACACTGGTAGTGCGATAATTTATGATTTAGAAA
CATCACAGTCATTAGTGATGCTTTCCTCACAGGTGGATTCTGGTTTACAATCTAGTAATCACAT
TAACAGAGTAGTAAGTCACCCTACACTTCCTGTTACAATAACTGCCCATGAAGATAGACACATC
AAGTTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCACTTGGATGCTGTTA
CAAGTTTAGCAGTAGATCCCAATGGAATCTATTTGATGTCTGGAAGCCATGACTGCTCTATTAG
ATTATGGAATTTGGACAGTAAGACATGTGTACAAGAAATAACAGCCCATAGGAAGAAATTGGAT
GAGTCAATTTATGATGTTGCTTTCCATCCGTCAAAGGCATATATCGCCAGTGCAGGGGCTGATG
CTCTTGCCAAAGTATTTGTGTGAACCAACATAGACTCGTGTTGTGGGAAGAAAAGATTTACTTG
GTCAGAAAGGGGGTCTGCATCACTGCCATCACGAAAGCTACTGATAGGACACTACATGTGATCT
GCCTGGTGAAAGCTGTTGGAGGCAGGCAGAAATTGGGAATCACATCCTAATGTCAGGCTTATTA
GTTTAACTGTAATTAACTGTATTTTGTGGGACAGAAAGAAAAAGGACTCCAGTATCTGTGCCCT
GTACTGGATATGAACTGAGCGGTTTTTGTTTTTTGTTGTTTTTTTGTTGTTTGTTTGTTTGTTT
GTTTTTTTTAAGTGTTTAAGCCAATGTGGAGTCTGATCTTAGGGGAAAAGGACTTTTTGTTGGA
CTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTGCTCTTGTGGGGAAGCAAGCTCCAAGAGTAG
CTTTTTTCATCTCTTAGTGATCTTACATTTATCAGTTGAATGCCACAGATTCCCTTTTAAACTT
ATTTTGCTTTAAAAAAAAGAAAAAAGAAAAAGAAAAAAGAGAGAAAAGAAAATTTAACTTAAAA
TATTTTAGCATTAGTTGCACAAAATGTTTGGATAAAATTCTAGTTTTTATAAGTCTTTTTATAT
ATTTAGCCTGTCACAACAGTGCTCAAGATCATATTGATGTTTTTCTGCATTATACAACCCTAAA
ACACAGAGATCTCACTAACCTGCCACCTATAACCACTTTCTTTCCTCCTTTTGCCTAATACAGC
TCAGCTAAGTCCTTCATAAAGATGATAATCTCCTTCGTCTACATGTCTTCATAAACCAAGGACT
ATTAGTGAATTAAAACAAAGGTGTGGAGTTTAGTACTCCAGATGAACTCTTTAAAAACTAATCC
TGACATCCTATCACTATGTGATATTTTGTACATCTTACTGTATTTACAAGTTTATTTATCAAGG
ATTATCCATCTTGCTAATGGCCTATTATTTATTTTACTTTTTGTTGGTCTTTATATCCTTTTAT
TAATGCTCTAAAGGAACCTGTATATCTATTTTGGAATCTATTTTGTTCGTGTTGAACAGTCTAA
AATAGACTAAAAATGGAATATTTTATAGTTAAGTTACAAACCAAGGTGTTTCTCCCCAAGATAC
TATCTTGATTTACCATGATTCCAAAACAAAATGATCTAGTTAAAAAAAAAAATTGGAGGATATT
TTATTACCATTACAAATAAGATATTTAAAAAACTTGAATCAGGATACAGAAGTCTGCTGGATTT
GGACTAGTCTTCCCTGTTTTATTTTTTTAGATGTGCTTACTTTTATGGTGTAACTGAAGATTTT
CTTTGTGTAATGCATGATTAAGACAATAAAGTATTTTTTCTAGTCTTCCAAAAGCCTTTTCTGA
TCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGTTTTACAGACTATGAATCAGCAAATT
TTTAAGATTGTACCACAGAGCAAACACACAGCTGTTGAAAAATAATGTATATAAAATGCATATA
ATAAATATTAAATTGTGTACCTGTA

hide sequence

RefSeq Acc Id:

XM_006240077 ⟹ XP_006240139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	74,783,156 - 74,869,407 (-)	NCBI
mRatBN7.2	6	69,047,776 - 69,134,097 (-)	NCBI
Rnor_6.0	6	72,376,360 - 72,462,671 (-)	NCBI
Rnor_5.0	6	81,940,489 - 82,026,830 (-)	NCBI

Sequence:

show sequence

GAGTGAGTGAGACGGGCAGATGGAGGAGGGACTGTAATGGCGGCGGCCGGCAGCTCCCTGCTCT
GATCCGCGGCAAGCACACCGCAGCGACCCCCTCCCCGGCCCTCTCCCGGCCGGACCCCCGCCCT
GCCGTCAGCGCGGGGCCACCGTCCCGGCCCTCTCCGCAGCTGTCGGTGTCTCGCTCTGCGCCCC
AACCGGGGCCCCACACACAATGGACGAGCTGGCCGGAGGCGGCGGCGGCCAGGGGATGGCGGTC
CCTCCCCGACCGCAGCAGGGACCCGGGGGGAACCTGAGCCTTCCGCCGGGAGCGAACGGAGCGC
CGGGCGGTGGGGGTCCTCCGGCCGCCGAGACGGCGGGGCCCCCGGCAGGCCCCGAGCTGTCCCG
GCCGCAACAGTACACTATTCCGGGAATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAG
ATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAGGCACGAATTGCATTTTTACAAG
GTGAAAGGAAAGGTCAAGAAAATTTGAAGAAGGATTTAGTGAGAAGAATAAAGATGTTAGAGTA
TGCATTAAAACAAGAAAGGGCAAAGTATCACAAATTAAAATATGGCACAGAACTGAACCAAGGT
GATTTGAAAATGCCCACCTTTGAATCAGAGGAAACCAAAGATGCGGAGGCTCCTCCAGCCCAAA
ACAGCCAGCTGACGTGGAAGCAAGGCAGACAGCTGTTAAGACAGTATCTTCAGGAAGTAGGATA
TACAGATACAATATTAGATGTACGATCTCAGCGGGTAAGGTCATTACTTGGACTGTCTAATTCA
GAGCCAAATGGATCCATAGAAGCAAAGAATTTAGAACAGATCCTGAATGGTGGTGAATCTCCTA
AACAAAAAGGACAAGAAATCAAAAGGCCCTCTGGTGATGTTCTTGAGACATTCAATTTCTTAGA
AAATGCCGATGACAGTGACGAAGAAGAAAATGACATGATTGAGGGCATCCCGGAAGGAAAAGAC
AAACTTCGGATCCATAAGCACAAAATAGGTAATGAAGGTTTAGCTGCTGACTTAACTGATGATC
CTGATACTGAGGAAGCACTGAAAGAATTCGACTTTTTAGTGACTGCAGAAGATGGTGAAGGGGC
TGGTGAAGCACGGAGTTCAGGGGATGGTACAGAATGGGCTGAACCAATAACGTTTCCATCTGGA
GGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACC
TTGCAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGATTTGCCTGCCAATAAAGATGC
CTTGCGAAAGACTTGGAACCCCAAGTATACACTACGCAGTCACTTTGATGGCGTGAGAGCATTA
GCTTTCCACCCTGTAGAACCTGTGCTTGTTACTGCCTCTGAGGACCACACCCTGAAACTTTGGA
ACTTGCAAAAGACAGTTCCTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGCCTATCTACACATT
TAGGGCCCACATTGGCCCTGTCCTATCATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAGT
GGTGGTATTGACGCAACCATTCAGTGGTGGAATATGCCTAGTCCTAATGTGGATCCCTATGATA
CATATGAGTCCCATGTTCTAGCTGGCACTTTAGTTGCTCATACAGATGCAGTCTGGGGTCTTGC
CTACAGTGGCATAAAAAATCAATTACTCTCTTGTTCAGCAGATGGCACTATTAGGTTATGGAAT
CCACAAGAAAAATTGCCATGTATTTGCACTTACAACGGAGACAAGGAACATGGAATACCTACAT
CAGTTGACTTTATAGGCTGTGATCCAGCTCATATGGTTACCTCTTTCAACACTGGTAGTGCGAT
AATTTATGATTTAGAAACATCACAGTCATTAGTGATGCTTTCCTCACAGGTGGATTCTGGTTTA
CAATCTAGTAATCACATTAACAGAGTAGTAAGTCACCCTACACTTCCTGTTACAATAACTGCCC
ATGAAGATAGACACATCAAGTTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGC
TCACTTGGATGCTGTTACAAGTTTAGCAGTAGATCCCAATGGAATCTATTTGATGTCTGGAAGC
CATGACTGCTCTATTAGATTATGGAATTTGGACAGTAAGACATGTGTACAAGAAATAACAGCCC
ATAGGAAGAAATTGGATGAGTCAATTTATGATGTTGCTTTCCATCCGTCAAAGGCATATATCGC
CAGTGCAGGGGCTGATGCTCTTGCCAAAGTATTTGTGTGAACCAACATAGACTCGTGTTGTGGG
AAGAAAAGATTTACTTGGTCAGAAAGGGGGTCTGCATCACTGCCATCACGAAAGCTACTGATAG
GACACTACATGTGATCTGCCTGGTGAAAGCTGTTGGAGGCAGGCAGAAATTGGGAATCACATCC
TAATGTCAGGCTTATTAGTTTAACTGTAATTAACTGTATTTTGTGGGACAGAAAGAAAAAGGAC
TCCAGTATCTGTGCCCTGTACTGGATATGAACTGAGCGGTTTTTGTTTTTTGTTGTTTTTTTGT
TGTTTGTTTGTTTGTTTGTTTTTTTTAAGTGTTTAAGCCAATGTGGAGTCTGATCTTAGGGGAA
AAGGACTTTTTGTTGGACTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTGCTCTTGTGGGGAA
GCAAGCTCCAAGAGTAGCTTTTTTCATCTCTTAGTGATCTTACATTTATCAGTTGAATGCCACA
GATTCCCTTTTAAACTTATTTTGCTTTAAAAAAAAGAAAAAAGAAAAAGAAAAAAGAGAGAAAA
GAAAATTTAACTTAAAATATTTTAGCATTAGTTGCACAAAATGTTTGGATAAAATTCTAGTTTT
TATAAGTCTTTTTATATATTTAGCCTGTCACAACAGTGCTCAAGATCATATTGATGTTTTTCTG
CATTATACAACCCTAAAACACAGAGATCTCACTAACCTGCCACCTATAACCACTTTCTTTCCTC
CTTTTGCCTAATACAGCTCAGCTAAGTCCTTCATAAAGATGATAATCTCCTTCGTCTACATGTC
TTCATAAACCAAGGACTATTAGTGAATTAAAACAAAGGTGTGGAGTTTAGTACTCCAGATGAAC
TCTTTAAAAACTAATCCTGACATCCTATCACTATGTGATATTTTGTACATCTTACTGTATTTAC
AAGTTTATTTATCAAGGATTATCCATCTTGCTAATGGCCTATTATTTATTTTACTTTTTGTTGG
TCTTTATATCCTTTTATTAATGCTCTAAAGGAACCTGTATATCTATTTTGGAATCTATTTTGTT
CGTGTTGAACAGTCTAAAATAGACTAAAAATGGAATATTTTATAGTTAAGTTACAAACCAAGGT
GTTTCTCCCCAAGATACTATCTTGATTTACCATGATTCCAAAACAAAATGATCTAGTTAAAAAA
AAAAATTGGAGGATATTTTATTACCATTACAAATAAGATATTTAAAAAACTTGAATCAGGATAC
AGAAGTCTGCTGGATTTGGACTAGTCTTCCCTGTTTTATTTTTTTAGATGTGCTTACTTTTATG
GTGTAACTGAAGATTTTCTTTGTGTAATGCATGATTAAGACAATAAAGTATTTTTTCTAGTCTT
CCAAAAGCCTTTTCTGATCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGTTTTACAGA
CTATGAATCAGCAAATTTTTAAGATTGTACCACAGAGCAAACACACAGCTGTTGAAAAATAATG
TATATAAAATGCATATAATAAATATTAAATTGTGTACCTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001025068	(Get FASTA)	NCBI Sequence Viewer
	XP_006240137	(Get FASTA)	NCBI Sequence Viewer
	XP_006240138	(Get FASTA)	NCBI Sequence Viewer
	XP_006240139	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK07683	(Get FASTA)	NCBI Sequence Viewer
	ABF15157	(Get FASTA)	NCBI Sequence Viewer
	EDM03378	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071600
	ENSRNOP00000074395
	ENSRNOP00000074395.1
	ENSRNOP00000081686
	ENSRNOP00000087402
GenBank Protein	P58405	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001025068 ⟸ NM_001029897

- UniProtKB:

P58405 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDELAGGGGGQGMAVPPRPQQGPGGNLSLPPGANGAPGGGGPPAAETAGPPAGPELSRPQQYTI
PGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQER
AKYHKLKYGTELNQGDLKMPTFESEETKDAEAPPAQNSQLTWKQGRQLLRQYLQEVGYTDTILD
VRSQRVRSLLGLSNSEPNGSIEAKNLEQILNGGESPKQKGQEIKRPSGDVLETFNFLENADDSD
EEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSS
GDGTEWDKDDLSPTAEVWDVDQGLMSKLKEQYKKERKGKRGAKRVNRTNLCDMITDLGDDELPH
IPSGIINQSRSASTRMTDHEGSRAEEAEPITFPSGGGKSFIMGSDDVLLSVLGLGDLADLTVTN
DADYSYDLPANKDALRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPA
KKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNMPSPNVDPYDTYESHVLA
GTLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWNPQEKLPCICTYNGDKEHGIPTSVDFIGCD
PAHMVTSFNTGSAIIYDLETSQSLVMLSSQVDSGLQSSNHINRVVSHPTLPVTITAHEDRHIKF
FDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDES
IYDVAFHPSKAYIASAGADALAKVFV

hide sequence

RefSeq Acc Id:	XP_006240139 ⟸ XM_006240077
- Peptide Label:	isoform X3
- UniProtKB:	E9PT82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDELAGGGGGQGMAVPPRPQQGPGGNLSLPPGANGAPGGGGPPAAETAGPPAGPELSRPQQYTI PGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQER AKYHKLKYGTELNQGDLKMPTFESEETKDAEAPPAQNSQLTWKQGRQLLRQYLQEVGYTDTILD VRSQRVRSLLGLSNSEPNGSIEAKNLEQILNGGESPKQKGQEIKRPSGDVLETFNFLENADDSD EEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSS GDGTEWAEPITFPSGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDALRKTWN PKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGP VLSLAISSNGEQCFSGGIDATIQWWNMPSPNVDPYDTYESHVLAGTLVAHTDAVWGLAYSGIKN QLLSCSADGTIRLWNPQEKLPCICTYNGDKEHGIPTSVDFIGCDPAHMVTSFNTGSAIIYDLET SQSLVMLSSQVDSGLQSSNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVT SLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADA LAKVFV hide sequence

RefSeq Acc Id:	XP_006240137 ⟸ XM_006240075
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AGH7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDELAGGGGGQGMAVPPRPQQGPGGNLSLPPGANGAPGGGGPPAAETAGPPAGPELSRPQQYTI PGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQER AKYHKLKYGTELNQGDLKMPTFESEETKDAEAPPAQNSQLTWKQGRQLLRQYLQEVGYTDTILD VRSQRVRSLLGLSNSEPNGSIEAKNLEQILNGGESPKQKGQEIKRPSGDVLETFNFLENADDSD EEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSS GDGTEWGVNRTNLCDMITDLGDDELPHIPSGIINQSRSASTRMTDHEGSRAEEAEPITFPSGGG KSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDALRKTWNPKYTLRSHFDGVRALAF HPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGG IDATIQWWNMPSPNVDPYDTYESHVLAGTLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWNPQ EKLPCICTYNGDKEHGIPTSVDFIGCDPAHMVTSFNTGSAIIYDLETSQSLVMLSSQVDSGLQS SNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHD CSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV hide sequence

RefSeq Acc Id:	XP_006240138 ⟸ XM_006240076
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZUH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDELAGGGGGQGMAVPPRPQQGPGGNLSLPPGANGAPGGGGPPAAETAGPPAGPELSRPQQYTI PGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQER AKYHKLKYGTELNQGDLKMPTFESEETKDAEAPPAQNSQLTWKQGRQLLRQYLQEVGYTDTILD VRSQRVRSLLGLSNSEPNGSIEAKNLEQILNGGESPKQKGQEIKRPSGDVLETFNFLENADDSD EEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSS GDGTEWDKDDLSPTAEVWDVDQGLMSKLKEQYKKERKGKRGAKTEPITFPSGGGKSFIMGSDDV LLSVLGLGDLADLTVTNDADYSYDLPANKDALRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTA SEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNM PSPNVDPYDTYESHVLAGTLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWNPQEKLPCICTYN GDKEHGIPTSVDFIGCDPAHMVTSFNTGSAIIYDLETSQSLVMLSSQVDSGLQSSNHINRVVSH PTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDS KTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV hide sequence

Ensembl Acc Id:

ENSRNOP00000074395 ⟸ ENSRNOT00000077578

Ensembl Acc Id:

ENSRNOP00000071600 ⟸ ENSRNOT00000088720

Ensembl Acc Id:

ENSRNOP00000087402 ⟸ ENSRNOT00000106600

Ensembl Acc Id:

ENSRNOP00000081686 ⟸ ENSRNOT00000111997

Protein Domains

Striatin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P58405-F1-model_v2	AlphaFold	P58405	1-794	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694588

Promoter ID:

EPDNEW_R5111

Type:

initiation region

Name:

Strn3_1

Description:

striatin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	72,462,654 - 72,462,714	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621827	AgrOrtholog
BioCyc Gene	G2FUF-37587	BioCyc
Ensembl Genes	ENSRNOG00000060335	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000077578	ENTREZGENE
	ENSRNOT00000077578.2	UniProtKB/Swiss-Prot
	ENSRNOT00000088720	ENTREZGENE
	ENSRNOT00000106600	ENTREZGENE
	ENSRNOT00000111997	ENTREZGENE
Gene3D-CATH	1.20.5.300	UniProtKB/Swiss-Prot
	2.130.10.10	UniProtKB/Swiss-Prot
InterPro	G-protein_beta_WD-40_rep	UniProtKB/Swiss-Prot
	Striatin_N	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat	UniProtKB/Swiss-Prot
	WD40_repeat_CS	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
	WD_repeat_striatin	UniProtKB/Swiss-Prot
KEGG Report	rno:114520	UniProtKB/Swiss-Prot
NCBI Gene	114520	ENTREZGENE
PANTHER	STRIATIN	UniProtKB/Swiss-Prot
	STRIATIN-3	UniProtKB/Swiss-Prot
Pfam	Striatin	UniProtKB/Swiss-Prot
	WD40	UniProtKB/Swiss-Prot
PhenoGen	Strn3	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/Swiss-Prot
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot
	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000060335	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZUH2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGH7	ENTREZGENE, UniProtKB/TrEMBL
	A6HBH3_RAT	UniProtKB/TrEMBL
	E9PT82	ENTREZGENE, UniProtKB/TrEMBL
	P58405	ENTREZGENE
	Q1KLB7_RAT	UniProtKB/TrEMBL
	STRN3_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-02	Strn3	striatin 3	Strn3	striatin, calmodulin binding protein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Strn3	striatin, calmodulin binding protein 3	Gs2na	nuclear autoantigen	Symbol and Name updated	1299863	APPROVED
2002-08-07	Gs2na	nuclear autoantigen			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains six WD-40 repeats	708334

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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