Rplp1 (ribosomal protein lateral stalk subunit P1) - Rat Genome Database

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Gene: Rplp1 (ribosomal protein lateral stalk subunit P1) Rattus norvegicus
Analyze
Symbol: Rplp1 (Ensembl: AABR07053837.1)
Name: ribosomal protein lateral stalk subunit P1
RGD ID: 621774
Description: Enables ribonucleoprotein complex binding activity. Involved in cellular response to Thyroid stimulating hormone; cellular response to cAMP; and positive regulation of translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPLP1 (ribosomal protein lateral stalk subunit P1); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S acidic ribosomal protein P1; large ribosomal subunit protein P1; MGC72935; ribosomal protein, large, P1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl871,289,535 - 71,290,872 (-)EnsemblGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)Ensemblrn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera861,813,792 - 61,815,125 (-)NCBICelera
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (EXP)
aconitine  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyhalothrin  (EXP)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
disulfiram  (ISO)
diuron  (EXP)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nimesulide  (EXP)
nitric oxide  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
rac-lactic acid  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Thyrotropin stimulates the expression of an acidic ribosomal protein, P0, messenger ribonucleic acid in cultured rat thyroid (FRTL) cells. Ikeda M, etal., Endocrinology. 1991 May;128(5):2540-7.
5. The primary structure of the acidic phosphoprotein P2 from rat liver 60 S ribosomal subunits. Comparison with ribosomal 'A' proteins from other species. Lin A, etal., J Biol Chem. 1982 Aug 10;257(15):9189-97.
6. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. A specific role for the phosphorylation of mammalian acidic ribosomal protein P2. Vard C, etal., J Biol Chem. 1997 Aug 8;272(32):20259-62.
12. The primary structure of rat ribosomal proteins P0, P1, and P2 and a proposal for a uniform nomenclature for mammalian and yeast ribosomal proteins. Wool IG, etal., Biochimie 1991 Jul-Aug;73(7-8):861-70.
Additional References at PubMed
PMID:3323886   PMID:12477932   PMID:12962325   PMID:15489334   PMID:21423176   PMID:23106098   PMID:23376485   PMID:24625528   PMID:24959908   PMID:25002582   PMID:35352799  


Genomics

Comparative Map Data
Rplp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl871,289,535 - 71,290,872 (-)EnsemblGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)Ensemblrn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera861,813,792 - 61,815,125 (-)NCBICelera
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Cytogenetic Map8q24NCBI
RPLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381569,452,818 - 69,456,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1569,452,809 - 69,456,205 (+)Ensemblhg38GRCh38
GRCh371569,745,157 - 69,748,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361567,532,213 - 67,534,938 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341567,532,212 - 67,534,938NCBI
Celera1546,633,950 - 46,636,675 (+)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1546,578,122 - 46,580,847 (+)NCBIHuRef
CHM1_11569,863,129 - 69,865,854 (+)NCBICHM1_1
T2T-CHM13v2.01567,274,899 - 67,278,285 (+)NCBIT2T-CHM13v2.0
Rplp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39961,820,565 - 61,821,792 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl961,820,566 - 61,821,824 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38961,913,283 - 61,914,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl961,913,284 - 61,914,542 (-)Ensemblmm10GRCm38
MGSCv37961,761,090 - 61,762,317 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36961,711,289 - 61,712,516 (-)NCBIMGSCv36mm8
Celera959,135,851 - 59,137,078 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.5NCBI
Rplp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554507,053,378 - 7,055,858 (-)Ensembl
ChiLan1.0NW_0049554507,053,378 - 7,055,858 (-)NCBIChiLan1.0ChiLan1.0
RPLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21658,717,382 - 58,720,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11562,881,235 - 62,884,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01548,403,415 - 48,406,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11567,173,833 - 67,176,570 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1567,173,832 - 67,176,570 (+)EnsemblpanPan2panpan1.1
RPLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13033,342,099 - 33,346,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3033,277,907 - 33,280,870 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03033,543,714 - 33,546,678 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3033,491,545 - 33,546,709 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13033,469,120 - 33,472,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03033,530,796 - 33,533,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03033,778,695 - 33,781,669 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rplp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640111,334,702 - 111,336,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647129,182,729 - 29,186,737 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647129,182,772 - 29,184,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,296,094 - 167,298,263 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11167,296,084 - 167,298,264 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,384,984 - 185,387,171 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPLP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12614,002,074 - 14,004,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2614,002,075 - 14,004,474 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048127,478,852 - 127,481,262 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rplp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247814,037,824 - 4,045,248 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247814,042,041 - 4,044,613 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rplp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1856,218,302 - 56,219,656 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rplp1
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:91
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000018820
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
RPLP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,431,994 - 8,432,082 (+)MAPPERmRatBN7.2
mRatBN7.2862,395,183 - 62,395,271 (+)MAPPERmRatBN7.2
Rnor_6.0866,863,319 - 66,863,406NCBIRnor6.0
Rnor_6.0179,234,720 - 9,234,807NCBIRnor6.0
Rnor_5.01711,393,529 - 11,393,616UniSTSRnor5.0
Rnor_5.0866,595,700 - 66,595,787UniSTSRnor5.0
RGSC_v3.4866,047,396 - 66,047,483UniSTSRGSC3.4
RGSC_v3.41714,407,913 - 14,408,000UniSTSRGSC3.4
Celera178,516,311 - 8,516,398UniSTS
Celera861,814,968 - 61,815,055UniSTS
Cytogenetic Map17p14UniSTS
Cytogenetic Map8q24UniSTS
PMC156124P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq31UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018820   ⟹   ENSRNOP00000018820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)Ensembl
RefSeq Acc Id: NM_001007604   ⟹   NP_001007605
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8871,289,539 - 71,290,872 (-)NCBI
mRatBN7.2862,394,008 - 62,395,341 (-)NCBI
Rnor_6.0866,862,143 - 66,863,476 (-)NCBI
Rnor_5.0866,594,524 - 66,595,857 (-)NCBI
RGSC_v3.4866,046,220 - 66,047,553 (-)RGD
Celera861,813,792 - 61,815,125 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007605 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58151 (Get FASTA)   NCBI Sequence Viewer  
  EDL95740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018820.2
  ENSRNOP00000087435.1
  ENSRNOP00000092643.1
  ENSRNOP00000101776
GenBank Protein P19944 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007605   ⟸   NM_001007604
- UniProtKB: P19944 (UniProtKB/Swiss-Prot),   A6J567 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018820   ⟸   ENSRNOT00000018820

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19944-F1-model_v2 AlphaFold P19944 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696048
Promoter ID:EPDNEW_R6573
Type:multiple initiation site
Name:LOC100360522_1
Description:ribosomal protein P1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0866,863,475 - 66,863,535EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621774 AgrOrtholog
BioCyc Gene G2FUF-30181 BioCyc
Ensembl Genes ENSRNOG00000013874 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000054840 Ensembl, ENTREZGENE
  ENSRNOG00000063015 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018820.6 UniProtKB/Swiss-Prot
  ENSRNOT00000077213 ENTREZGENE
  ENSRNOT00000107660.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111700.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.1410 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888011 IMAGE-MGC_LOAD
InterPro P1/P2_N_sf UniProtKB/Swiss-Prot
  Ribosomal_L12 UniProtKB/Swiss-Prot
KEGG Report rno:140661 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72935 IMAGE-MGC_LOAD
NCBI Gene 140661 ENTREZGENE
PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 UniProtKB/Swiss-Prot
  LARGE RIBOSOMAL SUBUNIT PROTEIN P1 UniProtKB/Swiss-Prot
Pfam Ribosomal_60s UniProtKB/Swiss-Prot
PhenoGen Rplp1 PhenoGen
RatGTEx ENSRNOG00000013874 RatGTEx
  ENSRNOG00000054840 RatGTEx
  ENSRNOG00000063015 RatGTEx
UniProt A6J567 ENTREZGENE, UniProtKB/TrEMBL
  P19944 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Rplp1  ribosomal protein lateral stalk subunit P1  Rplp1  ribosomal protein, large, P1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to provisional 70820 PROVISIONAL