Ncdn (neurochondrin) - Rat Genome Database

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Gene: Ncdn (neurochondrin) Rattus norvegicus
Analyze
Symbol: Ncdn
Name: neurochondrin
RGD ID: 621734
Description: Involved in neuron projection development and regulation of neuronal synaptic plasticity. Located in several cellular components, including dendrite; endosome membrane; and perikaryon. Orthologous to human NCDN (neurochondrin); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93259; Ncdn-pending; neurite outgrowth-related protein from the rat brain; Norbin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,322,287 - 144,332,117 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5144,322,287 - 144,332,047 (-)EnsemblGRCr8
mRatBN7.25139,037,807 - 139,047,645 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5139,037,819 - 139,047,568 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5141,733,943 - 141,743,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,503,919 - 143,513,675 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,504,738 - 143,514,494 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,769,452 - 144,779,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,769,452 - 144,779,212 (-)Ensemblrn6Rnor6.0
Rnor_5.05148,539,983 - 148,549,802 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45146,157,063 - 146,166,823 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5137,532,649 - 137,542,413 (-)NCBICelera
RGSC_v3.15146,167,113 - 146,176,809 (-)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon  (IDA)
cytosol  (IDA,IEA,ISO)
dendrite  (IBA,IDA,IEA)
endosome membrane  (IDA,IEA)
glutamatergic synapse  (IEA,ISO)
membrane  (IEA,ISO)
neuron projection  (IEA,ISO)
neuronal cell body  (IDA)
nucleus  (IDA)
perikaryon  (IDA)
postsynapse  (IDA,IEA,ISO)

Molecular Function
protein binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Alterations of mGluR5 and its endogenous regulators Norbin, Tamalin and Preso1 in schizophrenia: towards a model of mGluR5 dysregulation. Matosin N, etal., Acta Neuropathol. 2015 Jul;130(1):119-29. doi: 10.1007/s00401-015-1411-6. Epub 2015 Mar 17.
3. Metabotropic glutamate receptor 5, and its trafficking molecules Norbin and Tamalin, are increased in the CA1 hippocampal region of subjects with schizophrenia. Matosin N, etal., Schizophr Res. 2015 Aug;166(1-3):212-8. doi: 10.1016/j.schres.2015.05.001. Epub 2015 Jun 2.id: 97053792 Error occurred: The following PMID is not available: 97053792
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes. Oku S, etal., J Biol Chem. 2013 Jul 5;288(27):19816-29. doi: 10.1074/jbc.M112.431676. Epub 2013 May 16.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. A novel brain gene, norbin, induced by treatment of tetraethylammonium in rat hippocampal slice and accompanied with neurite-outgrowth in neuro 2a cells. Shinozaki K, etal., Biochem Biophys Res Commun 1997 Nov 26;240(3):766-71.
10. Norbin, a neurite-outgrowth-related protein, is a cytosolic protein localized in the somatodendritic region of neurons and distributed prominently in dendritic outgrowth in Purkinje cells. Shinozaki K, etal., Brain Res Mol Brain Res. 1999 Aug 25;71(2):364-8.
11. Norbin is an endogenous regulator of metabotropic glutamate receptor 5 signaling. Wang H, etal., Science. 2009 Dec 11;326(5959):1554-7. doi: 10.1126/science.1178496.
Additional References at PubMed
PMID:10231559   PMID:12477932   PMID:18572016   PMID:19946888   PMID:22871113   PMID:23086522   PMID:24670218   PMID:29070854   PMID:29476059   PMID:32357304   PMID:37880240  


Genomics

Comparative Map Data
Ncdn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,322,287 - 144,332,117 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5144,322,287 - 144,332,047 (-)EnsemblGRCr8
mRatBN7.25139,037,807 - 139,047,645 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5139,037,819 - 139,047,568 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5141,733,943 - 141,743,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,503,919 - 143,513,675 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,504,738 - 143,514,494 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,769,452 - 144,779,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,769,452 - 144,779,212 (-)Ensemblrn6Rnor6.0
Rnor_5.05148,539,983 - 148,549,802 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45146,157,063 - 146,166,823 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5137,532,649 - 137,542,413 (-)NCBICelera
RGSC_v3.15146,167,113 - 146,176,809 (-)NCBI
Cytogenetic Map5q36NCBI
NCDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38135,557,799 - 35,566,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl135,557,456 - 35,567,274 (+)Ensemblhg38GRCh38
GRCh37136,023,400 - 36,032,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36135,795,980 - 35,804,967 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34135,692,510 - 35,701,466NCBI
Celera134,297,787 - 34,306,774 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,141,832 - 34,150,633 (+)NCBIHuRef
CHM1_1136,139,560 - 36,148,545 (+)NCBICHM1_1
T2T-CHM13v2.0135,420,844 - 35,429,828 (+)NCBIT2T-CHM13v2.0
Ncdn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,637,548 - 126,647,203 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,637,543 - 126,647,231 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384126,743,750 - 126,753,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,743,750 - 126,753,438 (-)Ensemblmm10GRCm38
MGSCv374126,420,994 - 126,430,673 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364126,246,059 - 126,255,663 (-)NCBIMGSCv36mm8
Celera4125,084,534 - 125,094,212 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
Ncdn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545213,649,539 - 13,659,436 (+)Ensembl
ChiLan1.0NW_00495545213,650,016 - 13,659,382 (+)NCBIChiLan1.0ChiLan1.0
NCDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,278,139 - 191,287,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,399,304 - 190,408,328 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,825,694 - 34,834,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,002,890 - 36,011,889 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,002,890 - 36,011,889 (+)EnsemblpanPan2panpan1.1
NCDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,573,936 - 6,583,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,574,614 - 6,583,109 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha156,815,986 - 6,825,247 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0156,709,758 - 6,719,019 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,709,764 - 6,718,916 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,561,752 - 6,571,019 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,630,814 - 6,640,073 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,645,083 - 6,654,344 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ncdn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,285,288 - 52,294,565 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,110,113 - 18,119,341 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,110,143 - 18,119,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,747,892 - 91,756,808 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1691,747,550 - 91,756,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NCDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12097,307,993 - 97,316,945 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2097,307,962 - 97,316,579 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603319,401,598 - 19,410,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncdn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476418,615,910 - 18,624,687 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476418,615,213 - 18,624,585 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ncdn
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1131,546,673 - 31,556,252 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ncdn
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:172
Interacting mature miRNAs:208
Transcripts:ENSRNOT00000016230
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130678987145274255Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016230   ⟹   ENSRNOP00000016229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5144,322,287 - 144,332,047 (-)Ensembl
mRatBN7.2 Ensembl5139,037,819 - 139,047,568 (-)Ensembl
Rnor_6.0 Ensembl5144,769,452 - 144,779,212 (-)Ensembl
RefSeq Acc Id: NM_053543   ⟹   NP_445995
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85144,322,287 - 144,332,047 (-)NCBI
mRatBN7.25139,037,807 - 139,047,569 (-)NCBI
Rnor_6.05144,769,452 - 144,779,212 (-)NCBI
Rnor_5.05148,539,983 - 148,549,802 (-)NCBI
RGSC_v3.45146,157,063 - 146,166,823 (-)RGD
Celera5137,532,649 - 137,542,413 (-)RGD
Sequence:
RefSeq Acc Id: XM_063288515   ⟹   XP_063144585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85144,322,292 - 144,332,117 (-)NCBI
Protein Sequences
Protein RefSeqs NP_445995 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144585 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87000 (Get FASTA)   NCBI Sequence Viewer  
  EDL80466 (Get FASTA)   NCBI Sequence Viewer  
  EDL80467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016229
  ENSRNOP00000016229.4
GenBank Protein O35095 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445995   ⟸   NM_053543
- UniProtKB: Q5PQW2 (UniProtKB/Swiss-Prot),   O35095 (UniProtKB/Swiss-Prot),   A6ISB5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016229   ⟸   ENSRNOT00000016230
RefSeq Acc Id: XP_063144585   ⟸   XM_063288515
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35095-F1-model_v2 AlphaFold O35095 1-729 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694040
Promoter ID:EPDNEW_R4565
Type:initiation region
Name:Ncdn_1
Description:neurochondrin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05144,779,256 - 144,779,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621734 AgrOrtholog
BioCyc Gene G2FUF-39878 BioCyc
Ensembl Genes ENSRNOG00000011751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016230 ENTREZGENE
  ENSRNOT00000016230.5 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7190905 IMAGE-MGC_LOAD
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  Neurochondrin UniProtKB/Swiss-Prot
KEGG Report rno:89791 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93259 IMAGE-MGC_LOAD
NCBI Gene 89791 ENTREZGENE
PANTHER NEUROCHONDRIN UniProtKB/Swiss-Prot
  PTHR13109 UniProtKB/Swiss-Prot
Pfam Neurochondrin UniProtKB/Swiss-Prot
PhenoGen Ncdn PhenoGen
RatGTEx ENSRNOG00000011751 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A6ISB5 ENTREZGENE, UniProtKB/TrEMBL
  NCDN_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5PQW2 ENTREZGENE
UniProt Secondary Q5PQW2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-11 Ncdn  potassium channel, subfamily V, member 1  Ncdn-pending  neurochondrin  Symbol updated to reflect Human and Mouse nomenclature 625702 APPROVED
2002-08-07 Ncdn-pending  neurochondrin      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_mutations_overexpression overexpression induces neurite-outgrowth in Neuro 2a cells 724406
gene_regulation expression induced by treatment of tetraethylammonium in rat hippocampal slice 724406