NCDN (neurochondrin) - Rat Genome Database

Name: NCDN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: NCDN (neurochondrin) Pan paniscus

Analyze

Symbol:

NCDN

Name:

neurochondrin

RGD ID:

11873029

Description:

INVOLVED IN bone resorption (ortholog); regulation of neuronal synaptic plasticity (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); epilepsy (ortholog); FOUND IN axon (ortholog); endosome membrane (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCDN (neurochondrin)	NCBI	Ortholog
Mus musculus (house mouse):	Ncdn (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ncdn (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncdn (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCDN (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncdn (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCDN (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCDN (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncdn (neurochondrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	191,278,139 - 191,287,170 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	190,399,304 - 190,408,328 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	34,825,694 - 34,834,729 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	36,002,890 - 36,011,889 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	36,002,890 - 36,011,889 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebellar ataxia (ISO)

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

epilepsy (ISO)

intellectual disability (ISO)

NEURODEVELOPMENTAL DISORDER WITH INFANTILE EPILEPTIC SPASMS (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone resorption (IEA,ISO)

neuron projection development (IEA)

regulation of neuronal synaptic plasticity (IEA,ISO)

regulation of postsynaptic neurotransmitter receptor internalization (ISO)

Cellular Component

axon (ISO)

cytosol (IEA)

dendrite (IEA)

endosome membrane (ISO)

glutamatergic synapse (ISO)

membrane (IEA)

neuron projection (IEA)

neuronal cell body (ISO)

nucleus (ISO)

perikaryon (ISO)

postsynapse (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

NCDN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	191,278,139 - 191,287,170 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	190,399,304 - 190,408,328 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	34,825,694 - 34,834,729 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	36,002,890 - 36,011,889 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	36,002,890 - 36,011,889 (+)	Ensembl	panpan1.1		panPan2

NCDN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	35,557,799 - 35,566,779 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	35,557,473 - 35,567,274 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	36,023,400 - 36,032,380 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	35,795,980 - 35,804,967 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	35,692,510 - 35,701,466	NCBI
Celera	1	34,297,787 - 34,306,774 (+)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	34,141,832 - 34,150,633 (+)	NCBI		HuRef
CHM1_1	1	36,139,560 - 36,148,545 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	35,420,844 - 35,429,828 (+)	NCBI		T2T-CHM13v2.0

Ncdn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	126,637,548 - 126,647,203 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	126,637,543 - 126,647,231 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	126,743,750 - 126,753,765 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	126,743,750 - 126,753,438 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	126,420,994 - 126,430,673 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	126,246,059 - 126,255,663 (-)	NCBI		MGSCv36	mm8
Celera	4	125,084,534 - 125,094,212 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI

Ncdn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	144,322,287 - 144,332,117 (-)	NCBI		GRCr8
mRatBN7.2	5	139,037,807 - 139,047,645 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	139,037,819 - 139,047,568 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	141,733,943 - 141,743,699 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	143,503,919 - 143,513,675 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	143,504,738 - 143,514,494 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	144,769,452 - 144,779,271 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	144,769,452 - 144,779,212 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	148,539,983 - 148,549,802 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	146,157,063 - 146,166,823 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	146,167,113 - 146,176,809 (-)	NCBI
Celera	5	137,532,649 - 137,542,413 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Ncdn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	13,649,539 - 13,659,436 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	13,650,016 - 13,659,382 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCDN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	6,573,936 - 6,583,168 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	6,574,614 - 6,583,109 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	6,815,986 - 6,825,247 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	6,709,758 - 6,719,019 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	6,709,764 - 6,718,916 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	6,561,752 - 6,571,019 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	6,630,814 - 6,640,073 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	6,645,083 - 6,654,344 (-)	NCBI		UU_Cfam_GSD_1.0

Ncdn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	52,285,288 - 52,294,565 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	18,110,113 - 18,119,341 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	18,110,143 - 18,119,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCDN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	91,747,892 - 91,756,808 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	91,747,550 - 91,756,812 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

NCDN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	97,307,993 - 97,316,945 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	97,307,962 - 97,316,579 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	19,401,598 - 19,410,531 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncdn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	18,615,910 - 18,624,687 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	18,615,213 - 18,624,585 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003812571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008965026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008965027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000057900 ⟹ ENSPPAP00000035015

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	36,002,890 - 36,011,889 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000057902 ⟹ ENSPPAP00000035017

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	36,003,608 - 36,011,889 (+)	Ensembl

RefSeq Acc Id:

XM_003812571 ⟹ XP_003812619

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	191,278,139 - 191,287,170 (-)	NCBI
NHGRI_mPanPan1	1	190,399,304 - 190,408,328 (-)	NCBI
Mhudiblu_PPA_v0	1	34,825,694 - 34,834,729 (+)	NCBI
PanPan1.1	1	36,002,896 - 36,011,889 (+)	NCBI

Sequence:

show sequence

AGCCTGGAGCCAGGAGTGGGCAACGCGGCGTGAGCAGCGGCCCGAGGCTCCCGGAGCATCGCGC
TGGGAGAAGACTTCGCCGCTCGGGGCAGCAGCCTGTTGGGCAAGGCGAGCATCATGGCCTCGGA
TTGCGAGCCAGCTCTGAACCAGGCAGAGGGCCGAAACCCCACCCTGGAGCGCTACCTGGGAGCC
CTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTGACCAAGGCAGTCA
AAGCAGGTGACATAGATGCCAAAACTCGGCGGCGGATCTTCGATGCTGTCGGCTTCACCTTCCC
CAATCGTCTCCTGACCACCAAGGAGGCGCCGGATGGCTGCCCTGACCATGTTCTGCGGGCTTTG
GGTGTGGCCCTGCTGGCCTGCTTCTGCAGTGACCCTGAACTGGCCGCCCATCCCCAAGTCCTGA
ACAAGATTCCCATTCTTAGCACCTTCCTCACAGCCCGGGGGGACCCAGACGATGCTGCCCGCCG
CTCCATGATTGATGACACCTACCAGTGCCTGACGGCTGTAGCAGGCACACCCAGAGGGCCTCGG
CACCTCATTGCTGGTGGCACCGTGTCTGCCCTATGCCAGGCATACCTGGGGCACGGCTATGGCT
TTGACCAGGCCCTGGCACTCCTGGTGGGGCTGCTGGCTGCTGCCGAGACACAGTGCTGGAAGGA
GGCGGAGCCCGACCTGCTGGCCGTGTTGCGGGGCCTCAGTGAGGATTTCCAGAAAGCTGAGGAT
GCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTG
AATGCTACCGGGATCTGCAGGCCGGGCTGGCACGCATCCTGGGAAGCAAGCTGAGCTCCTGGCA
GCGCAACCCTGCACTGAAGCTGGCAGCCCGCCTGGCACACGCCTGCGGCTCCGACTGGATCCCG
GCGGGCAGCTCCGGGAGCAAGTTCCTGGCCCTGCTGGTGAATCTGGCGTGCGTGGAAGTGCGGC
TGGCACTGGAGGAGACGGGCACGGAGGTGAAAGAGGATGTGGTGACCGCCTGCTATGCCCTCAT
GGAGTTGGGGATCCAGGAATGCACTCGCTGTGAGCAGTCACTGCTTAAGGAGCCACAGAAGGTG
CAGCTCGTGAGCGTCATGAAGGAGGCCATAGGGGCTGTTATCCACTACCTGCTGCAGGTGGGGT
CAGAGAAGCAGAAGGAGCCCTTTGTGTTTGCCTCGGTGCGGATCCTGGGTGCCTGGCTGGCCGA
GGAGACCTCATCCTTGCGTAAGGAGGTGTGCCAGCTGCTGCCCTTCCTCGTCCGCTATGCCAAG
ACCCTCTACGAGGAGGCCGAGGAGGCCAATGACCTTTCCCAGCAGGTGGCCAACCTGGCCATCT
CCCCCACCACCCCAGGGCCCACCTGGCCAGGAGACGCTCTCCGGCTCCTCCTGCCTGGCTGGTG
CCACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTG
TGCAAGTATTTCCTGCAGCAGTGGGAACTCACATCCCCTGGCCACGACACCTCGGTGCTGCCTG
ACAGCGTGGAGATTGGCCTGCAGACCTGCTGCCACATCTTCCTCAACCTCGTGGTCACCGCACC
GGGGCTGATCAAGCGTGACGCCTGCTTCACATCTCTTATGAACACCCTCATGACGTCGCTACCA
GCACTAGTGCAGCAACAGGGAAGGCTGCTTCTGGCTGCTAATGTGGCCACCCTGGGGCTCCTCA
TGGCCCGGCTCCTTAGCACCTCTCCAGCTCTTCAGGGAACACCAGCATCCCGAGGGTTCTTCGC
AGCTGCCATCCTCTTCCTATCGCAGTCCCACGTGGCGCGGGCCACCCCGGGCTCAGACCAGGCA
GTGCTAGCCCTGTCCCCTGAGTATGAGGGCATCTGGGCCGACCTGCAGGAGCTCTGGTTCCTGG
GCATGCAGGCCTTCACCGGCTGTGTGCCTCTGCTGCCCTGGCTGGCCCCCGCTGCCCTGCGCTC
CCGCTGGCCGCAGGAGCTGCTCCAGCTGCTAGGTAGTGTCAGCCCCAACTCTGTCAAGCCCGAG
ATGGTGGCCGCCTATCAGGGTGTCCTGGTGGAGTTGGCGCGGGCCAACCGGCTGTGCCGGGAGG
CCATGAGGCTGCAGGCGGGTGAGGAGACGGCCAGCCACTACCGCATGGCTGCCTTGGAGCAGTG
CCTGTCAGAGCCCTGAGGGGTGTCCACCGGGGACAGACCCAGGGGCGGGCAGAGAGGGAAGGAG
GGAGGAGGCATCTTCCCTAAAGCCCCCAAACTGGCCCCCCCCTCCCCAGACTTCCTCCCCAAAA
CACCCCAGCTTTCTGGCTTTTCTGAGGGCAAGGGCATGGTGCCCACCCCTCAAGTGTAAGGAAC
TGCGTTCCGCCCCTCAGGCCCCCATGGGGGCAGGGATCGGCTTGGAAATCAACGTGGTTGTCCC
CGCCAGGCCGGGGAAGGTTGGAGCAGCCCCCAGGGAGGGGGGCACTAGGTGTCATTGTGCCCGA
TGTCTGGCTCCCCTGCAGGAGGGAGGCTCCAGGGTAAGACAGGGCTGGCAGGAGCAGACTGCCT
CAGCCCATGTGCCCTGCCGGCCAGGGCGTGGGCTCCCCTCGGCTGTGGTGCCTCCTCTGGCCCC
CCAGGTCCACGTCCTTTAAATTGGCCCTTTGGCTCTTGCCCTTGGCTCCCTTGGGCAGACAGCA
GGCTTAGGCCATTGATATCGCAGTTCTTCCTATCAGCTTCAGTGACCCAGGGTCTGAACTGCCC
CCATCCTAGGGCAACCTGGGGCAGACAGGCCTGGTGGGGGGTGGGGAAACCTCCTTCCACCTGA
GCTTGCTTGAAGGGACCCAGGAGTCTCTGGGCCCAGATCCTTAAACCTTTGTGTCGTGTTGCAG
CAGAGTGACGATGGGGGTTGGGGGGGTTATTTATTTTGCCTGTCCTTATCCCTGCTTGGACACC
TGAGCATCTGATTCCTGTCCCCCTGGTGCCATCTGGCCTGGCTGGAGCCAGGAACAGGAGGGAC
ACTTCCCCAGAATCCGCATGTTTCCCCAGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTT
TAACTCCCACCCCTGCTATGACTCCTCTCTGCAGAGACGCGACTGGCGGCTCCAGCAGGGACTA
CCTTTCTTGTAAACCCAGGGGGACCACACACACACACACACACACACACACACACACACACACA
CACACACACTCTTGATCCCTTGCTTCCCTCCCCCAGTGCGTTCTGTGATCGCCAAGTTCAAAGC
TGTGCACATGTGGACACTCAATAAATGTTCATTGGTGACGAGAA

hide sequence

RefSeq Acc Id:

XM_008965026 ⟹ XP_008963274

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	191,278,139 - 191,287,166 (-)	NCBI
NHGRI_mPanPan1	1	190,399,304 - 190,408,324 (-)	NCBI
Mhudiblu_PPA_v0	1	34,825,717 - 34,834,729 (+)	NCBI
PanPan1.1	1	36,002,890 - 36,011,889 (+)	NCBI

Sequence:

show sequence

TGCAGCAGCCTGGAGCCAGGAGTGGGCAACGCGGCGTGAGCAGCGGCCCGAGGCTCCCGGAGCA
TCGCGCTGGGAGAAGACTTCGCCGCTCGGGGCAGCAGCCTGTGTGATCTCATCGCCGCCCTGTC
GTGACTTCATCAATGTCGTGTTGTGACCTGGCTGCGGCGGGACAGTTGGGCAAGGCGAGCATCA
TGGCCTCGGATTGCGAGCCAGCTCTGAACCAGGCAGAGGGCCGAAACCCCACCCTGGAGCGCTA
CCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTGACC
AAGGCAGTCAAAGCAGGTGACATAGATGCCAAAACTCGGCGGCGGATCTTCGATGCTGTCGGCT
TCACCTTCCCCAATCGTCTCCTGACCACCAAGGAGGCGCCGGATGGCTGCCCTGACCATGTTCT
GCGGGCTTTGGGTGTGGCCCTGCTGGCCTGCTTCTGCAGTGACCCTGAACTGGCCGCCCATCCC
CAAGTCCTGAACAAGATTCCCATTCTTAGCACCTTCCTCACAGCCCGGGGGGACCCAGACGATG
CTGCCCGCCGCTCCATGATTGATGACACCTACCAGTGCCTGACGGCTGTAGCAGGCACACCCAG
AGGGCCTCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTATGCCAGGCATACCTGGGGCAC
GGCTATGGCTTTGACCAGGCCCTGGCACTCCTGGTGGGGCTGCTGGCTGCTGCCGAGACACAGT
GCTGGAAGGAGGCGGAGCCCGACCTGCTGGCCGTGTTGCGGGGCCTCAGTGAGGATTTCCAGAA
AGCTGAGGATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTCTTTTTGCCCCCGACAACC
GTGCCCCCTGAATGCTACCGGGATCTGCAGGCCGGGCTGGCACGCATCCTGGGAAGCAAGCTGA
GCTCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCCCGCCTGGCACACGCCTGCGGCTCCGA
CTGGATCCCGGCGGGCAGCTCCGGGAGCAAGTTCCTGGCCCTGCTGGTGAATCTGGCGTGCGTG
GAAGTGCGGCTGGCACTGGAGGAGACGGGCACGGAGGTGAAAGAGGATGTGGTGACCGCCTGCT
ATGCCCTCATGGAGTTGGGGATCCAGGAATGCACTCGCTGTGAGCAGTCACTGCTTAAGGAGCC
ACAGAAGGTGCAGCTCGTGAGCGTCATGAAGGAGGCCATAGGGGCTGTTATCCACTACCTGCTG
CAGGTGGGGTCAGAGAAGCAGAAGGAGCCCTTTGTGTTTGCCTCGGTGCGGATCCTGGGTGCCT
GGCTGGCCGAGGAGACCTCATCCTTGCGTAAGGAGGTGTGCCAGCTGCTGCCCTTCCTCGTCCG
CTATGCCAAGACCCTCTACGAGGAGGCCGAGGAGGCCAATGACCTTTCCCAGCAGGTGGCCAAC
CTGGCCATCTCCCCCACCACCCCAGGGCCCACCTGGCCAGGAGACGCTCTCCGGCTCCTCCTGC
CTGGCTGGTGCCACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGAAGGGGCCCC
CTCGCTTCTGTGCAAGTATTTCCTGCAGCAGTGGGAACTCACATCCCCTGGCCACGACACCTCG
GTGCTGCCTGACAGCGTGGAGATTGGCCTGCAGACCTGCTGCCACATCTTCCTCAACCTCGTGG
TCACCGCACCGGGGCTGATCAAGCGTGACGCCTGCTTCACATCTCTTATGAACACCCTCATGAC
GTCGCTACCAGCACTAGTGCAGCAACAGGGAAGGCTGCTTCTGGCTGCTAATGTGGCCACCCTG
GGGCTCCTCATGGCCCGGCTCCTTAGCACCTCTCCAGCTCTTCAGGGAACACCAGCATCCCGAG
GGTTCTTCGCAGCTGCCATCCTCTTCCTATCGCAGTCCCACGTGGCGCGGGCCACCCCGGGCTC
AGACCAGGCAGTGCTAGCCCTGTCCCCTGAGTATGAGGGCATCTGGGCCGACCTGCAGGAGCTC
TGGTTCCTGGGCATGCAGGCCTTCACCGGCTGTGTGCCTCTGCTGCCCTGGCTGGCCCCCGCTG
CCCTGCGCTCCCGCTGGCCGCAGGAGCTGCTCCAGCTGCTAGGTAGTGTCAGCCCCAACTCTGT
CAAGCCCGAGATGGTGGCCGCCTATCAGGGTGTCCTGGTGGAGTTGGCGCGGGCCAACCGGCTG
TGCCGGGAGGCCATGAGGCTGCAGGCGGGTGAGGAGACGGCCAGCCACTACCGCATGGCTGCCT
TGGAGCAGTGCCTGTCAGAGCCCTGAGGGGTGTCCACCGGGGACAGACCCAGGGGCGGGCAGAG
AGGGAAGGAGGGAGGAGGCATCTTCCCTAAAGCCCCCAAACTGGCCCCCCCCTCCCCAGACTTC
CTCCCCAAAACACCCCAGCTTTCTGGCTTTTCTGAGGGCAAGGGCATGGTGCCCACCCCTCAAG
TGTAAGGAACTGCGTTCCGCCCCTCAGGCCCCCATGGGGGCAGGGATCGGCTTGGAAATCAACG
TGGTTGTCCCCGCCAGGCCGGGGAAGGTTGGAGCAGCCCCCAGGGAGGGGGGCACTAGGTGTCA
TTGTGCCCGATGTCTGGCTCCCCTGCAGGAGGGAGGCTCCAGGGTAAGACAGGGCTGGCAGGAG
CAGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGGGCTCCCCTCGGCTGTGGTGCCTC
CTCTGGCCCCCCAGGTCCACGTCCTTTAAATTGGCCCTTTGGCTCTTGCCCTTGGCTCCCTTGG
GCAGACAGCAGGCTTAGGCCATTGATATCGCAGTTCTTCCTATCAGCTTCAGTGACCCAGGGTC
TGAACTGCCCCCATCCTAGGGCAACCTGGGGCAGACAGGCCTGGTGGGGGGTGGGGAAACCTCC
TTCCACCTGAGCTTGCTTGAAGGGACCCAGGAGTCTCTGGGCCCAGATCCTTAAACCTTTGTGT
CGTGTTGCAGCAGAGTGACGATGGGGGTTGGGGGGGTTATTTATTTTGCCTGTCCTTATCCCTG
CTTGGACACCTGAGCATCTGATTCCTGTCCCCCTGGTGCCATCTGGCCTGGCTGGAGCCAGGAA
CAGGAGGGACACTTCCCCAGAATCCGCATGTTTCCCCAGTGATTGCACTCCACTGCCACCGTGG
TGCCTGGCTTTAACTCCCACCCCTGCTATGACTCCTCTCTGCAGAGACGCGACTGGCGGCTCCA
GCAGGGACTACCTTTCTTGTAAACCCAGGGGGACCACACACACACACACACACACACACACACA
CACACACACACACACACACTCTTGATCCCTTGCTTCCCTCCCCCAGTGCGTTCTGTGATCGCCA
AGTTCAAAGCTGTGCACATGTGGACACTCAATAAATGTTCATTGGTGACGAGAA

hide sequence

RefSeq Acc Id:

XM_008965027 ⟹ XP_008963275

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	191,278,139 - 191,287,144 (-)	NCBI
NHGRI_mPanPan1	1	190,399,304 - 190,408,302 (-)	NCBI
Mhudiblu_PPA_v0	1	34,825,718 - 34,833,719 (+)	NCBI
PanPan1.1	1	36,002,906 - 36,011,889 (+)	NCBI

Sequence:

show sequence

CAGGAGTGGGCAACGCGGCGTGAGCAGCGGCCCGAGGCTCCCGGAGCATCGCGCTGGGAGAAGA
CTTCGCCGCTCGGGGCAGCAGCCTGAGGGATGCTCAGTCCCTCTTGTGTTCACAGTTGGGCAAG
GCGAGCATCATGGCCTCGGATTGCGAGCCAGCTCTGAACCAGGCAGAGGGCCGAAACCCCACCC
TGGAGCGCTACCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCT
GCTAGTGACCAAGGCAGTCAAAGCAGGTGACATAGATGCCAAAACTCGGCGGCGGATCTTCGAT
GCTGTCGGCTTCACCTTCCCCAATCGTCTCCTGACCACCAAGGAGGCGCCGGATGGCTGCCCTG
ACCATGTTCTGCGGGCTTTGGGTGTGGCCCTGCTGGCCTGCTTCTGCAGTGACCCTGAACTGGC
CGCCCATCCCCAAGTCCTGAACAAGATTCCCATTCTTAGCACCTTCCTCACAGCCCGGGGGGAC
CCAGACGATGCTGCCCGCCGCTCCATGATTGATGACACCTACCAGTGCCTGACGGCTGTAGCAG
GCACACCCAGAGGGCCTCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTATGCCAGGCATA
CCTGGGGCACGGCTATGGCTTTGACCAGGCCCTGGCACTCCTGGTGGGGCTGCTGGCTGCTGCC
GAGACACAGTGCTGGAAGGAGGCGGAGCCCGACCTGCTGGCCGTGTTGCGGGGCCTCAGTGAGG
ATTTCCAGAAAGCTGAGGATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTCTTTTTGCC
CCCGACAACCGTGCCCCCTGAATGCTACCGGGATCTGCAGGCCGGGCTGGCACGCATCCTGGGA
AGCAAGCTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCCCGCCTGGCACACGCCT
GCGGCTCCGACTGGATCCCGGCGGGCAGCTCCGGGAGCAAGTTCCTGGCCCTGCTGGTGAATCT
GGCGTGCGTGGAAGTGCGGCTGGCACTGGAGGAGACGGGCACGGAGGTGAAAGAGGATGTGGTG
ACCGCCTGCTATGCCCTCATGGAGTTGGGGATCCAGGAATGCACTCGCTGTGAGCAGTCACTGC
TTAAGGAGCCACAGAAGGTGCAGCTCGTGAGCGTCATGAAGGAGGCCATAGGGGCTGTTATCCA
CTACCTGCTGCAGGTGGGGTCAGAGAAGCAGAAGGAGCCCTTTGTGTTTGCCTCGGTGCGGATC
CTGGGTGCCTGGCTGGCCGAGGAGACCTCATCCTTGCGTAAGGAGGTGTGCCAGCTGCTGCCCT
TCCTCGTCCGCTATGCCAAGACCCTCTACGAGGAGGCCGAGGAGGCCAATGACCTTTCCCAGCA
GGTGGCCAACCTGGCCATCTCCCCCACCACCCCAGGGCCCACCTGGCCAGGAGACGCTCTCCGG
CTCCTCCTGCCTGGCTGGTGCCACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG
AAGGGGCCCCCTCGCTTCTGTGCAAGTATTTCCTGCAGCAGTGGGAACTCACATCCCCTGGCCA
CGACACCTCGGTGCTGCCTGACAGCGTGGAGATTGGCCTGCAGACCTGCTGCCACATCTTCCTC
AACCTCGTGGTCACCGCACCGGGGCTGATCAAGCGTGACGCCTGCTTCACATCTCTTATGAACA
CCCTCATGACGTCGCTACCAGCACTAGTGCAGCAACAGGGAAGGCTGCTTCTGGCTGCTAATGT
GGCCACCCTGGGGCTCCTCATGGCCCGGCTCCTTAGCACCTCTCCAGCTCTTCAGGGAACACCA
GCATCCCGAGGGTTCTTCGCAGCTGCCATCCTCTTCCTATCGCAGTCCCACGTGGCGCGGGCCA
CCCCGGGCTCAGACCAGGCAGTGCTAGCCCTGTCCCCTGAGTATGAGGGCATCTGGGCCGACCT
GCAGGAGCTCTGGTTCCTGGGCATGCAGGCCTTCACCGGCTGTGTGCCTCTGCTGCCCTGGCTG
GCCCCCGCTGCCCTGCGCTCCCGCTGGCCGCAGGAGCTGCTCCAGCTGCTAGGTAGTGTCAGCC
CCAACTCTGTCAAGCCCGAGATGGTGGCCGCCTATCAGGGTGTCCTGGTGGAGTTGGCGCGGGC
CAACCGGCTGTGCCGGGAGGCCATGAGGCTGCAGGCGGGTGAGGAGACGGCCAGCCACTACCGC
ATGGCTGCCTTGGAGCAGTGCCTGTCAGAGCCCTGAGGGGTGTCCACCGGGGACAGACCCAGGG
GCGGGCAGAGAGGGAAGGAGGGAGGAGGCATCTTCCCTAAAGCCCCCAAACTGGCCCCCCCCTC
CCCAGACTTCCTCCCCAAAACACCCCAGCTTTCTGGCTTTTCTGAGGGCAAGGGCATGGTGCCC
ACCCCTCAAGTGTAAGGAACTGCGTTCCGCCCCTCAGGCCCCCATGGGGGCAGGGATCGGCTTG
GAAATCAACGTGGTTGTCCCCGCCAGGCCGGGGAAGGTTGGAGCAGCCCCCAGGGAGGGGGGCA
CTAGGTGTCATTGTGCCCGATGTCTGGCTCCCCTGCAGGAGGGAGGCTCCAGGGTAAGACAGGG
CTGGCAGGAGCAGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGGGCTCCCCTCGGCT
GTGGTGCCTCCTCTGGCCCCCCAGGTCCACGTCCTTTAAATTGGCCCTTTGGCTCTTGCCCTTG
GCTCCCTTGGGCAGACAGCAGGCTTAGGCCATTGATATCGCAGTTCTTCCTATCAGCTTCAGTG
ACCCAGGGTCTGAACTGCCCCCATCCTAGGGCAACCTGGGGCAGACAGGCCTGGTGGGGGGTGG
GGAAACCTCCTTCCACCTGAGCTTGCTTGAAGGGACCCAGGAGTCTCTGGGCCCAGATCCTTAA
ACCTTTGTGTCGTGTTGCAGCAGAGTGACGATGGGGGTTGGGGGGGTTATTTATTTTGCCTGTC
CTTATCCCTGCTTGGACACCTGAGCATCTGATTCCTGTCCCCCTGGTGCCATCTGGCCTGGCTG
GAGCCAGGAACAGGAGGGACACTTCCCCAGAATCCGCATGTTTCCCCAGTGATTGCACTCCACT
GCCACCGTGGTGCCTGGCTTTAACTCCCACCCCTGCTATGACTCCTCTCTGCAGAGACGCGACT
GGCGGCTCCAGCAGGGACTACCTTTCTTGTAAACCCAGGGGGACCACACACACACACACACACA
CACACACACACACACACACACACACACACTCTTGATCCCTTGCTTCCCTCCCCCAGTGCGTTCT
GTGATCGCCAAGTTCAAAGCTGTGCACATGTGGACACTCAATAAATGTTCATTGGTGACGAGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003812619	(Get FASTA)	NCBI Sequence Viewer
	XP_008963274	(Get FASTA)	NCBI Sequence Viewer
	XP_008963275	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000035015
	ENSPPAP00000035015.1
	ENSPPAP00000035017.1

RefSeq Acc Id:	XP_008963274 ⟸ XM_008965026
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9C2I7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVK AGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLN KIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGF DQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPE CYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRL ALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGS EKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAIS PTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPD SVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLM ARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLG MQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREA MRLQAGEETASHYRMAALEQCLSEP hide sequence

RefSeq Acc Id:	XP_003812619 ⟸ XM_003812571
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZC2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG FTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGDPDD AARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQ CWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILGSKL SSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTAC YALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGA WLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL PGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLV VTAPGLIKRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASR GFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPA ALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAA LEQCLSEP hide sequence

RefSeq Acc Id:	XP_008963275 ⟸ XM_008965027
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BZC2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG FTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGDPDD AARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQ CWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILGSKL SSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTAC YALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGA WLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL PGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLV VTAPGLIKRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASR GFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPA ALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAA LEQCLSEP hide sequence

RefSeq Acc Id:

ENSPPAP00000035015 ⟸ ENSPPAT00000057900

RefSeq Acc Id:

ENSPPAP00000035017 ⟸ ENSPPAT00000057902

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040334	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000057900.1	UniProtKB/TrEMBL
	ENSPPAT00000057902.1	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Neurochondrin	UniProtKB/TrEMBL
KEGG Report	pps:100994707	UniProtKB/TrEMBL
NCBI Gene	NCDN	ENTREZGENE
PANTHER	NEUROCHONDRIN	UniProtKB/TrEMBL
	PTHR13109	UniProtKB/TrEMBL
Pfam	Neurochondrin	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A2R9BZC2	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C2I7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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