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Gene: Ptbp3 (polypyrimidine tract binding protein 3) Rattus norvegicus

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Symbol:

Ptbp3

Name:

polypyrimidine tract binding protein 3

RGD ID:

621671

Description:

Predicted to enable mRNA binding activity. Involved in regulation of cell differentiation. Predicted to be active in nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3); INTERACTS WITH 1,2-dimethylhydrazine; 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

polypyrimidine tract-binding protein 3; regulator of differentiation (in S. pombe) 1; regulator of differentiation 1; Rod1; ROD1 regulator of differentiation 1; ROD1 regulator of differentiation 1 (S. pombe)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PTBP3 (polypyrimidine tract binding protein 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ptbp3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ptbp3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PTBP3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PTBP3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ptbp3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PTBP3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PTBP3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ptbp3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ptbp3 (polypyrimidine tract binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PTBP3 (polypyrimidine tract binding protein 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ptbp3 (polypyrimidine tract binding protein 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ptbp3 (polypyrimidine tract binding protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ptb-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ptb-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	heph	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	heph	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ptbp3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ptbp3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	79,108,376 - 79,194,533 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	79,108,376 - 79,194,508 (-)	Ensembl				GRCr8
mRatBN7.2	5	74,313,367 - 74,399,439 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	74,315,101 - 74,399,791 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	76,218,248 - 76,304,318 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	78,039,883 - 78,125,953 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	78,012,048 - 78,098,119 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	76,670,074 - 76,756,196 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	76,673,990 - 76,756,147 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	80,807,961 - 80,893,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	77,551,329 - 77,635,122 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	73,136,368 - 73,217,909 (-)	NCBI		Celera
RGSC_v3.1	5	77,556,441 - 77,640,235 (-)	NCBI
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (EXP,ISO)

1,3,5-trinitro-1,3,5-triazinane (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4,6-tribromophenol (ISO)

3',5'-cyclic UMP (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

alpha-phellandrene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

diallyl trisulfide (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

diuron (EXP)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

geldanamycin (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead diacetate (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

rimonabant (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

troglitazone (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

erythrocyte maturation (IEA)

mRNA processing (IEA)

negative regulation of mRNA splicing, via spliceosome (ISO)

negative regulation of RNA splicing (ISO)

regulation of cell differentiation (IMP)

regulation of RNA splicing (IBA)

RNA splicing (IEA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

mRNA binding (IBA)

nucleic acid binding (IEA)

RNA binding (IEA,NAS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Isolation of a mammalian homologue of a fission yeast differentiation regulator.	Yamamoto H, etal., Mol Cell Biol 1999 May;19(5):3829-41.

Additional References at PubMed

PMID:18335065	PMID:22658674	PMID:22681889	PMID:23636947

Genomics

Comparative Map Data

Ptbp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	79,108,376 - 79,194,533 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	79,108,376 - 79,194,508 (-)	Ensembl				GRCr8
mRatBN7.2	5	74,313,367 - 74,399,439 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	74,315,101 - 74,399,791 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	76,218,248 - 76,304,318 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	78,039,883 - 78,125,953 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	78,012,048 - 78,098,119 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	76,670,074 - 76,756,196 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	76,673,990 - 76,756,147 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	80,807,961 - 80,893,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	77,551,329 - 77,635,122 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	73,136,368 - 73,217,909 (-)	NCBI		Celera
RGSC_v3.1	5	77,556,441 - 77,640,235 (-)	NCBI
Cytogenetic Map	5	q24	NCBI

PTBP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	112,217,715 - 112,379,882 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	112,215,071 - 112,333,695 (-)	Ensembl			hg38	GRCh38
GRCh37	9	114,979,995 - 115,095,944 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	114,020,536 - 114,135,733 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	112,064,495 - 112,175,460	NCBI
Celera	9	85,479,714 - 85,594,900 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	84,578,801 - 84,694,587 (-)	NCBI		HuRef
CHM1_1	9	115,126,396 - 115,242,542 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	124,388,866 - 124,504,825 (-)	NCBI		T2T-CHM13v2.0

Ptbp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	59,471,868 - 59,549,288 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	59,471,868 - 59,549,364 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	59,471,868 - 59,549,378 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	59,471,868 - 59,549,364 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	59,484,740 - 59,562,236 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	59,569,120 - 59,643,340 (-)	NCBI		MGSCv36	mm8
Celera	4	59,388,969 - 59,466,480 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	32.57	NCBI

Ptbp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	15,000,072 - 15,101,588 (+)	Ensembl
ChiLan1.0	NW_004955419	15,002,780 - 15,101,588 (+)	NCBI	ChiLan1.0	ChiLan1.0

PTBP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	27,053,960 - 27,213,681 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	27,056,557 - 27,216,931 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	83,348,909 - 83,508,736 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	111,506,100 - 111,664,928 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	111,511,371 - 111,563,893 (-)	Ensembl			panPan2	panpan1.1

PTBP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	66,727,670 - 66,847,755 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	66,732,583 - 66,847,303 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	65,136,112 - 65,291,068 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	67,861,465 - 68,012,011 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	67,861,472 - 67,980,571 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	66,375,784 - 66,528,469 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	66,399,432 - 66,551,921 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	67,143,518 - 67,296,220 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ptbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	182,076,874 - 182,174,968 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	1,091,494 - 1,186,440 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	1,091,575 - 1,186,452 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTBP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	252,986,564 - 253,093,063 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	252,986,716 - 253,093,059 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	283,772,669 - 283,878,514 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PTBP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	27,179,727 - 27,295,046 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	27,179,747 - 27,289,764 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666035	15,489,829 - 15,605,815 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptbp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	22,632,048 - 22,747,156 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	22,632,125 - 22,751,823 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptbp3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	91,886,503 - 91,967,503 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ptbp3
572 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	368
Count of miRNA genes:	218
Interacting mature miRNAs:	244
Transcripts:	ENSRNOT00000022107
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	73779642	118779642	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	73779642	103472210	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
7394708	Emca11	Estrogen-induced mammary cancer QTL 11			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	73176602	118176602	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	69474415	114474415	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	69835120	114835120	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	73779642	118779642	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	172	91	90	59	92	59	6	358	192	11	151	83	93	31	23	23

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB023966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022107 ⟹ ENSRNOP00000022107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	79,108,376 - 79,194,437 (-)	Ensembl
mRatBN7.2 Ensembl	5	74,315,101 - 74,399,791 (-)	Ensembl
Rnor_6.0 Ensembl	5	76,673,990 - 76,756,140 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089251 ⟹ ENSRNOP00000069354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	79,108,376 - 79,194,508 (-)	Ensembl
mRatBN7.2 Ensembl	5	74,315,101 - 74,372,181 (-)	Ensembl
Rnor_6.0 Ensembl	5	76,674,886 - 76,756,147 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116337 ⟹ ENSRNOP00000092713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	79,108,376 - 79,194,387 (-)	Ensembl
mRatBN7.2 Ensembl	5	74,315,101 - 74,399,791 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118205 ⟹ ENSRNOP00000084394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	74,360,980 - 74,398,690 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136659 ⟹ ENSRNOP00000098748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	79,108,376 - 79,193,982 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157596 ⟹ ENSRNOP00000104044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	79,108,376 - 79,194,437 (-)	Ensembl

RefSeq Acc Id:

NM_031346 ⟹ NP_112636

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,108,376 - 79,194,440 (-)	NCBI
mRatBN7.2	5	74,313,367 - 74,399,438 (-)	NCBI
Rnor_6.0	5	76,673,990 - 76,756,140 (-)	NCBI
Rnor_5.0	5	80,807,961 - 80,893,974 (-)	NCBI
RGSC_v3.4	5	77,551,329 - 77,635,122 (-)	RGD
Celera	5	73,136,368 - 73,217,909 (-)	RGD

Sequence:

show sequence

GACTCTTCCTTCCACCTCTGACCGGCCGGGCTGCGGAGCGCTCCGCTCGCAGGTCCCGGGAGCC
GCCGCCCGCTTCCTCCGCCCGCGGTGAGCCCGTCAATCCCCGCACAACGCGCTCCTCCATCTGG
GCCATGGATGGCGGGGATCTGATGAGCTTCTTCCTTCTGGTGTCATTAACGGACCTTCTACCAT
GAACAATTCTACTTCTGCAGGTGTGTATGCTAATGGGAATGACAACAAGAAATTTAAAGGAGAT
AGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCATGTGATGTCACCGAAG
CAGAGGTCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGTTGAAAGGAAA
AAGCCAGGCCTTTTTGGAAATGGCTTCTGAAGAAGCTGCTGTTACTATGATAAATTATTACACT
CCCGTTACTCCTCACCTTCGAAGTCAGCCTGTTTATATCCAGTATTCCAATCACCGAGAACTTA
AGACTGACAATCTGCCCAATCAGGCTAGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCAGTCCA
GTCAGGAAACCTGTCCCTTCCTGGAGCTACTTCCAATGAAGGCACATTGCTACCTGGGCAGAGC
CCTGTGCTCCGGATAATTATTGAAAACCTATTTTACCCTGTCACTCTGGAAGTTCTCCATCAGA
TATTTTCTAAATTTGGCACGGTGTTGAAGATTATCACCTTTACAAAGAATAATCAGTTTCAAGC
CTTGCTTCAGTATGCTGACCCAGTGAATGCGCAGTATGCCAAAATGGCTCTGGATGGCCAGAAT
ATCTATAATGCGTGCTGCACTCTCCGTATCGACTTCTCCAAGCTCACCAGCCTTAATGTGAAAT
ACAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACTGGTGATGGTCAGCCATC
TCTTGAACCTCCTATGGCTGCTGCATTCGGTGCACCGGGTATAATGTCCTCTCCATATGCAGGG
GCTGCTGGATTTGCCCCAGCCATTGCATTTCCTCAAGCAGCAGGTCTGTCCGTCTCGGCTGTTC
CTGGAGCCCTTGGTCCTCTCACACTTACTTCCTCTGCTGTCAGTGGAAGGATGGCCATTCCTGG
GGCAAGTGGTATACCAGGGAATTCCGTTCTGCTGGTCACCAACCTCAATCCTGACTTTATCACA
CCACATGGGCTTTTTATCCTATTTGGAGTGTATGGTGATGTACATCGAGTGAAGATTATGTTTA
ACAAGAAAGAAAATGCCTTGGTGCAGATGGCCGATGCGAGTCAAGCCCAGATAGCAATGAACCA
CCTAAGTGGTCAGAGACTTTATGGAAAAGTACTTCGGGCTACACTGTCCAAACATCAAGCTGTC
CAGCTCCCTAGAGAGGGACAAGAAGACCAAGGTCTGACCAAGGACTTCAGCAATAGTCCCCTGC
ATCGCTTTAAAAAGCCTGGCTCAAAGAACTTCCAAAACATCTTCCCTCCGTCAGCCACACTGCA
TCTCTCCAACATTCCTCCTTCTGTTACAATGGATGATCTGAAGAACCTGTTCACGGAAGCTGGA
TGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAGGACCGTAAGATGGCACTCATTCAGTTGGGAT
CTGTGGAGGAAGCAATCCAGGCCCTTATTGAGCTTCACAATCATGACCTTGGAGAAAATCACCA
CCTCAGAGTTTCCTTCTCAAAATCCACCATCTGATCTGTCTGTGAAAATCTCTCCTTGTATTGG
ACCATAATTTCTGTAAATCTTCAGGCACAGACTGAAGCAGTTCAGGACCAGCTCTGCCTCTTCC
ATAAAAGTAACTCTTGGAGTCTGACTGATACTCAAGTACGACAGCTACTCCTTTCCTCTCATTT
CCCCTACCACTGTATGATCAAAAGTTTGCTTTTCCTTTGTATTGTGGTTTCTATGAAAATAACT
TTCAGGAAAAAAAATCAGGAAAGTATATTTTAAATAATTTAATTCCCTGAATTAGATTTCAGAA
GGACAGACTTTCTTTATGTTTGGGTCCAGATCAGCCTTACATGACATTTCTAAACTCCTTTGTA
CTTTGAGAAATTTAAACATACAGCCTTTTGCAATTTCTTGATGTAATTTAAATCACCTTCTACT
AAGTTTTTAACTTTATGATTCAGAAGTTTCCCTGTAGAACGTGACATTCATTCACTTGTAAGAC
TTGTACCAGATGTTTGCACCTATTGATAGCTTATTATACACAACCACACGGAGTTGTATTGGAA
ACAGGTCTATAGACATGCATGCTTCCTTTAGTCTTCTTTCCCCCTCCTGTGTTACACTCCTTTG
AATAATGCATATCTTCTCTTTTTAAGACTATTTGGAAAAGCAAAGTGTTGCAACTGTCCCCAGG
GAAATAGAAGTGAAATTCAGCCTGGATCTATTACAATATCAGCATAATTAGTCATTTTAGAAAA
AAAAAATCATGTTTTAAATTTCAAAATGACATTTGTCTAGTAATGTAATGTGATCTTGGAAAAT
TTTAAAAGAAAATAATCCTACTTTTTTATAATTGTTTTCAGAAAAAAGTTTACAGTCTTAAGGA
AAAATATTCAGGTCTATCATATGGTTTGACAGAGTTTTTAAAAGTTATTTTTGGTAAGGTCTTC
TTTTAGAAAAAAAAATCTCAAGGGTTTTTTGTACCACTATAATCTCTAATACTCAGAATTACTG
TGTACTTACTTAATTTCTTATTATGTGCCTTATTATGTGCTTAAGATATAATAGGTTAGGATTT
TATCTAAATATCTAGGAAGATAAATTGTGGGCTTGGTGAGCAAA

hide sequence

RefSeq Acc Id:

XM_006238206 ⟹ XP_006238268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,108,376 - 79,194,532 (-)	NCBI
mRatBN7.2	5	74,313,536 - 74,399,439 (-)	NCBI
Rnor_6.0	5	76,670,074 - 76,756,196 (-)	NCBI
Rnor_5.0	5	80,807,961 - 80,893,974 (-)	NCBI

Sequence:

show sequence

GGAGGGCGGGGGCGCGGCGCTGGCGAGAGCGTGCCCGGTCCCCGCCCCTGTTTCCCACTCTTCC
TTCCACCTCTGACCGGCCGGGCTGCGGAGCGGCTCCGCTCGCAGGTCCCGGGAGCCGCCGCCCG
CTTCCTCCGCCCGCGGTGAGCCCGTCAATCCCCGCACAACGCGCTCCTCCATCTGGGCCATGGA
TGGTGTTGTTACAGATCTTATAGCAGTCGGTTTAAAGCGGGGATCTGATGAGCTTCTTCCTTCT
GGTGTCATTAACGGACCTTCTACCATGAACAATTCTACTTCTGCAGGTGTGTATGCTAATGGGA
ATGACAACAAGAAATTTAAAGGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCG
AAAAATTCCATGTGATGTCACCGAAGCAGAGGTCATATCATTAGGTCTACCATTTGGCAAAGTA
ACTAATCTTTTGATGTTGAAAGGAAAAAGCCAGGCCTTTTTGGAAATGGCTTCTGAAGAAGCTG
CTGTTACTATGATAAATTATTACACTCCCGTTACTCCTCACCTTCGAAGTCAGCCTGTTTATAT
CCAGTATTCCAATCACCGAGAACTTAAGACTGACAATCTGCCCAATCAGGCTAGAGCCCAAGCT
GCACTGCAGGCTGTCAGTGCAGTCCAGTCAGGAAACCTGTCCCTTCCTGGAGCTACTTCCAATG
AAGGCACATTGCTACCTGGGCAGAGCCCTGTGCTCCGGATAATTATTGAAAACCTATTTTACCC
TGTCACTCTGGAAGTTCTCCATCAGATATTTTCTAAATTTGGCACGGTGTTGAAGATTATCACC
TTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTGAATGCGCAGTATG
CCAAAATGGCTCTGGATGGCCAGAATATCTATAATGCGTGCTGCACTCTCCGTATCGACTTCTC
CAAGCTCACCAGCCTTAATGTGAAATACAATAATGACAAAAGCAGAGACTTCACTCGCTTAGAC
CTTCCTACTGGTGATGGTCAGCCATCTCTTGAACCTCCTATGGCTGCTGCATTCGGTGCACCGG
GTATAATGTCCTCTCCATATGCAGGGGCTGCTGGATTTGCCCCAGCCATTGCATTTCCTCAAGC
AGCAGGTCTGTCCGTCTCGGCTGTTCCTGGAGCCCTTGGTCCTCTCACACTTACTTCCTCTGCT
GTCAGTGGAAGGATGGCCATTCCTGGGGCAAGTGGTATACCAGGGAATTCCGTTCTGCTGGTCA
CCAACCTCAATCCTGACTTTATCACACCACATGGGCTTTTTATCCTATTTGGAGTGTATGGTGA
TGTACATCGAGTGAAGATTATGTTTAACAAGAAAGAAAATGCCTTGGTGCAGATGGCCGATGCG
AGTCAAGCCCAGATAGCAATGAACCACCTAAGTGGTCAGAGACTTTATGGAAAAGTACTTCGGG
CTACACTGTCCAAACATCAAGCTGTCCAGCTCCCTAGAGAGGGACAAGAAGACCAAGGTCTGAC
CAAGGACTTCAGCAATAGTCCCCTGCATCGCTTTAAAAAGCCTGGCTCAAAGAACTTCCAAAAC
ATCTTCCCTCCGTCAGCCACACTGCATCTCTCCAACATTCCTCCTTCTGTTACAATGGATGATC
TGAAGAACCTGTTCACGGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAGGACCG
TAAGATGGCACTCATTCAGTTGGGATCTGTGGAGGAAGCAATCCAGGCCCTTATTGAGCTTCAC
AATCATGACCTTGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCCACCATCTGATCTG
TCTGTGAAATTCTCTCCTTGTATTGGACCATAATTTCTGTAAATCTTCAGGCACAGACTGAAGC
AGTTCAGGACCAGCTCTGCCTCTTCCATAAAAGTAACTCTTGGAGTCTGACTGATACTCAAGTA
CGACAGCTACTCCTTTCCTCTCATTTCCCCTACCACTGTATGATCAAAAGTTTGCTTTTCCTTT
GTATTGTGGTTTCTATGAAAATAACTTTCAGGAAAAAAAATCAGGAAAGTATATTTTAAATAAT
TTAATTCCCTGAATTAGATTTCAGAAGGACAGACTTTCTTTATGTTTGGGTCCAGATCAGCCTT
ACATGACATTTCTAAACTCCTTTGTACTTTGAGAAATTTAAACATACAGCCTTTTGCAATTTCT
TGATGTAATTTAAATCACCTTCTACTAAGTTTTTAACTTTATGATTCAGAAGTTTCCCTGTAGA
ACGTGACATTCATTCACTTGTAAGACTTGTACCAGATGTTTGCACCTATTGATAGCTTATTATA
CACAACCACACGGAGTTGTATTGGAAACAGGTCTATAGACATGCATGCTTCCTTTAGTCTTCTT
TCCCCCTCCTGTGTTACACTCCTTTGAATAATGCATATCTTCTCTTTTTAAGACTATTTGGAAA
AGCAAAGTGTTGCAACTGTCCCCAGGGAAATAGAAGTGAAATTCAGCCTGGATCTATTACAATA
TCAGCATAATTAGTCATTTTAGAAAAAAAAATCATGTTTTAAATTTCAAAATGACATTTGTCTA
GTAATGTAATGTGATCTTGGAAAATTTTAAAAGAAAATAATCCTACTTTTTTATAATTGTTTTC
AGAAAAAAGTTTACAGTCTTAAGGAAAAATATTCAGGTCTATCATATGGTTTGACAGAGTTTTT
AAAAGTTATTTTTGGTAAGGTCTTCTTTTAGAAAAAAAAATCTCAAGGGTTTTTTGTACCACTA
TAATCTCTAATACTCAGAATTACTGTGTACTTACTTAATTTCTTATTATGTGCCTTATTATGTG
CTTAAGATATAATAGGTTAGGATTTTATCTAAATATCTAGGAAGATAAATTGTGGGCTTGGTGA
GCATTCTGTTATTTCTTTCCTTGTCTTGGATTTTAAGGGGTTTGGTTGTTTTGTTTTGTTTTTC
TTTTTCATCACAGTTTTAAGTGGTTTTCAATAAGTAATCGTTTCTATTCAGATCTTTGGTGCTT
TGGTATAGTGATGGGATAGAGAAGGGTGAGGGTTTGGGAATAAATAACTCAGTGTGCACCTGTA
GGCCTCTACATCATGACTGCTGGTTACTGCCAGCGTCAGTGTAGTCAGAGCTGTAGAACTGCAG
CCTCCGTTCTGAATCTGCCTAACCTTTACTGCCCGTTAGAACTCGTCTCAGGACTACTTGATTC
TTTCTTAGTGCTCAAGTGAGAACTTGATCTTCTTTGTTAATGCGACTTCCTTACAGCTAGCTAG
CACACAGATTTGGAGTGTTAGAAGTGGGTTATTTTTTATATTCTGACCCTCTTACTGTTTTGGT
TGAGTGTAAAAGTACATGTTAATGTTGCCTCAGTGATTGTGTCATGTAAATTTATTCTTTTAAT
ATGAGACTGCTTTTTTTAATTCTTCAGTGCTTGATTGGTTTTTAAAATACAGAATTTGTCAGAG
GGATCAATTTTGTCCACCCCTTCTCACTTTTAATAATCTCAGAGTGGATCATCTCATCTTTGAA
AAAGTATATCAGTCTTTACTTTCAGCTATTAATTTGAACATTACTTTTTTTTTAAAGAAAGGAA
GAAAATTTTCATAGAAGCTGAAAGAGGTAACTATAGGTTGGTTAGAGTCAAATCAGAATTCCCT
CAGTGCAGAGCAACTGCTGGTAGGCTAGGCAGGGAAATGCTAGACGGGGCATTTCACATGGCTC
ACCTCCATGTTGGCTGAATAGATCGGTGTGACAGTTCTCCAGTGGGTGTTTTCCCACTTACATT
TGAGGTGTATTTTCACCTGAATACTGAATAAGGGAGGGAAAAAATTAGGACTGTCTCCTCAAAT
TTGCTTTTCTTTTTTTCTCACACAGACATTATTTTCAGTGTCATTTTAAATTGGATTGCTTCCT
TTATTTTGAGTTGGGAACTACTATGTAATTTATTAATTCTTGGCATTCGTAACATCCAGCATAA
GTGTAGCAAAAGTTATTGAGAACAGAAGGGAAATCATAGTGGTGTTGAATGTAATTTTGAACTA
GGGATGGCCTTTAATTTGAGAGAGAACATTGAAATCCTTTTCAGGGATTTGTGTAGATATGTGT
GTGTGTGTATGTGTGTGTATAAATAAGTGTATATACATACATATACTCTTTTAATGTTATATAT
ACATATGCACATTACGTACATTTTAATTTATTGACAAAATTAACAATGATTTGAGAACGTAGGA
TATGCTTGTTTTAAAAGAGCATGTTTGAAGCCATCAGATTGTGTCTAAAATTAGCTGTAGCATA
TGGATGCTGTCCATATTTGAGCTCTTTACTGTTTGAATTATAGAGGTCTACAGTATTTGTGTTA
AATATCAGGGTGGTGGAGAAATTTGGTCTGTGTATTTTTATTTTGGCATGCGCTGATTCAGGAT
CTTTTAAGCAGTGGTTTATTTGTGCTGTTGACCTGTGACGACTTGCAGAGATAATTTACTTTGT
TTTGTCACTTTTGGGTGTCCTGACTTTACTTCATAAAGCATATACATTCAGGACTTAAGGAAAT
AGCAGTGCACCTTCAATAATATCATTACATGTCAAGATGTCTTACTTTGGGATTTGGATGTGTT
TTGTGACAGGTGAGAATATATTCTCTTAGTTGACAGTTTGTTACACCTTCAGGATTACCTGGTA
CCCCCACAGAATGTCATGAGATCTTTGGGACTAAATGCCAGCTCTTAGTGTTTGCACTGAATGT
TTCAGAGTCATGGTTGCAGCTTCCTCCTTTGTCTTTCCCCACTGTGGTGAGTAAGGGTCCTGTT
GAGGTTTGGAATGAGCCCTTATGATCCAGGCATAGTAGCACACAGCTGCAGTTGAAGCACTGGA
GGAAGATGATGGTTGTGACTTTAAACCCAGCCTGGACCGAAGGCCATGGTCCGTGCTAGTCTTG
GCATTACAGAAGACCGGTGCCTTCCTTTCCCCAATTAATCTACTGTCAACTTTTAAGTCTTCAT
CATGTCATTTACTTGAGTATATTAATGTGCAGTTCCTTGTTTAGTCCCATTAAATATTTTTGCA
TTAAAAAAACGACAAGCTCAGAAATAATGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCA
GTGAATCTACTTGTAAACCCCAAACTTATCTCTTAGAAAACTCAGTGTGTATTGCTATTTTTAT
AACCAAAAAGCATGGCTATGATCGGAGCATTTTTCTTAGCCTTTCTTTTGTCTTGATCTCTTGT
CCATGGGAATAAAACTGCCAGACTTAAATCCTCACTATTGTGCTAAAGCAGACACAATTTAGAT
TGTACATAACCTTGCCATGTAACTCAGCTGTCTCTTTAAGGATCGTGTTAGGGTTAGACTGTTT
GCAGTCCTTTTTCAGAGCAAATCCGAACAGGTACTTGTGAATTGTTTAAAAAATAGAAAATTAC
AGAAATCTTAATTTGGGGCGGGTCTTAAAGGGAGAAAACAAACCAGGACCAAAGTTTATGTGCC
TTTTTCAGTAGTCTTAATTGATCTTTTCTTCCTATTTGAGACTAAGGTAACATTCGGATTTTGG
TTTTCAGGAAATATCTACTATATAGATTAAAGGAATGTTGTTCTACAAACTGTTCACACAAGCG
AATAGTTAGAACTGAATAAAAAGTTACACTCTTGCCTTCAGCACCTAATGCCGAGCATTGAACC
AAACAAGAGCAGAGCTGCTCCATCTTCATGTTGGTCACTTGGCTGTCACAGCTCGTCAGGGACC
TTGGTGTTGATAGCAGCCATAACCGAAAGCTGCCTGTGGCAAACTTCACTTAACACTGTCAGCA
GTGCATTGTCATGTTCTCTGTAGTAGTTGTAAGAACAGGTATTTTAGGTAGGAGAGTTTTGGGG
GGTTTTTTGGAGCCATTAAGACTATCATACTCTAGTCCTTTTTGTTTCTTGCTTGTCTTTTGTT
GTTTGTTTTTGTTTTTTCCTTGCCACTCATTGTTACCCAGATCTTTAAAAACATCCCATATCCA
GGAAGTACTAATTACAAAGATTGCTGACCACACCAAGTTTTACATTGAAATTTCACCTCATTGC
TCTGACCAAAGACTGCTTGTTCTGGTTTTAACTCATTTTCCCTGAGCTCTTTTCTGAAAGATAA
CATGCAGAGCGGCCTTGACTTTTCATTTTCTATTGGTGAATAGACTGCTTAGAGAAAATGGGAG
TTTACTATGAACAGAGTGGGACAGCAACGATGGATAGTTATTTTCAGTACTGTATTTGAGGGGG
GCAAATAGCACAGCTAGAAGCCTCTAACATTGTCTAGTGTTTTACATGGTCTGTTCATAAAATT
CCCTTTTTCTGTTTGTAAGAATGTTCATCTAACAGAAGAAAATGCTGTAAATATTTGTAACAAC
TTTTTTTAAAACCAGGCCAAAAAAGAAAAAAAAAGGTTTTCGGGAACAAGTTAACATATAAAGT
GGTTTTATATAAAACAGCGATTGTCTTGTATATTTTGATAAACAGCAGTACCAGATTTCATTTG
TAATACAGTTTGTGGTATTGGAAGAAAAGGATTCTGTGATTGTCTAAGTGAATTATGTTATAAA
TGCAAAAAGGAGAAAATATTAAAAACCATATTTTCTAACTGTGTAGTGCATGGTTAATTTAAGC
TTCTGTACACTACAATATTGATTCCGTTTCCCTTCGGTTTGTATATTTGATAACTGTTTCTTGG
AATCTCAGTCTCTTTTCCTAACACGTATAGCATTGTAGCATGCCTTTTAATAAATGTCATGGCA
TCTGTACTCTCTTAA

hide sequence

RefSeq Acc Id:

XM_006238207 ⟹ XP_006238269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,108,376 - 79,194,533 (-)	NCBI
mRatBN7.2	5	74,313,536 - 74,399,439 (-)	NCBI
Rnor_6.0	5	76,670,074 - 76,756,196 (-)	NCBI
Rnor_5.0	5	80,807,961 - 80,893,974 (-)	NCBI

Sequence:

show sequence

GGAGGGCGGGGGCGCGGCGCTGGCGAGAGCGTGCCCGGTCCCCGCCCCTGTTTCCCACTCTTCC
TTCCACCTCTGACCGGCCGGGCTGCGGAGCGGCTCCGCTCGCAGGTCCCGGGAGCCGCCGCCCG
CTTCCTCCGCCCGCGGTGAGCCCGTCAATCCCCGCACAACGCGCTCCTCCATCTGGGCCATGGA
TGGTGTTGTTACAGATCTTATAGCAGTCGGTTTAAAGCGGGGATCTGATGAGCTTCTTCCTTCT
GGTGTCATTAACGGACCTTCTACCATGAACAATTCTACTTCTGCAGCTAATGGGAATGACAACA
AGAAATTTAAAGGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCC
ATGTGATGTCACCGAAGCAGAGGTCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTT
TTGATGTTGAAAGGAAAAAGCCAGGCCTTTTTGGAAATGGCTTCTGAAGAAGCTGCTGTTACTA
TGATAAATTATTACACTCCCGTTACTCCTCACCTTCGAAGTCAGCCTGTTTATATCCAGTATTC
CAATCACCGAGAACTTAAGACTGACAATCTGCCCAATCAGGCTAGAGCCCAAGCTGCACTGCAG
GCTGTCAGTGCAGTCCAGTCAGGAAACCTGTCCCTTCCTGGAGCTACTTCCAATGAAGGCACAT
TGCTACCTGGGCAGAGCCCTGTGCTCCGGATAATTATTGAAAACCTATTTTACCCTGTCACTCT
GGAAGTTCTCCATCAGATATTTTCTAAATTTGGCACGGTGTTGAAGATTATCACCTTTACAAAG
AATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTGAATGCGCAGTATGCCAAAATGG
CTCTGGATGGCCAGAATATCTATAATGCGTGCTGCACTCTCCGTATCGACTTCTCCAAGCTCAC
CAGCCTTAATGTGAAATACAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACT
GGTGATGGTCAGCCATCTCTTGAACCTCCTATGGCTGCTGCATTCGGTGCACCGGGTATAATGT
CCTCTCCATATGCAGGGGCTGCTGGATTTGCCCCAGCCATTGCATTTCCTCAAGCAGCAGGTCT
GTCCGTCTCGGCTGTTCCTGGAGCCCTTGGTCCTCTCACACTTACTTCCTCTGCTGTCAGTGGA
AGGATGGCCATTCCTGGGGCAAGTGGTATACCAGGGAATTCCGTTCTGCTGGTCACCAACCTCA
ATCCTGACTTTATCACACCACATGGGCTTTTTATCCTATTTGGAGTGTATGGTGATGTACATCG
AGTGAAGATTATGTTTAACAAGAAAGAAAATGCCTTGGTGCAGATGGCCGATGCGAGTCAAGCC
CAGATAGCAATGAACCACCTAAGTGGTCAGAGACTTTATGGAAAAGTACTTCGGGCTACACTGT
CCAAACATCAAGCTGTCCAGCTCCCTAGAGAGGGACAAGAAGACCAAGGTCTGACCAAGGACTT
CAGCAATAGTCCCCTGCATCGCTTTAAAAAGCCTGGCTCAAAGAACTTCCAAAACATCTTCCCT
CCGTCAGCCACACTGCATCTCTCCAACATTCCTCCTTCTGTTACAATGGATGATCTGAAGAACC
TGTTCACGGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAGGACCGTAAGATGGC
ACTCATTCAGTTGGGATCTGTGGAGGAAGCAATCCAGGCCCTTATTGAGCTTCACAATCATGAC
CTTGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCCACCATCTGATCTGTCTGTGAAA
TTCTCTCCTTGTATTGGACCATAATTTCTGTAAATCTTCAGGCACAGACTGAAGCAGTTCAGGA
CCAGCTCTGCCTCTTCCATAAAAGTAACTCTTGGAGTCTGACTGATACTCAAGTACGACAGCTA
CTCCTTTCCTCTCATTTCCCCTACCACTGTATGATCAAAAGTTTGCTTTTCCTTTGTATTGTGG
TTTCTATGAAAATAACTTTCAGGAAAAAAAATCAGGAAAGTATATTTTAAATAATTTAATTCCC
TGAATTAGATTTCAGAAGGACAGACTTTCTTTATGTTTGGGTCCAGATCAGCCTTACATGACAT
TTCTAAACTCCTTTGTACTTTGAGAAATTTAAACATACAGCCTTTTGCAATTTCTTGATGTAAT
TTAAATCACCTTCTACTAAGTTTTTAACTTTATGATTCAGAAGTTTCCCTGTAGAACGTGACAT
TCATTCACTTGTAAGACTTGTACCAGATGTTTGCACCTATTGATAGCTTATTATACACAACCAC
ACGGAGTTGTATTGGAAACAGGTCTATAGACATGCATGCTTCCTTTAGTCTTCTTTCCCCCTCC
TGTGTTACACTCCTTTGAATAATGCATATCTTCTCTTTTTAAGACTATTTGGAAAAGCAAAGTG
TTGCAACTGTCCCCAGGGAAATAGAAGTGAAATTCAGCCTGGATCTATTACAATATCAGCATAA
TTAGTCATTTTAGAAAAAAAAATCATGTTTTAAATTTCAAAATGACATTTGTCTAGTAATGTAA
TGTGATCTTGGAAAATTTTAAAAGAAAATAATCCTACTTTTTTATAATTGTTTTCAGAAAAAAG
TTTACAGTCTTAAGGAAAAATATTCAGGTCTATCATATGGTTTGACAGAGTTTTTAAAAGTTAT
TTTTGGTAAGGTCTTCTTTTAGAAAAAAAAATCTCAAGGGTTTTTTGTACCACTATAATCTCTA
ATACTCAGAATTACTGTGTACTTACTTAATTTCTTATTATGTGCCTTATTATGTGCTTAAGATA
TAATAGGTTAGGATTTTATCTAAATATCTAGGAAGATAAATTGTGGGCTTGGTGAGCATTCTGT
TATTTCTTTCCTTGTCTTGGATTTTAAGGGGTTTGGTTGTTTTGTTTTGTTTTTCTTTTTCATC
ACAGTTTTAAGTGGTTTTCAATAAGTAATCGTTTCTATTCAGATCTTTGGTGCTTTGGTATAGT
GATGGGATAGAGAAGGGTGAGGGTTTGGGAATAAATAACTCAGTGTGCACCTGTAGGCCTCTAC
ATCATGACTGCTGGTTACTGCCAGCGTCAGTGTAGTCAGAGCTGTAGAACTGCAGCCTCCGTTC
TGAATCTGCCTAACCTTTACTGCCCGTTAGAACTCGTCTCAGGACTACTTGATTCTTTCTTAGT
GCTCAAGTGAGAACTTGATCTTCTTTGTTAATGCGACTTCCTTACAGCTAGCTAGCACACAGAT
TTGGAGTGTTAGAAGTGGGTTATTTTTTATATTCTGACCCTCTTACTGTTTTGGTTGAGTGTAA
AAGTACATGTTAATGTTGCCTCAGTGATTGTGTCATGTAAATTTATTCTTTTAATATGAGACTG
CTTTTTTTAATTCTTCAGTGCTTGATTGGTTTTTAAAATACAGAATTTGTCAGAGGGATCAATT
TTGTCCACCCCTTCTCACTTTTAATAATCTCAGAGTGGATCATCTCATCTTTGAAAAAGTATAT
CAGTCTTTACTTTCAGCTATTAATTTGAACATTACTTTTTTTTTAAAGAAAGGAAGAAAATTTT
CATAGAAGCTGAAAGAGGTAACTATAGGTTGGTTAGAGTCAAATCAGAATTCCCTCAGTGCAGA
GCAACTGCTGGTAGGCTAGGCAGGGAAATGCTAGACGGGGCATTTCACATGGCTCACCTCCATG
TTGGCTGAATAGATCGGTGTGACAGTTCTCCAGTGGGTGTTTTCCCACTTACATTTGAGGTGTA
TTTTCACCTGAATACTGAATAAGGGAGGGAAAAAATTAGGACTGTCTCCTCAAATTTGCTTTTC
TTTTTTTCTCACACAGACATTATTTTCAGTGTCATTTTAAATTGGATTGCTTCCTTTATTTTGA
GTTGGGAACTACTATGTAATTTATTAATTCTTGGCATTCGTAACATCCAGCATAAGTGTAGCAA
AAGTTATTGAGAACAGAAGGGAAATCATAGTGGTGTTGAATGTAATTTTGAACTAGGGATGGCC
TTTAATTTGAGAGAGAACATTGAAATCCTTTTCAGGGATTTGTGTAGATATGTGTGTGTGTGTA
TGTGTGTGTATAAATAAGTGTATATACATACATATACTCTTTTAATGTTATATATACATATGCA
CATTACGTACATTTTAATTTATTGACAAAATTAACAATGATTTGAGAACGTAGGATATGCTTGT
TTTAAAAGAGCATGTTTGAAGCCATCAGATTGTGTCTAAAATTAGCTGTAGCATATGGATGCTG
TCCATATTTGAGCTCTTTACTGTTTGAATTATAGAGGTCTACAGTATTTGTGTTAAATATCAGG
GTGGTGGAGAAATTTGGTCTGTGTATTTTTATTTTGGCATGCGCTGATTCAGGATCTTTTAAGC
AGTGGTTTATTTGTGCTGTTGACCTGTGACGACTTGCAGAGATAATTTACTTTGTTTTGTCACT
TTTGGGTGTCCTGACTTTACTTCATAAAGCATATACATTCAGGACTTAAGGAAATAGCAGTGCA
CCTTCAATAATATCATTACATGTCAAGATGTCTTACTTTGGGATTTGGATGTGTTTTGTGACAG
GTGAGAATATATTCTCTTAGTTGACAGTTTGTTACACCTTCAGGATTACCTGGTACCCCCACAG
AATGTCATGAGATCTTTGGGACTAAATGCCAGCTCTTAGTGTTTGCACTGAATGTTTCAGAGTC
ATGGTTGCAGCTTCCTCCTTTGTCTTTCCCCACTGTGGTGAGTAAGGGTCCTGTTGAGGTTTGG
AATGAGCCCTTATGATCCAGGCATAGTAGCACACAGCTGCAGTTGAAGCACTGGAGGAAGATGA
TGGTTGTGACTTTAAACCCAGCCTGGACCGAAGGCCATGGTCCGTGCTAGTCTTGGCATTACAG
AAGACCGGTGCCTTCCTTTCCCCAATTAATCTACTGTCAACTTTTAAGTCTTCATCATGTCATT
TACTTGAGTATATTAATGTGCAGTTCCTTGTTTAGTCCCATTAAATATTTTTGCATTAAAAAAA
CGACAAGCTCAGAAATAATGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCAGTGAATCTA
CTTGTAAACCCCAAACTTATCTCTTAGAAAACTCAGTGTGTATTGCTATTTTTATAACCAAAAA
GCATGGCTATGATCGGAGCATTTTTCTTAGCCTTTCTTTTGTCTTGATCTCTTGTCCATGGGAA
TAAAACTGCCAGACTTAAATCCTCACTATTGTGCTAAAGCAGACACAATTTAGATTGTACATAA
CCTTGCCATGTAACTCAGCTGTCTCTTTAAGGATCGTGTTAGGGTTAGACTGTTTGCAGTCCTT
TTTCAGAGCAAATCCGAACAGGTACTTGTGAATTGTTTAAAAAATAGAAAATTACAGAAATCTT
AATTTGGGGCGGGTCTTAAAGGGAGAAAACAAACCAGGACCAAAGTTTATGTGCCTTTTTCAGT
AGTCTTAATTGATCTTTTCTTCCTATTTGAGACTAAGGTAACATTCGGATTTTGGTTTTCAGGA
AATATCTACTATATAGATTAAAGGAATGTTGTTCTACAAACTGTTCACACAAGCGAATAGTTAG
AACTGAATAAAAAGTTACACTCTTGCCTTCAGCACCTAATGCCGAGCATTGAACCAAACAAGAG
CAGAGCTGCTCCATCTTCATGTTGGTCACTTGGCTGTCACAGCTCGTCAGGGACCTTGGTGTTG
ATAGCAGCCATAACCGAAAGCTGCCTGTGGCAAACTTCACTTAACACTGTCAGCAGTGCATTGT
CATGTTCTCTGTAGTAGTTGTAAGAACAGGTATTTTAGGTAGGAGAGTTTTGGGGGGTTTTTTG
GAGCCATTAAGACTATCATACTCTAGTCCTTTTTGTTTCTTGCTTGTCTTTTGTTGTTTGTTTT
TGTTTTTTCCTTGCCACTCATTGTTACCCAGATCTTTAAAAACATCCCATATCCAGGAAGTACT
AATTACAAAGATTGCTGACCACACCAAGTTTTACATTGAAATTTCACCTCATTGCTCTGACCAA
AGACTGCTTGTTCTGGTTTTAACTCATTTTCCCTGAGCTCTTTTCTGAAAGATAACATGCAGAG
CGGCCTTGACTTTTCATTTTCTATTGGTGAATAGACTGCTTAGAGAAAATGGGAGTTTACTATG
AACAGAGTGGGACAGCAACGATGGATAGTTATTTTCAGTACTGTATTTGAGGGGGGCAAATAGC
ACAGCTAGAAGCCTCTAACATTGTCTAGTGTTTTACATGGTCTGTTCATAAAATTCCCTTTTTC
TGTTTGTAAGAATGTTCATCTAACAGAAGAAAATGCTGTAAATATTTGTAACAACTTTTTTTAA
AACCAGGCCAAAAAAGAAAAAAAAAGGTTTTCGGGAACAAGTTAACATATAAAGTGGTTTTATA
TAAAACAGCGATTGTCTTGTATATTTTGATAAACAGCAGTACCAGATTTCATTTGTAATACAGT
TTGTGGTATTGGAAGAAAAGGATTCTGTGATTGTCTAAGTGAATTATGTTATAAATGCAAAAAG
GAGAAAATATTAAAAACCATATTTTCTAACTGTGTAGTGCATGGTTAATTTAAGCTTCTGTACA
CTACAATATTGATTCCGTTTCCCTTCGGTTTGTATATTTGATAACTGTTTCTTGGAATCTCAGT
CTCTTTTCCTAACACGTATAGCATTGTAGCATGCCTTTTAATAAATGTCATGGCATCTGTACTC
TCTTAA

hide sequence

RefSeq Acc Id:

XM_039110848 ⟹ XP_038966776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,108,376 - 79,194,533 (-)	NCBI
mRatBN7.2	5	74,313,536 - 74,399,353 (-)	NCBI

RefSeq Acc Id:

XM_063288481 ⟹ XP_063144551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	79,108,376 - 79,191,332 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_112636	(Get FASTA)	NCBI Sequence Viewer
	XP_006238268	(Get FASTA)	NCBI Sequence Viewer
	XP_006238269	(Get FASTA)	NCBI Sequence Viewer
	XP_038966776	(Get FASTA)	NCBI Sequence Viewer
	XP_063144551	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA75465	(Get FASTA)	NCBI Sequence Viewer
	EDL91638	(Get FASTA)	NCBI Sequence Viewer
	EDL91639	(Get FASTA)	NCBI Sequence Viewer
	EDL91640	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022107
	ENSRNOP00000069354
	ENSRNOP00000092713
	ENSRNOP00000104044
GenBank Protein	Q9Z118	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112636 ⟸ NM_031346

- UniProtKB:

Q9Z118 (UniProtKB/Swiss-Prot), A0A8L2UJS5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNNSTSAGVYANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG
KSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAV
QSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQ
ALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQP
SLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIP
GASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMN
HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATL
HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
HLRVSFSKSTI

hide sequence

RefSeq Acc Id:	XP_006238269 ⟸ XM_006238207
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JV54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGVVTDLIAVGLKRGSDELLPSGVINGPSTMNNSTSAANGNDNKKFKGDRPPCSPSRVLHLRK IPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQ YSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPV TLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSK LTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAA GLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDV HRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTK DFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRK MALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI hide sequence

RefSeq Acc Id:	XP_006238268 ⟸ XM_006238206
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JV54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGVVTDLIAVGLKRGSDELLPSGVINGPSTMNNSTSAGVYANGNDNKKFKGDRPPCSPSRVLH LRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPV YIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLF YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRID FSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFP QAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVY GDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQG LTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQK DRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI hide sequence

Ensembl Acc Id:

ENSRNOP00000069354 ⟸ ENSRNOT00000089251

Ensembl Acc Id:

ENSRNOP00000022107 ⟸ ENSRNOT00000022107

RefSeq Acc Id:	XP_038966776 ⟸ XM_039110848
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AIH3 (UniProtKB/TrEMBL), A6KDW6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092713 ⟸ ENSRNOT00000116337

Ensembl Acc Id:

ENSRNOP00000084394 ⟸ ENSRNOT00000118205

RefSeq Acc Id:	XP_063144551 ⟸ XM_063288481
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2UJS5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098748 ⟸ ENSRNOT00000136659

Ensembl Acc Id:

ENSRNOP00000104044 ⟸ ENSRNOT00000157596

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z118-F1-model_v2	AlphaFold	Q9Z118	1-523	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693771

Promoter ID:

EPDNEW_R4295

Type:

multiple initiation site

Name:

Ptbp3_1

Description:

polypyrimidine tract binding protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	76,756,140 - 76,756,200	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621671	AgrOrtholog
BioCyc Gene	G2FUF-41150	BioCyc
Ensembl Genes	ENSRNOG00000016334	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000022107	ENTREZGENE
	ENSRNOT00000089251	ENTREZGENE
	ENSRNOT00000116337	ENTREZGENE
	ENSRNOT00000157596	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	HnRNP-L/PTB	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	PTBP1_RRM	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	ROD1_RRM1	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:83515	UniProtKB/Swiss-Prot
NCBI Gene	83515	ENTREZGENE
PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
	RRM_5	UniProtKB/Swiss-Prot
	RRM_8	UniProtKB/Swiss-Prot
PhenoGen	Ptbp3	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016334	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIH3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UJS5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LDE8_RAT	UniProtKB/TrEMBL
	A0ABK0LGZ4_RAT	UniProtKB/TrEMBL
	A6KDW6	ENTREZGENE, UniProtKB/TrEMBL
	PTBP3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-12-06	Ptbp3	polypyrimidine tract binding protein 3	Rod1	ROD1 regulator of differentiation 1 (S. pombe)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rod1	ROD1 regulator of differentiation 1 (S. pombe)		regulator of differentiation (in S. pombe) 1	Name updated	1299863	APPROVED
2002-08-07	Rod1	regulator of differentiation (in S. pombe) 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains four RNA binding domains	704461
gene_expression	expressed in hematopoetic cells and tissues	704461

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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