Asah1 (N-acylsphingosine amidohydrolase 1) - Rat Genome Database

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Gene: Asah1 (N-acylsphingosine amidohydrolase 1) Rattus norvegicus
Analyze
Symbol: Asah1
Name: N-acylsphingosine amidohydrolase 1
RGD ID: 621568
Description: Predicted to enable N-acylsphingosine amidohydrolase activity; nuclear receptor binding activity; and transcription corepressor activity. Involved in lung development. Predicted to be located in extracellular space; lysosome; and nucleus. Human ortholog(s) of this gene implicated in Farber lipogranulomatosis; sphingolipidosis; and spinal muscular atrophy with progressive myoclonic epilepsy. Orthologous to human ASAH1 (N-acylsphingosine amidohydrolase 1); PARTICIPATES IN ceramide signaling pathway; sphingolipid metabolic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AC; ACDase; acid CDase; acid ceramidase; acylsphingosine deacylase; Asah; N-acylethanolamine hydrolase ASAH1; N-acylsphingosine amidohydrolase (acid ceramidase); N-acylsphingosine amidohydrolase (acid ceramidase) 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81657,669,927 - 57,701,349 (+)NCBIGRCr8
mRatBN7.21650,966,404 - 50,997,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1650,966,229 - 51,008,233 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,286,045 - 56,317,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01659,685,411 - 59,716,841 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01654,919,980 - 54,951,496 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01653,998,604 - 54,030,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1653,998,560 - 54,040,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01653,712,315 - 53,743,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,279,253 - 54,311,084 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,279,327 - 54,311,158 (+)NCBI
Celera1648,861,616 - 48,893,051 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Asah1Ratsphingolipidosis susceptibilityISOASAH1 (Homo sapiens)734977 RGD 
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Original Reference(s)
Asah1Ratbenign epilepsy with centrotemporal spikes  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Rolandic epilepsyClinVarPMID:25741868 more ...
Asah1RatFarber lipogranulomatosis  ISOASAH1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10610716 more ...
Asah1Ratfetal akinesia deformation sequence syndrome 1  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Fetal akinesia deformation sequence 1ClinVarPMID:25741868 more ...
Asah1Ratgenetic disease  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17576681 more ...
Asah1Rathereditary spastic paraplegia 53  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 53ClinVarPMID:28492532
Asah1RatKeloid  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Keloid formationClinVarPMID:28492532 and PMID:28905881
Asah1RatNervous System Malformations  ISOASAH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of the nervous systemClinVarPMID:25741868
Asah1Ratspinal muscular atrophy with progressive myoclonic epilepsy  ISOASAH1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
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Original Reference(s)
Asah1Ratatrial fibrillation  ISOASAH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29892015 and PMID:30061737
Asah1RatExperimental Liver Cirrhosis  ISOASAH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Asah1RatFarber lipogranulomatosis  ISOASAH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Asah1Ratlipid storage disease  ISOASAH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15342952 and PMID:16919414
Asah1Ratpneumoconiosis  ISOASAH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35506645
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Original Reference(s)
Asah1RatFarber lipogranulomatosis  ISSAsah1 (Mus musculus)13592920OMIM:228000MouseDO 
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Asah1RatFarber lipogranulomatosis  ISOASAH1 (Homo sapiens)7240710 OMIM 
Asah1Ratspinal muscular atrophy with progressive myoclonic epilepsy  ISOASAH1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Asah1Rat1,1-dichloroethene increases expressionISOAsah1 (Mus musculus)6480464vinylidene chloride results in increased expression of ASAH1 mRNACTDPMID:26682919
Asah1Rat1,2-dichloroethane decreases expressionISOAsah1 (Mus musculus)6480464ethylene dichloride results in decreased expression of ASAH1 mRNACTDPMID:28960355
Asah1Rat1,2-dimethylhydrazine multiple interactionsISOAsah1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ASAH1 mRNACTDPMID:22206623
Asah1Rat1,2-dimethylhydrazine decreases expressionISOAsah1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ASAH1 mRNACTDPMID:22206623
Asah1Rat1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine increases expressionISOASAH1 (Homo sapiens)6480464chlorcyclizine results in increased expression of ASAH1 mRNACTDPMID:15342952
Asah1Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of ASAH1 mRNACTDPMID:25380136
Asah1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of ASAH1 mRNACTDPMID:16174780
Asah1Rat17alpha-ethynylestradiol increases expressionISOAsah1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ASAH1 mRNACTDPMID:17942748
Asah1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ASAH1 mRNACTDPMID:32145629
Asah1Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOASAH1 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of ASAH1 mRNACTDPMID:29581250
Asah1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ASAH1 mRNACTDPMID:21215274 and PMID:32109520
Asah1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ASAH1 mRNACTDPMID:34747641
Asah1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOASAH1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of ASAH1 mRNACTDPMID:23152189
Asah1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAsah1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ASAH1 mRNACTDPMID:21570461
Asah1Rat2,3,7,8-Tetrachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:32109520
Asah1Rat2,3,7,8-Tetrachlorodibenzofuran increases expressionISOAsah1 (Mus musculus)64804642 more ...CTDPMID:34097992
Asah1Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of ASAH1 mRNACTDPMID:21346803
Asah1Rat3,4-methylenedioxymethamphetamine decreases expressionEXP 6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of ASAH1 mRNACTDPMID:30071829
Asah1Rat3H-1,2-dithiole-3-thione decreases expressionEXP 64804641 and 2-dithiol-3-thione results in decreased expression of ASAH1 mRNACTDPMID:19162173
Asah1Rat4,4'-diaminodiphenylmethane increases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in increased expression of ASAH1 mRNACTDPMID:25380136

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Biological Process
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Original Reference(s)
Asah1Ratcellular response to tumor necrosis factor involved_inISOAsah1 (Mus musculus)1624291 PMID:10974027RGDPMID:10974027
Asah1Ratcellular response to tumor necrosis factor involved_inIEAUniProtKB:Q9WV54 and ensembl:ENSMUSP000000340001600115GO_REF:0000107EnsemblGO_REF:0000107
Asah1Ratcellular response to tumor necrosis factor involved_inISSUniProtKB:Q9WV541600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratceramide biosynthetic process involved_inISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratceramide biosynthetic process involved_inISOASAH1 (Homo sapiens)1624291 PMID:12764132 and PMID:12815059RGDPMID:12764132 and PMID:12815059
Asah1Ratceramide catabolic process involved_inISOAsah1 (Mus musculus)1624291 PMID:23770692 and PMID:9653654RGDPMID:23770692 and PMID:9653654
Asah1Ratceramide catabolic process involved_inISOASAH1 (Homo sapiens)1624291 PMID:10610716 and PMID:12815059RGDPMID:10610716 and PMID:12815059
Asah1Ratceramide catabolic process involved_inISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratceramide catabolic process involved_inIEAUniProtKB:Q9WV54 and ensembl:ENSMUSP000000340001600115GO_REF:0000107EnsemblGO_REF:0000107
Asah1Ratfatty acid metabolic process involved_inIEAInterPro:IPR0166991600115GO_REF:0000002InterProGO_REF:0000002
Asah1Ratkeratinocyte differentiation involved_inISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratkeratinocyte differentiation involved_inISOASAH1 (Homo sapiens)1624291 PMID:17713573RGDPMID:17713573
Asah1Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Asah1Ratlipid metabolic process involved_inIEAUniRule:UR0011397551600115GO_REF:0000104UniProtGO_REF:0000104
Asah1Ratlung development  IDA 1599262 RGD 
Asah1Ratregulation of programmed necrotic cell death involved_inISSUniProtKB:Q9WV541600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratregulation of programmed necrotic cell death involved_inISOAsah1 (Mus musculus)1624291 PMID:10974027RGDPMID:10974027
Asah1Ratregulation of programmed necrotic cell death involved_inIEAUniProtKB:Q9WV54 and ensembl:ENSMUSP000000340001600115GO_REF:0000107EnsemblGO_REF:0000107
Asah1Ratregulation of steroid biosynthetic process involved_inISOASAH1 (Homo sapiens) and UniProtKB:Q13510-21624291 PMID:22927646RGDPMID:22927646
Asah1Ratregulation of steroid biosynthetic process involved_inISOASAH1 (Homo sapiens)1624291 PMID:22261821RGDPMID:22261821
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Cellular Component
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Original Reference(s)
Asah1Ratearly endosome NOT|located_inISOASAH1 (Homo sapiens)1624291 PMID:12764132RGDPMID:12764132
Asah1Ratendoplasmic reticulum NOT|located_inISOASAH1 (Homo sapiens)1624291 PMID:12764132RGDPMID:12764132
Asah1Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Asah1Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Asah1Ratextracellular space located_inISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratextracellular space located_inISOASAH1 (Homo sapiens)1624291 PMID:11451951 more ...RGDPMID:11451951 more ...
Asah1Ratlysosome located_inIEAInterPro:IPR0166991600115GO_REF:0000002InterProGO_REF:0000002
Asah1Ratlysosome located_inIEAUniProtKB-KW:KW-04581600115GO_REF:0000043UniProtGO_REF:0000043
Asah1Ratlysosome located_inISOASAH1 (Homo sapiens)1624291 PMID:12764132RGDPMID:12764132
Asah1Ratlysosome located_inISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1Ratlysosome located_inIEAUniProtKB-SubCell:SL-01581600115GO_REF:0000044UniProtGO_REF:0000044
Asah1Ratlysosome located_inIEAUniRule:UR0011397551600115GO_REF:0000104UniProtGO_REF:0000104
Asah1Ratmembrane located_inIEAGO:00465121600115GO_REF:0000108GOCGO_REF:0000108
Asah1Ratmembrane located_inIEAGO:00465141600115GO_REF:0000108GOCGO_REF:0000108
Asah1Ratmembrane located_inIEAGO:00066651600115GO_REF:0000108GOCGO_REF:0000108
Asah1Ratnucleus located_inIEAUniProtKB:Q9WV54 and ensembl:ENSMUSP000000340001600115GO_REF:0000107EnsemblGO_REF:0000107
Asah1Ratnucleus located_inISOAsah1 (Mus musculus)1624291 PMID:22927646RGDPMID:22927646
Asah1Ratnucleus located_inISOASAH1 (Homo sapiens) and UniProtKB:Q13510-21624291 PMID:22927646RGDPMID:22927646
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Molecular Function
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Original Reference(s)
Asah1Ratfatty acid amide hydrolase activity enablesIEAInterPro:IPR0166991600115GO_REF:0000002InterProGO_REF:0000002
Asah1Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Asah1Rathydrolase activity, acting on carbon-nitrogen (but not peptide) bonds enablesIEAUniRule:UR0011397551600115GO_REF:0000104UniProtGO_REF:0000104
Asah1Rathydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides enablesISOASAH1 (Homo sapiens)1624291 PMID:15655246RGDPMID:15655246
Asah1RatN-acylsphingosine amidohydrolase activity enablesISSUniProtKB:Q135101600115GO_REF:0000024UniProtGO_REF:0000024
Asah1RatN-acylsphingosine amidohydrolase activity enablesIEAUniProtKB:Q9WV54 and ensembl:ENSMUSP000000340001600115GO_REF:0000107EnsemblGO_REF:0000107
Asah1RatN-acylsphingosine amidohydrolase activity enablesIEARHEA:208561600115GO_REF:0000116RHEAGO_REF:0000116
Asah1RatN-acylsphingosine amidohydrolase activity enablesISOAsah1 (Mus musculus)1624291 PMID:9653654RGDPMID:9653654
Asah1RatN-acylsphingosine amidohydrolase activity enablesIBAMGI:1277124 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Asah1RatN-acylsphingosine amidohydrolase activity enablesISOASAH1 (Homo sapiens)1624291 PMID:10610716 more ...RGDPMID:10610716 more ...
Asah1RatN-acylsphingosine amidohydrolase activity enablesIEAEC:3.5.1.231600115GO_REF:0000003UniProtGO_REF:0000003
Asah1Ratnuclear receptor binding enablesISOASAH1 (Homo sapiens) and UniProtKB:Q13510-21624291UniProtKB:Q13285 and PMID:22927646RGDPMID:22927646
Asah1Ratprotein binding enablesISOASAH1 (Homo sapiens) and UniProtKB:Q13510-21624291UniProtKB:Q13285 and PMID:22927646RGDPMID:22927646
Asah1Ratprotein binding enablesISOASAH1 (Homo sapiens) and UniProtKB:Q13510-31624291UniProtKB:Q9Y5Z0 and PMID:32814053RGDPMID:32814053
Asah1Rattranscription corepressor activity enablesISOASAH1 (Homo sapiens) and UniProtKB:Q13510-21624291 PMID:22927646RGDPMID:22927646
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Asah1Ratsphingolipid metabolic pathway  IEA 6907045 KEGGrno:00600

Imported Annotations - PID (archival)

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Asah1Ratceramide signaling pathway  ISOASAH1 (Homo sapiens)6484113 PIDPID:200119

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#
Reference Title
Reference Citation
1. Molecular analysis of acid ceramidase deficiency in patients with Farber disease. Bar J, etal., Hum Mutat 2001 Mar;17(3):199-209.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Design, synthesis and activity as acid ceramidase inhibitors of 2-oxooctanoyl and N-oleoylethanolamine analogues. Grijalvo S, etal., Chem Phys Lipids. 2006 Oct;144(1):69-84. Epub 2006 Aug 7.
5. Insertional mutagenesis of the mouse acid ceramidase gene leads to early embryonic lethality in homozygotes and progressive lipid storage disease in heterozygotes. Li CM, etal., Genomics 2002 Feb;79(2):218-24.
6. Sphingomyelin metabolism is developmentally regulated in rat lung. Longo CA, etal., Am J Respir Cell Mol Biol. 1997 May;16(5):605-12.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
15. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:7744740   PMID:9653654   PMID:10610716   PMID:10974027   PMID:11451951   PMID:12764132   PMID:12815059   PMID:15655246   PMID:17713573   PMID:19056867   PMID:22206666   PMID:22261821  
PMID:22927646   PMID:23376485   PMID:23533145   PMID:23770692   PMID:25645918  



Asah1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81657,669,927 - 57,701,349 (+)NCBIGRCr8
mRatBN7.21650,966,404 - 50,997,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1650,966,229 - 51,008,233 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,286,045 - 56,317,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01659,685,411 - 59,716,841 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01654,919,980 - 54,951,496 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01653,998,604 - 54,030,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1653,998,560 - 54,040,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01653,712,315 - 53,743,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,279,253 - 54,311,084 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,279,327 - 54,311,158 (+)NCBI
Celera1648,861,616 - 48,893,051 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
ASAH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38818,055,992 - 18,084,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl818,055,992 - 18,084,998 (-)EnsemblGRCh38hg38GRCh38
GRCh37817,913,501 - 17,942,470 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,958,214 - 17,986,787 (-)NCBINCBI36Build 36hg18NCBI36
Build 34817,958,220 - 17,985,900NCBI
Celera816,879,836 - 16,908,397 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef816,458,203 - 16,486,822 (-)NCBIHuRef
CHM1_1818,115,374 - 18,143,960 (-)NCBICHM1_1
T2T-CHM13v2.0818,323,470 - 18,352,414 (-)NCBIT2T-CHM13v2.0
Asah1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,793,683 - 41,850,681 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,793,234 - 41,827,810 (-)EnsemblGRCm39 Ensembl
GRCm38841,340,646 - 41,397,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl841,340,197 - 41,374,773 (-)EnsemblGRCm38mm10GRCm38
MGSCv37842,425,997 - 42,460,051 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36842,839,482 - 42,873,444 (-)NCBIMGSCv36mm8
Celera843,964,022 - 43,997,069 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Asah1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555521,623,738 - 1,659,086 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555521,623,263 - 1,660,285 (+)NCBIChiLan1.0ChiLan1.0
ASAH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2736,528,846 - 36,557,133 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1812,254,484 - 12,282,710 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0817,272,632 - 17,300,902 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1814,226,156 - 14,254,155 (-)NCBIpanpan1.1PanPan1.1panPan2
ASAH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11641,297,215 - 41,335,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1641,297,809 - 41,323,078 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1641,806,175 - 41,854,360 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01643,355,806 - 43,404,107 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1643,355,801 - 43,404,134 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11641,448,325 - 41,495,377 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,993,731 - 42,041,788 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01642,187,013 - 42,233,873 (-)NCBIUU_Cfam_GSD_1.0
Asah1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494337,949,337 - 38,005,322 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936554104,229 - 141,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936554104,666 - 141,761 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASAH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,712,058 - 5,758,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,712,048 - 5,749,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2176,296,192 - 6,333,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASAH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1816,151,974 - 16,181,726 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl816,151,247 - 16,181,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605226,094,678 - 26,124,159 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asah1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476921,112,851 - 21,138,831 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476921,112,705 - 21,140,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Asah1
54 total Variants

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:99
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000013463
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat

1 to 10 of 16 rows
RH144085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21650,988,361 - 50,988,616 (+)MAPPERmRatBN7.2
Rnor_6.01654,020,542 - 54,020,796NCBIRnor6.0
Rnor_5.01653,734,253 - 53,734,507UniSTSRnor5.0
RGSC_v3.41654,301,620 - 54,301,874UniSTSRGSC3.4
Celera1648,883,679 - 48,883,933UniSTS
RH 3.4 Map16523.9UniSTS
Cytogenetic Map16q12.1UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000013463   ⟹   ENSRNOP00000013463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1650,966,372 - 50,997,839 (+)Ensembl
Rnor_6.0 Ensembl1653,998,604 - 54,030,005 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077188   ⟹   ENSRNOP00000074724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1650,966,229 - 51,008,233 (+)Ensembl
Rnor_6.0 Ensembl1653,998,560 - 54,040,836 (+)Ensembl
RefSeq Acc Id: NM_053407   ⟹   NP_445859
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81657,669,927 - 57,701,349 (+)NCBI
mRatBN7.21650,966,404 - 50,997,827 (+)NCBI
Rnor_6.01653,998,604 - 54,030,006 (+)NCBI
Rnor_5.01653,712,315 - 53,743,717 (+)NCBI
RGSC_v3.41654,279,253 - 54,311,084 (+)RGD
Celera1648,861,616 - 48,893,051 (+)RGD
Sequence:
Protein RefSeqs NP_445859 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG43956 (Get FASTA)   NCBI Sequence Viewer  
  AAH61540 (Get FASTA)   NCBI Sequence Viewer  
  EDL78835 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013463.5
  ENSRNOP00000074724.1
  ENSRNOP00000109066
GenBank Protein Q6P7S1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445859   ⟸   NM_053407
- Peptide Label: precursor
- UniProtKB: Q9EQJ6 (UniProtKB/Swiss-Prot),   Q6P7S1 (UniProtKB/Swiss-Prot),   A0A8L2Q768 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074724   ⟸   ENSRNOT00000077188
Ensembl Acc Id: ENSRNOP00000013463   ⟸   ENSRNOT00000013463
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P7S1-F1-model_v2 AlphaFold Q6P7S1 1-394 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700117
Promoter ID:EPDNEW_R10638
Type:initiation region
Name:Asah1_1
Description:N-acylsphingosine amidohydrolase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01653,998,576 - 53,998,636EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-11260 BioCyc
Ensembl Genes ENSRNOG00000010034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013463.5 UniProtKB/TrEMBL
  ENSRNOT00000077188.2 UniProtKB/TrEMBL
  ENSRNOT00000154244 ENTREZGENE
Gene3D-CATH Penicillin V Acylase, Chain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919949 IMAGE-MGC_LOAD
InterPro Acid_ceramidase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acid_ceramidase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CBAH/NAAA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84431 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72746 IMAGE-MGC_LOAD
NCBI Gene 84431 ENTREZGENE
PANTHER ACID AMIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACID CERAMIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CBAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAAA-beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Asah1 PhenoGen
PIRSF Acid_ceramidase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010034 RatGTEx
UniProt A0A0G2K8T0_RAT UniProtKB/TrEMBL
  A0A8L2Q768 ENTREZGENE, UniProtKB/TrEMBL
  A6JPT7_RAT UniProtKB/TrEMBL
  ASAH1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9EQJ6 ENTREZGENE
UniProt Secondary Q9EQJ6 UniProtKB/Swiss-Prot
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-29 Asah1  N-acylsphingosine amidohydrolase 1  Asah1  N-acylsphingosine amidohydrolase (acid ceramidase) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Asah1  N-acylsphingosine amidohydrolase (acid ceramidase) 1  Asah1  N-acylsphingosine amidohydrolase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Asah1  N-acylsphingosine amidohydrolase 1  Asah  N-acylsphingosine amidohydrolase (acid ceramidase)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Asah  N-acylsphingosine amidohydrolase (acid ceramidase)      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_disease deficiency of the human homolog causes Farber disease, a lipid storage disorder 634631