Ptms (parathymosin) - Rat Genome Database

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Gene: Ptms (parathymosin) Rattus norvegicus
Analyze
Symbol: Ptms
Name: parathymosin
RGD ID: 621529
Description: Enables zinc ion binding activity. Predicted to be involved in negative regulation of apoptotic process and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PTMS (parathymosin); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: zinc binding protein; zinc-binding 11.5 kDa protein; ZnBP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,408,647 - 159,412,837 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,408,649 - 159,415,212 (-)EnsemblGRCr8
mRatBN7.24157,722,384 - 157,726,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,722,386 - 157,727,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,950,670 - 163,954,849 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,733,590 - 159,737,769 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,368,995 - 158,373,192 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,435,371 - 157,439,507 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,435,373 - 157,439,507 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,453,139 - 224,457,327 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44161,041,242 - 161,045,145 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,459,663 - 146,463,891 (-)NCBICelera
RGSC_v3.14161,286,177 - 161,290,081 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
ampicillin  (ISO)
atrazine  (ISO)
benzbromarone  (EXP)
benzene  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP)
butan-1-ol  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
chlordecone  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (EXP)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead diacetate  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
methylmercury(1+)  (EXP)
monosodium L-glutamate  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
omeprazole  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quinolin-8-ol  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Key enzymes of carbohydrate metabolism as targets of the 11.5-kDa Zn(2+)-binding protein (parathymosin). Brand IA and Heinickel A, J Biol Chem. 1991 Nov 5;266(31):20984-9.
2. Prothymosin alpha and parathymosin: amino acid sequences deduced from the cloned rat spleen cDNAs. Frangou-Lazaridis M, etal., Arch Biochem Biophys 1988 Jun;263(2):305-10.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Cloning and characterisation of a gene encoding the 11.5 kDa zinc-binding protein (parathymosin-alpha). Trompeter HI and Soling HD, FEBS Lett 1992 Feb 24;298(2-3):245-8.
9. The primary sequence of the PFK-1 inactivating zinc-binding protein as deduced from cDNA sequencing. Identity of the zinc-binding protein with rat parathymosin. Trompeter HI, etal., FEBS Lett 1989 Aug 14;253(1-2):63-6.
Additional References at PubMed
PMID:3421960   PMID:3456585   PMID:3856246   PMID:8889548   PMID:12477932   PMID:25002582   PMID:25943107  


Genomics

Comparative Map Data
Ptms
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,408,647 - 159,412,837 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,408,649 - 159,415,212 (-)EnsemblGRCr8
mRatBN7.24157,722,384 - 157,726,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,722,386 - 157,727,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,950,670 - 163,954,849 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,733,590 - 159,737,769 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,368,995 - 158,373,192 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,435,371 - 157,439,507 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,435,373 - 157,439,507 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,453,139 - 224,457,327 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44161,041,242 - 161,045,145 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,459,663 - 146,463,891 (-)NCBICelera
RGSC_v3.14161,286,177 - 161,290,081 (-)NCBI
Cytogenetic Map4q42NCBI
PTMS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,766,363 - 6,770,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,765,516 - 6,770,952 (+)Ensemblhg38GRCh38
GRCh37126,875,529 - 6,880,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,745,802 - 6,750,379 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34126,745,801 - 6,750,379NCBI
Celera128,492,838 - 8,497,415 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,729,242 - 6,733,455 (+)NCBIHuRef
CHM1_1126,874,519 - 6,879,106 (+)NCBICHM1_1
T2T-CHM13v2.0126,775,928 - 6,780,518 (+)NCBIT2T-CHM13v2.0
Ptms
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,890,638 - 124,894,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,890,644 - 124,897,066 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386124,913,675 - 124,917,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,913,681 - 124,920,103 (-)Ensemblmm10GRCm38
MGSCv376124,863,693 - 124,867,964 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366124,879,300 - 124,883,550 (-)NCBIMGSCv36mm8
Celera6126,589,942 - 126,594,397 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Ptms
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,376,955 - 4,377,759 (+)Ensembl
ChiLan1.0NW_0049554134,376,955 - 4,378,253 (+)NCBIChiLan1.0ChiLan1.0
PTMS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,328,728 - 12,333,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,325,525 - 12,330,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,897,502 - 6,902,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,810,493 - 6,815,611 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,814,264 - 6,815,101 (+)EnsemblpanPan2panpan1.1
PTMS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,268,296 - 38,284,921 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,343,963 - 8,348,328 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02738,620,956 - 38,625,320 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,620,978 - 38,625,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,494,931 - 38,499,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,536,172 - 38,540,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,823,193 - 7,827,558 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,381,897 - 102,384,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,049,964 - 1,050,769 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,049,455 - 1,050,892 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTMS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,937,092 - 63,942,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,371,522 - 66,376,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTMS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,803,143 - 6,807,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,415,987 - 1,420,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptms
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,450,661 - 3,454,018 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248603,450,504 - 3,454,494 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ptms
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1622,957,471 - 22,974,109 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ptms
18 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:301
Count of miRNA genes:165
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000022209
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
BI278054  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,722,393 - 157,722,606 (+)MAPPERmRatBN7.2
Rnor_6.04157,435,381 - 157,435,593NCBIRnor6.0
Rnor_5.04224,453,149 - 224,453,361UniSTSRnor5.0
RGSC_v3.44161,041,243 - 161,041,455UniSTSRGSC3.4
Celera4146,459,673 - 146,459,885UniSTS
RH 3.4 Map41001.7UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000081802   ⟹   ENSRNOP00000069993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,408,649 - 159,413,406 (-)Ensembl
mRatBN7.2 Ensembl4157,722,386 - 157,727,009 (-)Ensembl
Rnor_6.0 Ensembl4157,435,373 - 157,439,507 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152792   ⟹   ENSRNOP00000111402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,408,649 - 159,415,212 (-)Ensembl
RefSeq Acc Id: NM_031975   ⟹   NP_114181
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,408,647 - 159,412,837 (-)NCBI
mRatBN7.24157,722,384 - 157,726,575 (-)NCBI
Rnor_6.04157,435,371 - 157,439,507 (-)NCBI
Rnor_5.04224,453,139 - 224,457,327 (-)NCBI
RGSC_v3.44161,041,242 - 161,045,145 (-)RGD
Celera4146,459,663 - 146,463,891 (-)NCBI
Sequence:
RefSeq Acc Id: NP_114181   ⟸   NM_031975
- UniProtKB: P04550 (UniProtKB/Swiss-Prot),   B3DM95 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069993   ⟸   ENSRNOT00000081802
Ensembl Acc Id: ENSRNOP00000111402   ⟸   ENSRNOT00000152792

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P04550-F1-model_v2 AlphaFold P04550 1-102 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693397
Promoter ID:EPDNEW_R3921
Type:multiple initiation site
Name:Ptms_1
Description:parathymosin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,439,511 - 157,439,571EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621529 AgrOrtholog
BioCyc Gene G2FUF-43054 BioCyc
Ensembl Genes ENSRNOG00000060098 Ensembl
IMAGE_CLONE IMAGE:7371571 IMAGE-MGC_LOAD
InterPro Pro/parathymosin UniProtKB/Swiss-Prot
KEGG Report rno:83801 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187356 IMAGE-MGC_LOAD
NCBI Gene 83801 ENTREZGENE
PANTHER PARATHYMOSIN UniProtKB/Swiss-Prot
  PTHR22745 UniProtKB/Swiss-Prot
Pfam Prothymosin UniProtKB/Swiss-Prot
PhenoGen Ptms PhenoGen
RatGTEx ENSRNOG00000060098 RatGTEx
UniProt A0A8L2R1R3_RAT UniProtKB/TrEMBL
  A0ABK0M0H3_RAT UniProtKB/TrEMBL
  A6ILN0_RAT UniProtKB/TrEMBL
  A6ILN1_RAT UniProtKB/TrEMBL
  B3DM95 ENTREZGENE, UniProtKB/TrEMBL
  P04550 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Ptms  parathymosin      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Ptms  parathymosin      Symbol and Name status set to provisional 70820 PROVISIONAL