Advanced Search (OLGA)

Gene: Slc44a1 (solute carrier family 44 member 1) Rattus norvegicus

Analyze

Symbol:

Slc44a1

Name:

solute carrier family 44 member 1

RGD ID:

621426

Description:

Enables choline transmembrane transporter activity. Involved in choline transport and transmembrane transport. Predicted to be located in cytosol and mitochondrial outer membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human SLC44A1 (solute carrier family 44 member 1); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cdw92; CDW92 antigen; choline transporter-like protein 1; Ctl1; solute carrier family 44 (choline transporter), member 1; solute carrier family 44, member 1; transporter-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	72,857,323 - 73,037,279 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	72,858,759 - 73,037,279 (+)	Ensembl				GRCr8
mRatBN7.2	5	68,061,941 - 68,241,912 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	68,063,618 - 68,241,909 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	69,950,696 - 70,129,475 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	71,770,988 - 71,949,352 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	71,739,507 - 71,918,288 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	70,243,643 - 70,424,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	70,245,843 - 70,424,112 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	74,404,993 - 74,582,694 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	70,877,553 - 71,056,112 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	66,958,117 - 67,136,227 (+)	NCBI		Celera
RGSC_v3.1	5	70,882,673 - 71,061,224 (+)	NCBI
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Childhood-onset Neurodegeneration with Ataxia, Tremor, Optic Atrophy, and Cognitive Decline (ISO)

high grade glioma (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2-bromohexadecanoic acid (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

clofibrate (ISO)

cobalt dichloride (EXP,ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

disulfiram (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

gentamycin (EXP)

glafenine (EXP)

indometacin (ISO)

inulin (ISO)

irinotecan (EXP)

isobutanol (ISO)

methapyrilene (EXP)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

nitrates (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

Soman (EXP)

succimer (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (IBA,IEA,IMP,ISO,ISS)

ethanolamine transport (IEA,ISO,ISS)

organic cation transport (IEA)

transmembrane transport (IBA,IEA,IMP,ISO)

Cellular Component

cytosol (IEA,ISO)

membrane (IEA,ISO)

mitochondrial outer membrane (IEA,ISO,ISS)

mitochondrion (IEA,ISO)

plasma membrane (IBA,IEA,ISO,ISS)

Molecular Function

antiporter activity (IEA)

choline transmembrane transporter activity (IBA,IEA,IMP,ISO,ISS)

ethanolamine transmembrane transporter activity (IEA,ISO,ISS)

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Detection of choline transporter-like 1 protein CTL1 in neuroblastoma x glioma cells and in the CNS, and its role in choline uptake.	Machová E, etal., J Neurochem. 2009 Aug;110(4):1297-309. doi: 10.1111/j.1471-4159.2009.06218.x. Epub 2009 Jun 10.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	An electric lobe suppressor for a yeast choline transport mutation belongs to a new family of transporter-like proteins.	O'Regan S, etal., Proc Natl Acad Sci U S A 2000 Feb 15;97(4):1835-40.
5.	Papillary glioneuronal tumors: histological and molecular characteristics and diagnostic value of SLC44A1-PRKCA fusion.	Pages M, etal., Acta Neuropathol Commun. 2015 Dec 15;3:85. doi: 10.1186/s40478-015-0264-5.
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12007839	PMID:15474312	PMID:15691711	PMID:15715662	PMID:16000150	PMID:16319125	PMID:17520363	PMID:19056867	PMID:19246089	PMID:19946888	PMID:20410607
PMID:20458337	PMID:21185344	PMID:26746385	PMID:28119456	PMID:30776907

Genomics

Comparative Map Data

Slc44a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	72,857,323 - 73,037,279 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	72,858,759 - 73,037,279 (+)	Ensembl				GRCr8
mRatBN7.2	5	68,061,941 - 68,241,912 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	68,063,618 - 68,241,909 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	69,950,696 - 70,129,475 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	71,770,988 - 71,949,352 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	71,739,507 - 71,918,288 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	70,243,643 - 70,424,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	70,245,843 - 70,424,112 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	74,404,993 - 74,582,694 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	70,877,553 - 71,056,112 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	66,958,117 - 67,136,227 (+)	NCBI		Celera
RGSC_v3.1	5	70,882,673 - 71,061,224 (+)	NCBI
Cytogenetic Map	5	q24	NCBI

SLC44A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	105,244,651 - 105,438,504 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	105,244,536 - 105,439,171 (+)	Ensembl			hg38	GRCh38
GRCh37	9	108,006,932 - 108,200,785 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	107,046,750 - 107,193,503 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	105,086,662 - 105,233,235	NCBI
Celera	9	78,512,264 - 78,659,033 (+)	NCBI		Celera
Cytogenetic Map	9	q31.1-q31.2	NCBI
HuRef	9	77,662,832 - 77,755,005 (+)	NCBI		HuRef
CHM1_1	9	108,153,858 - 108,300,587 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	117,419,258 - 117,613,150 (+)	NCBI		T2T-CHM13v2.0

Slc44a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	53,440,387 - 53,622,478 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	53,440,413 - 53,622,478 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	53,440,387 - 53,622,478 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	53,440,413 - 53,622,478 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	53,453,285 - 53,635,350 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	53,461,757 - 53,643,578 (+)	NCBI		MGSCv36	mm8
Celera	4	53,407,313 - 53,583,394 (+)	NCBI		Celera
Cytogenetic Map	4	B2	NCBI
cM Map	4	28.66	NCBI

Slc44a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	21,092,380 - 21,231,070 (-)	Ensembl
ChiLan1.0	NW_004955419	21,092,583 - 21,277,294 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC44A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	33,946,592 - 34,140,946 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	33,948,960 - 34,143,295 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	76,417,869 - 76,612,233 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	104,599,572 - 104,737,620 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	104,597,755 - 104,737,620 (+)	Ensembl			panPan2	panpan1.1

SLC44A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	61,120,858 - 61,313,250 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	61,120,176 - 61,312,590 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	59,582,008 - 59,773,782 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	62,256,080 - 62,448,662 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	62,256,143 - 62,448,667 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	60,775,818 - 60,926,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	60,794,294 - 60,986,332 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	61,487,297 - 61,679,198 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc44a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	176,322,852 - 176,499,812 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	6,818,459 - 6,904,139 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	6,766,307 - 6,903,286 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC44A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	246,548,497 - 246,760,514 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	246,548,461 - 246,760,527 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	276,190,887 - 276,354,123 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC44A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	34,068,642 - 34,261,635 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	34,067,318 - 34,261,402 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666035	8,378,802 - 8,572,470 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc44a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	5,960,094 - 6,151,653 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	5,963,281 - 6,152,870 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc44a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	97,219,802 - 97,346,586 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc44a1
1299 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	92
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000024229, ENSRNOT00000024354
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	69474415	114474415	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	69835120	114835120	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

D5Rat141

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	72,866,798 - 72,866,933 (+)	Marker Load Pipeline
mRatBN7.2	5	68,071,418 - 68,071,553 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,253,642 - 70,253,776	NCBI	Rnor6.0
Rnor_5.0	5	74,412,792 - 74,412,926	UniSTS	Rnor5.0
RGSC_v3.4	5	70,885,352 - 70,885,486	UniSTS	RGSC3.4
RGSC_v3.4	5	70,885,351 - 70,885,486	RGD	RGSC3.4
Celera	5	66,966,154 - 66,966,288	UniSTS
RGSC_v3.1	5	70,890,464 - 70,890,599	RGD
SHRSP x BN Map	5	39.5399	RGD
SHRSP x BN Map	5	39.5399	UniSTS
Cytogenetic Map	5	q24	UniSTS

D5Mco17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	73,023,377 - 73,023,541 (+)	Marker Load Pipeline
mRatBN7.2	5	68,228,009 - 68,228,173 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,410,210 - 70,410,373	NCBI	Rnor6.0
Rnor_5.0	5	74,568,834 - 74,568,997	UniSTS	Rnor5.0
RGSC_v3.4	5	71,042,314 - 71,042,477	UniSTS	RGSC3.4
RGSC_v3.4	5	71,042,313 - 71,042,477	RGD	RGSC3.4
Celera	5	67,122,328 - 67,122,489	UniSTS
RGSC_v3.1	5	71,047,426 - 71,047,590	RGD
Cytogenetic Map	5	q24	UniSTS

RH140808

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,194,392 - 68,194,603 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,376,596 - 70,376,806	NCBI	Rnor6.0
Rnor_5.0	5	74,535,403 - 74,535,613	UniSTS	Rnor5.0
RGSC_v3.4	5	71,008,670 - 71,008,880	UniSTS	RGSC3.4
Celera	5	67,088,751 - 67,088,961	UniSTS
RH 3.4 Map	5	466.9	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH133659

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,103,362 - 68,103,550 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,285,582 - 70,285,769	NCBI	Rnor6.0
Rnor_5.0	5	74,444,732 - 74,444,919	UniSTS	Rnor5.0
RGSC_v3.4	5	70,917,292 - 70,917,479	UniSTS	RGSC3.4
Celera	5	66,997,939 - 66,998,126	UniSTS
RH 3.4 Map	5	451.2	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH133714

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,241,651 - 68,241,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,423,855 - 70,424,045	NCBI	Rnor6.0
Rnor_5.0	5	74,582,434 - 74,582,624	UniSTS	Rnor5.0
RGSC_v3.4	5	71,055,852 - 71,056,042	UniSTS	RGSC3.4
Celera	5	67,135,967 - 67,136,157	UniSTS
RH 3.4 Map	5	466.8	UniSTS
Cytogenetic Map	5	q24	UniSTS

BE103193

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,139,564 - 68,139,743 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,321,777 - 70,321,955	NCBI	Rnor6.0
Rnor_5.0	5	74,480,927 - 74,481,105	UniSTS	Rnor5.0
RGSC_v3.4	5	70,953,487 - 70,953,665	UniSTS	RGSC3.4
Celera	5	67,034,142 - 67,034,320	UniSTS
RH 3.4 Map	5	451.2	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH137710

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,146,986 - 68,147,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,329,199 - 70,329,444	NCBI	Rnor6.0
Rnor_5.0	5	74,488,349 - 74,488,594	UniSTS	Rnor5.0
RGSC_v3.4	5	70,960,909 - 70,961,154	UniSTS	RGSC3.4
Celera	5	67,041,564 - 67,041,809	UniSTS
RH 3.4 Map	5	466.8	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH138567

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,062,820 - 68,062,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,245,072 - 70,245,193	NCBI	Rnor6.0
Rnor_5.0	5	74,404,412 - 74,404,533	UniSTS	Rnor5.0
Celera	5	66,957,289 - 66,957,410	UniSTS
RH 3.4 Map	5	459.5	UniSTS
Cytogenetic Map	5	q24	UniSTS

AI137096

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	72,986,109 - 72,986,327 (+)	Marker Load Pipeline
mRatBN7.2	5	68,190,738 - 68,190,956 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,372,942 - 70,373,159	NCBI	Rnor6.0
Rnor_5.0	5	74,531,749 - 74,531,966	UniSTS	Rnor5.0
RGSC_v3.4	5	71,005,015 - 71,005,232	UniSTS	RGSC3.4
Celera	5	67,085,097 - 67,085,314	UniSTS
RH 3.4 Map	5	451.3	UniSTS
Cytogenetic Map	5	q24	UniSTS

CDW92_9350

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,191,374 - 68,192,098 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,373,578 - 70,374,301	NCBI	Rnor6.0
Rnor_5.0	5	74,532,385 - 74,533,108	UniSTS	Rnor5.0
RGSC_v3.4	5	71,005,651 - 71,006,374	UniSTS	RGSC3.4
Celera	5	67,085,733 - 67,086,456	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH79975

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	68,190,850 - 68,191,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	70,373,054 - 70,373,260	NCBI	Rnor6.0
Rnor_5.0	5	74,531,861 - 74,532,067	UniSTS	Rnor5.0
RGSC_v3.4	5	71,005,127 - 71,005,333	UniSTS	RGSC3.4
Celera	5	67,085,209 - 67,085,415	UniSTS
Cytogenetic Map	5	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ245619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ420809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM391692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000082108 ⟹ ENSRNOP00000074317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	72,858,762 - 73,037,268 (+)	Ensembl
mRatBN7.2 Ensembl	5	68,063,618 - 68,241,909 (+)	Ensembl
Rnor_6.0 Ensembl	5	70,245,843 - 70,424,112 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083983 ⟹ ENSRNOP00000071535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	72,858,759 - 72,987,425 (+)	Ensembl
mRatBN7.2 Ensembl	5	68,063,618 - 68,192,198 (+)	Ensembl
Rnor_6.0 Ensembl	5	70,245,843 - 70,374,401 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097567 ⟹ ENSRNOP00000089361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	72,905,129 - 72,983,014 (+)	Ensembl
mRatBN7.2 Ensembl	5	68,109,753 - 68,187,643 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109054 ⟹ ENSRNOP00000087119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	72,905,129 - 72,983,405 (+)	Ensembl
mRatBN7.2 Ensembl	5	68,109,753 - 68,188,034 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128642 ⟹ ENSRNOP00000099867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	72,858,759 - 73,037,279 (+)	Ensembl

RefSeq Acc Id:

NM_001033852 ⟹ NP_001029024

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,859,000 - 72,987,569 (+)	NCBI
mRatBN7.2	5	68,063,618 - 68,192,198 (+)	NCBI
Rnor_6.0	5	70,245,843 - 70,374,401 (+)	NCBI
Rnor_5.0	5	74,404,993 - 74,582,694 (+)	NCBI
RGSC_v3.4	5	70,877,553 - 71,056,112 (+)	RGD
Celera	5	66,958,117 - 67,086,556 (+)	NCBI

Sequence:

show sequence

CTCCGGCCCCGCCATGGGCTGCTGCAGCTCCGCCTCCGCCGCGCAGAGCTCCAAACGAGAATGG
AAGCCGTTGGAGGACCGTAGCTGCACAGACATACCATGGCTGCTGCTCTTCGTTCTGTTCTGCA
TTGGGATGGGATTTATTTGTGGCTTTTCAGTAGCAACAGGTGCAGCAGCAAGACTAGTGTCAGG
ATACGACAGCTATGGAAATATCTGTGGGCAGAGAAATGCAAAACTGGAAGCAATAGCGAACAGT
GGCCTGGACCACACCCACCGGAAGTATGTGTTCTTTTTGGACCCATGCAATCTGGACTTGATAA
ACAGGAAGATCAAGTCTATGGCACTGTGTGTAGCGGCATGTCCACGACAGGAGTTGAAAACCCT
GAGTGACGTCCAGAAGTTTGCCGAGATCAATGGTTCAGCACTGTGTAGCTACAACATAAAGCCT
TCCGAGTACACTCTGACTGCAAAATCCTCTGCCTTTTGCCCCAAACTACCAGTACCAGCCAGTG
CACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGCAGA
GGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACC
AGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCTGTCCATGATTTTGATGGTGA
TTATCCGGTATATCTCAAGAGTGCTAGTGTGGATCCTAACGATTCTGGTCATCCTGGGTTCACT
AGGTGGCACCGGTGTACTATGGTGGCTATATGCAAAGCAGAGAAGGTCCCCCAAAGAAACAGTT
ATTCCTGAACAGCTTCAGATCGCGGAAGACAATCTGCGGGCGCTCCTCATCTATGCCATTTCTG
CTACGGTGTTCACTGTCATTCTCTTCCTGATCATGCTGGTTATGCGTAAACGCGTCGCTCTCAC
CATCGCCTTGTTCCACGTGGCTGGCAAGGTCTTCATACACCTGCCTCTGCTAGTCTTCCAGCCC
TTCTGGACTTTTTTTGCTCTCGTCTTATTTTGGGCATACTGGATAATGACACTTCTCTTCCTTG
GCACTACTGGCAGTGCTGTTCAGAATGAACAAGGTTTCGTGGAGTACAAAATCTCTGGGCCTTT
GCAGTACATGTGGTGGTACCACGTGGTCGGCCTGATTTGGATCAGTGAGTTCATTCTCGCCTGT
CAGCAGATGACTGTGGCAGGAGCTGTGGTAACATACTACTTTACAAGGGATAAACGGAATTTGC
CTTTCACACCTATTCTGGCATCAGTGAACCGCCTTATTCGTTACCACCTCGGTACTGTGGCCAA
AGGATCCTTCATTATCACCCTCGTCAAGATCCCCAGGATGATCCTTATGTATATCCACAGTCAG
CTCAAAGGGAAGGAAAACGCTTGTGCACGATGCATGCTGAAATCCTGCATTTGCTGCCTTTGGT
GTCTTGAAAAGTGCCTGAGCTACTTAAACCAGAATGCATACACAGCCACAGCCATCAATAGCAC
CAACTTCTGCACCTCAGCAAAGGATGCCTTCGTCATTCTAGTGGAGAATGCTCTGCGAGTGGCT
GCCATCAACACAGTGGGGGACTTCATGTTATTCCTAGGCAAGGTGCTGATAGTCTGCAGCACGG
GCCTGGCTGGGATTATGCTGCTCAACTACCAGCAAGATTACACAGTGTGGGTGCTGCCTCTCAT
CATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGTCCATTTACGAAATGGTAGTG
GATGTGTTGTTTTTGTGTTTTGCCATTGATACAAAATACAATGATGGGAGCCCAGGCCGAGAAT
TCTATATGGACAAAGTCCTAATGGAGTTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCTGG
TAAGGGAGGCGCCGCGGATGCCCGAGAGCTAAAGCCGATGGCTTCGGGAGCAAGTTCTGCTTGA
ACATAGCCGGCGGTTATGGACCCCATTGACATTCCAAAACAATATATACACATAACTATGTATT
TGTGTGTGTGGGTGTGTGTATATATGTATATGTATGTGTGTGTATATATATATATGTATATGTA
TATACACACACACACATAATCAGCCAAAATCAGAGAAAAGGAACAGGGATTTAATACCTTTTTT
ATGCTTATTTTTGTCAAACATGTACTCCTTTCATACGGGTGGCTTTTACAAGGCAACTTCCGTC
ATTTAATGTTTTCAATTGTAATTGTCTTAATGGAAATGTTAGATTCATATCTGATTAAAGTTTT
TAATAACTAGAGGAAATTTTAACTTTAGTTACTTAACCTAGATAAAAATTATTGTACCAAATCC
TTGTGTAAGTTTTTGCAGGGGTGATTTCCCTGGTGTATGTTTAAAACCAGTATCTCATTTTACG
GATGCATAAGTCCTAGTGTGTCAGACTAGGCATGTGCGTTCAGATAAATAAGAGATTTCTCCAG
TCTGTTTTCTCCAATCCAAGAAGCCATGCCATTTTTCTTTGAGAAGCATGTGAGTGGGCCCACC
GTGGGAAATTTCATAATAGCTCATGCATTTGTCAGCCAACATTCAAAAGTACCCAACTGCTCAG
GTATCTGTAGTTTACCCTAATGCTTCTGTAGAAGAAAGTAGGAAACAGAGAGGGAAAGGGGTAG
ATAGTCTTTATTATGCAAACTTTTTTCTTGTGTTTTGTTTCTTTCCTCTTTGATTTTTAGTAGC
ACCCGCCACACATCCATGTGCCTGATCTGAAAGGAGGCTGGGGCACCCAGCCAAGTGTAACCTT
TCTGTGTATTAATTTTCAGCCTAGGTAATTCTAGAAAGGATAAAAGAAGAAAGAAACAAGAAGC
ACGACGCACTGAGCATTCCAGTGCTCTGTTTCAGAGGCAGGTCAGGAGCTTAGGGTTAAACGGC
CATCTCTTCAAATGCTTGCTCTAAAGTCTGAACACACCGGCAGGTGCTCCACTCCTTGGTTATT
CCTCGTATCCAGAGTTCTACAGTGTTTCACTGAAGAACCGGTTGGTGTTGATCCTCAAGTGTGA
ATGTGCTTTATGTTTGGGGGTACGTTTGGGGTTTCTTGTTTTGCCGGGTTTTTTTTTTTTTTAT
TTCTAAAGCTTACCAGATATGAATGGCTAATATTCCATTGTTCTGCTTATTGTAATGGTGAATG
CTTTAAGAAAAAAAAAGTGTAATTTGCTAAGAATAATTCATGATCTGTTTATGCGATAACTCCT
TTTTGTTACAATTTTTTTAAAAAAAGCTATTTTTGTTAATGTAAAGTAAATATTTCAGAGCAAA
TTTTTTAAACTTATTGCACTAAATACAGGCTCTGTAAAAAAAAAAAAAAAAAGAAATTAAAAAA
AAAAAGCCTCAGCATTTATCATTCCATGGAAGGAAGATCTTTTGAAAGAAAGCATTGCCTATAG
AGGTAGATGTGAATTAGACTGGTGTTGTGGGGATTGCATACAATGTCCCGAGGGCTCAAGAAGC
AGCTGCTTGCTAATGTGCTTCCTTTCAAAGGGTTGGACCTTTAAATTGCTGCAAAAGGTAAATT
GTATTTTCTTTTTTAAGTACTGGTGTTCTTTAATCTAGCTAGGCTAAATTTTGCTAAATGCCTT
GGTTTCTTTTCAAAGCTCATGAATATTTCTGAACCTTCAGAGTATTTGCAATAAGAGTCTGGAT
TAAAACAACAGTAAACCACACACACACACACACACACACACACACACACACACACACAATTAAG
AGTGCATGTCTAAGCAGGATCTGGGAAGCCAGCATTGAGAAAGCATAGCTATTGTGAAATAATA
ATTCGCCAGAAATTACATCTAACATCTAGCGCTGCCAAATAGTGTCACTGTACTATTTTATATC
ATTCGAAATGGAATTCAATTCTGTAACTAACAACTGTCCTACTAGGTGAGAGAGAAAGATTATG
TGAGAAAATCAGAATACCATGTGATTTGTAGATTTGGGACGTTCAGAAACATTGGGAACTAAAT
TTAGAATGGGCCAAAGCCTGGAAGATGGGTCTCACACCAGAAGACATTCCAGGAGCTAGCCATT
TTAGGAGATGTCCCTCCAAAGTGTCGCGATGATGGCCTTGCACTTGGGAATCAGGTCCTGCTCA
CTTGGACATCCCTGCGTCATGGACTCTTGCTGCCCCCGTTCCATGTGCTCGCAATTCCAGCTAC
TGGAAGCCACCAGGAATGCTTTCTAATTATCATTTGCAACTAGAACTGTAATCAGAAAGAAAAT
TTGTATTTTTGTATAACTCGATTGTGTGCCATTTTATATAACAGGTCCTGTTTTACAAATAAAT
TTTGTTTTACTAACTTTGTGTTTAGAAATTATGCTCTATGTGTAACCATGTCATTTGAGTTCAA
TTAATTTCCAGGCTGTTTTCCCTGAATAAGTTTGTGTGCCACATAGTCATATGCAAGCATGCAT
ATCTATTCCATGGGTGCACACAGAGAG

hide sequence

RefSeq Acc Id:

NM_053492 ⟹ NP_445944

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,859,000 - 73,037,279 (+)	NCBI
mRatBN7.2	5	68,063,618 - 68,241,912 (+)	NCBI
Rnor_6.0	5	70,245,843 - 70,424,115 (+)	NCBI
Rnor_5.0	5	74,404,993 - 74,582,694 (+)	NCBI
RGSC_v3.4	5	70,877,553 - 71,056,112 (+)	RGD
Celera	5	66,958,117 - 67,136,227 (+)	RGD

Sequence:

show sequence

CTCCGGCCCCGCCATGGGCTGCTGCAGCTCCGCCTCCGCCGCGCAGAGCTCCAAACGAGAATGG
AAGCCGTTGGAGGACCGTAGCTGCACAGACATACCATGGCTGCTGCTCTTCGTTCTGTTCTGCA
TTGGGATGGGATTTATTTGTGGCTTTTCAGTAGCAACAGGTGCAGCAGCAAGACTAGTGTCAGG
ATACGACAGCTATGGAAATATCTGTGGGCAGAGAAATGCAAAACTGGAAGCAATAGCGAACAGT
GGCCTGGACCACACCCACCGGAAGTATGTGTTCTTTTTGGACCCATGCAATCTGGACTTGATAA
ACAGGAAGATCAAGTCTATGGCACTGTGTGTAGCGGCATGTCCACGACAGGAGTTGAAAACCCT
GAGTGACGTCCAGAAGTTTGCCGAGATCAATGGTTCAGCACTGTGTAGCTACAACATAAAGCCT
TCCGAGTACACTCTGACTGCAAAATCCTCTGCCTTTTGCCCCAAACTACCAGTACCAGCCAGTG
CACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGCAGA
GGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACC
AGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCTGTCCATGATTTTGATGGTGA
TTATCCGGTATATCTCAAGAGTGCTAGTGTGGATCCTAACGATTCTGGTCATCCTGGGTTCACT
AGGTGGCACCGGTGTACTATGGTGGCTATATGCAAAGCAGAGAAGGTCCCCCAAAGAAACAGTT
ATTCCTGAACAGCTTCAGATCGCGGAAGACAATCTGCGGGCGCTCCTCATCTATGCCATTTCTG
CTACGGTGTTCACTGTCATTCTCTTCCTGATCATGCTGGTTATGCGTAAACGCGTCGCTCTCAC
CATCGCCTTGTTCCACGTGGCTGGCAAGGTCTTCATACACCTGCCTCTGCTAGTCTTCCAGCCC
TTCTGGACTTTTTTTGCTCTCGTCTTATTTTGGGCATACTGGATAATGACACTTCTCTTCCTTG
GCACTACTGGCAGTGCTGTTCAGAATGAACAAGGTTTCGTGGAGTACAAAATCTCTGGGCCTTT
GCAGTACATGTGGTGGTACCACGTGGTCGGCCTGATTTGGATCAGTGAGTTCATTCTCGCCTGT
CAGCAGATGACTGTGGCAGGAGCTGTGGTAACATACTACTTTACAAGGGATAAACGGAATTTGC
CTTTCACACCTATTCTGGCATCAGTGAACCGCCTTATTCGTTACCACCTCGGTACTGTGGCCAA
AGGATCCTTCATTATCACCCTCGTCAAGATCCCCAGGATGATCCTTATGTATATCCACAGTCAG
CTCAAAGGGAAGGAAAACGCTTGTGCACGATGCATGCTGAAATCCTGCATTTGCTGCCTTTGGT
GTCTTGAAAAGTGCCTGAGCTACTTAAACCAGAATGCATACACAGCCACAGCCATCAATAGCAC
CAACTTCTGCACCTCAGCAAAGGATGCCTTCGTCATTCTAGTGGAGAATGCTCTGCGAGTGGCT
GCCATCAACACAGTGGGGGACTTCATGTTATTCCTAGGCAAGGTGCTGATAGTCTGCAGCACGG
GCCTGGCTGGGATTATGCTGCTCAACTACCAGCAAGATTACACAGTGTGGGTGCTGCCTCTCAT
CATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGTCCATTTACGAAATGGTAGTG
GATGTGTTGTTTTTGTGTTTTGCCATTGATACAAAATACAATGATGGGAGCCCAGGCCGAGAAT
TCTATATGGACAAAGTCCTAATGGAGTTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCTGG
TAAGGGAGGCGCCGCGGATGCCCGAGAGCTAAAGCCGATGCTCAGGAAAAGGTGACCTGTCTCT
GGGGACTGGAAGAATGGACTCAAAGGAGGCTGTTTACACAAGGCTCTCCCACTCACCAGCTGTT
GAGTTTGTGAGGAAGACAGGATCTTATTACTTCAATGGCCGCGATCAAGAAGGTTCTCCAACCA
TATACAGCCAAATGGATTTACTACCATGGGGCTGGCTAATTAATGATTAATGGGGCATTTGATA
GTAATCTGCCTTGCAGCCACATCCTCAAACTTCATGTTGCTTTCTCTTCTGGCCTTGTCATGTT
TGAGTCAAGCCCTGCTAGTGGGTGCTGGCTTGAAGTCAGAACTCACGGGGTGGGGGGGAATTCT
CTGCGCTCATCTGTCCTCTCTGACTCTGCTATTTATAGAGTCCACGTGGACTGCTAACTATTAC
TAGGGGCCTGCTGCATGCTAAGCACTGGGATGGGTGCCTGACATAATACTGAATCCTCACACGG
CCCTGTAAAGTTGCTTTGTATCGCTGACATTTTGACCATGATGAAATGAGATGCTCAGAGAGAT
CATGTGTTGTGGGTAAGATCACACAGTTGATAGGATCGGTATTCCAATTTCAGAGGCCCTCCAC
TATAACACTATGCTTTGCTCATTCTTGCTACAAAGATAACTGCCCTGTAGCATCCCTGTGTGGG
TATCACTCCCTGTCTCAAATTGGGGTGGGTATGGCGGTGTATGTGCATGGGAAGTGTCTTGGGG
GGAGGGTTGTAGAAGCACAGAGGAATCACAGAATTATTTTCTAAGCGAGATAACACTGTTTGTT
TATGGCCCATGGATCATATCTCCCTGTCCCCACCTATTTTTGTAAATAAAGTTTTATGGGAACA
CAACCACATCCTTTATAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008763716 ⟹ XP_008761938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,857,323 - 72,987,427 (+)	NCBI
mRatBN7.2	5	68,061,941 - 68,197,423 (+)	NCBI
Rnor_6.0	5	70,243,643 - 70,379,626 (+)	NCBI

Sequence:

show sequence

AGGGCCTCAGAGAGGAACATGAGGTTTGGAGGAACCAGTCATCCATACCCACAGACCCAGGAAA
CGAGCTCCAAACGAGAATGGAAGCCGTTGGAGGACCGTAGCTGCACAGACATACCATGGCTGCT
GCTCTTCGTTCTGTTCTGCATTGGGATGGGATTTATTTGTGGCTTTTCAGTAGCAACAGGTGCA
GCAGCAAGACTAGTGTCAGGATACGACAGCTATGGAAATATCTGTGGGCAGAGAAATGCAAAAC
TGGAAGCAATAGCGAACAGTGGCCTGGACCACACCCACCGGAAGTATGTGTTCTTTTTGGACCC
ATGCAATCTGGACTTGATAAACAGGAAGATCAAGTCTATGGCACTGTGTGTAGCGGCATGTCCA
CGACAGGAGTTGAAAACCCTGAGTGACGTCCAGAAGTTTGCCGAGATCAATGGTTCAGCACTGT
GTAGCTACAACATAAAGCCTTCCGAGTACACTCTGACTGCAAAATCCTCTGCCTTTTGCCCCAA
ACTACCAGTACCAGCCAGTGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCC
TGCTATGCCAAGTTTGCAGAGGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGC
TGATTAGTGGAGTAATGACCAGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCT
GTCCATGATTTTGATGGTGATTATCCGGTATATCTCAAGAGTGCTAGTGTGGATCCTAACGATT
CTGGTCATCCTGGGTTCACTAGGTGGCACCGGTGTACTATGGTGGCTATATGCAAAGCAGAGAA
GGTCCCCCAAAGAAACAGTTATTCCTGAACAGCTTCAGATCGCGGAAGACAATCTGCGGGCGCT
CCTCATCTATGCCATTTCTGCTACGGTGTTCACTGTCATTCTCTTCCTGATCATGCTGGTTATG
CGTAAACGCGTCGCTCTCACCATCGCCTTGTTCCACGTGGCTGGCAAGGTCTTCATACACCTGC
CTCTGCTAGTCTTCCAGCCCTTCTGGACTTTTTTTGCTCTCGTCTTATTTTGGGCATACTGGAT
AATGACACTTCTCTTCCTTGGCACTACTGGCAGTGCTGTTCAGAATGAACAAGGTTTCGTGGAG
TACAAAATCTCTGGGCCTTTGCAGTACATGTGGTGGTACCACGTGGTCGGCCTGATTTGGATCA
GTGAGTTCATTCTCGCCTGTCAGCAGATGACTGTGGCAGGAGCTGTGGTAACATACTACTTTAC
AAGGGATAAACGGAATTTGCCTTTCACACCTATTCTGGCATCAGTGAACCGCCTTATTCGTTAC
CACCTCGGTACTGTGGCCAAAGGATCCTTCATTATCACCCTCGTCAAGATCCCCAGGATGATCC
TTATGTATATCCACAGTCAGCTCAAAGGGAAGGAAAACGCTTGTGCACGATGCATGCTGAAATC
CTGCATTTGCTGCCTTTGGTGTCTTGAAAAGTGCCTGAGCTACTTAAACCAGAATGCATACACA
GCCACAGCCATCAATAGCACCAACTTCTGCACCTCAGCAAAGGATGCCTTCGTCATTCTAGTGG
AGAATGCTCTGCGAGTGGCTGCCATCAACACAGTGGGGGACTTCATGTTATTCCTAGGCAAGGT
GCTGATAGTCTGCAGCACGGGCCTGGCTGGGATTATGCTGCTCAACTACCAGCAAGATTACACA
GTGTGGGTGCTGCCTCTCATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGT
CCATTTACGAAATGGTAGTGGATGTGTTGTTTTTGTGTTTTGCCATTGATACAAAATACAATGA
TGGGAGCCCAGGCCGAGAATTCTATATGGACAAAGTCCTAATGGAGTTTGTGGAAAACAGTAGG
AAAGCAATGAAAGAAGCTGGTAAGGGAGGCGCCGCGGATGCCCGAGAGCTAAAGCCGATGGCTT
CGGGAGCAAGTTCTGCTTGAACATAGCCGGCGGTTATGGACCCCATTGACATTCCAAAACAATA
TATACACATAACTATGTATTTGTGTGTGTGGGTGTGTGTATATATGTATATGTATGTGTGTGTA
TATATATATATGTATATGTATATACACACACACACATAATCAGCCAAAATCAGAGAAAAGGAAC
AGGGATTTAATACCTTTTTTATGCTTATTTTTGTCAAACATGTACTCCTTTCATACGGGTGGCT
TTTACAAGGCAACTTCCGTCATTTAATGTTTTCAATTGTAATTGTCTTAATGGAAATGTTAGAT
TCATATCTGATTAAAGTTTTTAATAACTAGAGGAAATTTTAACTTTAGTTACTTAACCTAGATA
AAAATTATTGTACCAAATCCTTGTGTAAGTTTTTGCAGGGGTGATTTCCCTGGTGTATGTTTAA
AACCAGTATCTCATTTTACGGATGCATAAGTCCTAGTGTGTCAGACTAGGCATGTGCGTTCAGA
TAAATAAGAGATTTCTCCAGTCTGTTTTCTCCAATCCAAGAAGCCATGCCATTTTTCTTTGAGA
AGCATGTGAGTGGGCCCACCGTGGGAAATTTCATAATAGCTCATGCATTTGTCAGCCAACATTC
AAAAGTACCCAACTGCTCAGGTATCTGTAGTTTACCCTAATGCTTCTGTAGAAGAAAGTAGGAA
ACAGAGAGGGAAAGGGGTAGATAGTCTTTATTATGCAAACTTTTTTCTTGTGTTTTGTTTCTTT
CCTCTTTGATTTTTAGTAGCACCCGCCACACATCCATGTGCCTGATCTGAAAGGAGGCTGGGGC
ACCCAGCCAAGTGTAACCTTTCTGTGTATTAATTTTCAGCCTAGGTAATTCTAGAAAGGATAAA
AGAAGAAAGAAACAAGAAGCACGACGCACTGAGCATTCCAGTGCTCTGTTTCAGAGGCAGGTCA
GGAGCTTAGGGTTAAACGGCCATCTCTTCAAATGCTTGCTCTAAAGTCTGAACACACCGGCAGG
TGCTCCACTCCTTGGTTATTCCTCGTATCCAGAGTTCTACAGTGTTTCACTGAAGAACCGGTTG
GTGTTGATCCTCAAGTGTGAATGTGCTTTATGTTTGGGGGTACGTTTGGGGTTTCTTGTTTTGC
CGGGTTTTTTTTTTTTTTATTTCTAAAGCTTACCAGATATGAATGGCTAATATTCCATTGTTCT
GCTTATTGTAATGGTGAATGCTTTAAGAAAAAAAAAGTGTAATTTGCTAAGAATAATTCATGAT
CTGTTTATGCGATAACTCCTTTTTGTTACAATTTTTTTAAAAAAAGCTATTTTTGTTAATGTAA
AGTAAATATTTCAGAGCAAATTTTTTAAACTTATTGCACTAAATACAGGCTCTGTAAAAAAAAA
AAAAAAAAGAAATTAAAAAAAAAAAGCCTCAGCATTTATCATTCCATGGAAGGAAGATCTTTTG
AAAGAAAGCATTGCCTATAGAGGTAGATGTGAATTAGACTGGTGTTGTGGGGATTGCATACAAT
GTCCCGAGGGCTCAAGAAGCAGCTGCTTGCTAATGTGCTTCCTTTCAAAGGGTTGGACCTTTAA
ATTGCTGCAAAAGGTAAATTGTATTTTCTTTTTTAAGTACTGGTGTTCTTTAATCTAGCTAGGC
TAAATTTTGCTAAATGCCTTGGTTTCTTTTCAAAGCTCATGAATATTTCTGAACCTTCAGAGTA
TTTGCAATAAGAGTCTGGATTAAAACAACAGTAAACCACACACACACACACACACACACACACA
CACACACACACACAATTAAGAGTGCATGTCTAAGCAGGATCTGGGAAGCCAGCATTGAGAAAGC
ATAGCTATTGTGAAATAATAATTCGCCAGAAATTACATCTAACATCTAGCGCTGCCAAATAGTG
TCACTGTACTATTTTATATCATTCGAAATGGAATTCAATTCTGTAACTAACAACTGTCCTACTA
GGTGAGAGAGAAAGATTATGTGAGAAAATCAGAATACCATGTGATTTGTAGATTTGGGACGTTC
AGAAACATTGGGAACTAAATTTAGAATGGGCCAAAGCCTGGAAGATGGGTCTCACACCAGAAGA
CATTCCAGGAGCTAGCCATTTTAGGAGATGTCCCTCCAAAGTGTCGCGATGATGGCCTTGCACT
TGGGAATCAGGTCCTGCTCACTTGGACATCCCTGCGTCATGGACTCTTGCTGCCCCCGTTCCAT
GTGCTCGCAATTCCAGCTACTGGAAGCCACCAGGAATGCTTTCTAATTATCATTTGCAACTAGA
ACTGTAATCAGAAAGAAAATTTGTATTTTTGTATAACTCGATTGTGTGCCATTTTATATAACAG
GTCCTGTTTTACAAATAAATTTTGTTTTACTAACTTTGTGTTTAGAAATTATGCTCTATGTGTA
ACCATGTCATTTGAGTTCAATTAATTTCCAGGCTGTTTTCCCTGAATAAGTTTGTGTGCCACAT
AGTCATATGCAAGCATGCATATCTATTCCATGGGTGCACACAGAGAGATATTTGATGTATGGAA
TATCACTCTGCCCTGAGCTCCGTTCTTTGATTAATTCGAGAAAGCCTGGTGGAGGCTTCTTAGT
GATCCCTGGTTTCTGCTTGGGTGCTCCTGCTGCCTCTTCCATTCATTTGCAAGTCCCTCTCCTA
GCTATGGGCTTCCTGCCGTCCCCTCATCTGCACACTGCTTCCATCCTCTGCCCAAGTGAGAAGA
ATAGACCAAGAACAAAAATGATCTGTGAAGTCTGGACACCTGAATAACTTTATAAACCGTTTGC
TCTGTCTCATGGCTTCCTCCTTTTTTCCCCCCATGATGGTTTTTCCAGTACCACACTCAGGAGT
CTTGTCCCTGGAGTTAGGCTTGCGGTCACCTTTTATAAATGGTAGCGGTGTCCACCGTGCCACA
TGGTTTCTGCCACCAGATAATTAAGAGCCCCTGGTGCATGGTTTAGACCTCCTGGACGGCTGCT
TCAAGGATAAGTTGTCCTGTCACTGTAGTGTGGGAGGAAAAGGGTTAAATTCACTTCAGTGAGA
ATCAGTGAGTCCCATCTTCAACAACAGGCTTCCTGGTGCAATCATAAGAAACACTCAACAACTT
CGTGAGGGAACTGAGTTTGTATAATCCTTCGTGAATGAGCAGGACCCAACACAGGTTGTCCCAT
GAACCCATTTAATGCAATGGTTAATGTTTAGGGTCAATGTTTTGGTTTGAGCCTACAGACAATA
AAGTCCTAGCTGGATGCCACTTGAACAGCTTACCTCGCTTGGCTCTCGGCCTTCTCCAGTGGAA
GTACTTATTGAGTCTAATTTAAAAACATGCTTGAAATCAGTGTTTCCTTTGGTAGAGATGCTCT
TTTACTCTAAGAATCTTTTTCTTTCATGAAAGGCATTAGACTGATAACTGTAACCTCTGCCCAA
CACCATGGACCATGCTATCTGCCATCTAAGTGCATGCTGAAGATTCCACCCTGATAATGTGTGG
ATCCTTTTACCCTGGTCCTGGGTAGCTTTAAGCTTGAATCATAAATACCTCTCCCTCCTCAGAA
TAAGAGGGAATGCATGCTCCAGGCATCTGCAAGCCACATAGTGCTACCACCCCACTCCATCTCC
TGGCCTCAGACATCCCTGCCCTGCACCGTGACTGCTACTGAGTGCCCTTTTTCAGGAGGTTCCT
TGATGTTCAGAATAGCTTTGTAAAAGCAGCTTCAAACCCAGACCCATTGGTTTTGGCGACCTAT
ACATTTTATTTTATTTCTTATTTTTGGCTTCTCGTTTGAATCGGGGTTTCCAGTAGCCTTAACT
AGTCTCTGAGCCGTTTACTTCAAAAGGGTCTGTGAGCTTTCATCTTTTAATAAGCAAGTTCTGG
ACTGGGGTGGGAGGCATATAGTTCAGTGACAGGAGCAGCTGCCTTGCATTCACAGGGCCCATTA
CCACCCTTTCCCCCGCGAAAATATCAATGTCTGCTCAATATTGCTTTGTAGTGGCCACTTGGAA
AACAGACAGACAAACAAACCTCAGGAATCTGGAGGCTTCTCAGTGCAGGTGACACAGTTAATCT
CCGAATTCCTTTCATGCACTGCCTCTGACAGAGAGAAGCACTTGCCTACTACAGTTGTTAAGAT
GTGGTCTGTGAATATATATTAGAGAATTATGAGATCCTAAGTAAATGCATGAAGCGGATACTTG
CGTGTTCTATATTCATAGCACAGAATGACTTTTGCTTCAGATGCATATGCATGTAGCCGTGTAT
ATTATGGAATTCGGGTTGACCCTTTTGAAAAGTACACATTGTTCGTCTACAGTGGCTGCTTGCA
GAATTAGCTTGTCTTCATTTAGTGGCAGATGGTCCAGTTTTAGAAAAATCAGGATCTTTGAGTA
TGTCATGGGAAAGAAGTCTAAAGTTAGTAAACTTGAAAACAAAATTAAAACTCAATGCACTATA
TATGAAGAAAAGTTTGAAATAACACACTTTTCCCATCTGAATTTCATAAATCTGAGCTAATCTT
ATATTCCATATTTTAAGAGGACAATTTCAATTCAAAATTTAACAATTTTAAAAATACCTTTCTT
ACTGAAAACCCTAATGCAGGATTTTTAAAGCTTGTGACTTTTTGAGGAAAGCCTTTCTTCTCTA
CAGAGCTATTGTGTCTGTTCTTCCTCCCCATTTCAATTGCTTTGTTTGTGTAACAATAGACCAA
CCAGGATTGCATTTCACTCTTGCATGAACAATTGATCCTTTTGTAAATTACAAGTACAGGATTG
AGTTTAGTGTTTTCTAGGGGTTCATTGTTAGAGAATTATTCAACAGGTAAGAAATGATTAGGGA
CCCAACTATTACACTGGTCTCCAGTTTTAATACTCAGTTTTACAACCTAAATGATTTTATTCCG
GACCAGAAAGCTCCAAATTAAAAAAACAAAAAAAACAAAAAAACCCAAAAAGCAAACAACAACA
AAAAAAACAAAGCAAATCAAACAAACAAAGAAAACCCCAAGCATGTATTCATAATATAATCAAG
ATCTAGTTGATTATGAAAACATTGATTCATTTACACATGTTCCAGATGTTTTTCACTTTATTTG
GTGGTATCCACATTTAACATTTGAAACTCAGAAGCATATTTGAGTGACCATAGTATCCCTTTGT
TCTTATGGAAACTATGAACGGCCTCCCGGTGCAGCTCAGTGAGCATCTAAAATGTTACTAAAAG
CGGTCAGAGCTCCCACTAAACCATCCATGGGGATGATGCTAATCACCTCTGGCCTGAATCATTT
TTATAACAAAAACAGTATATGACTTAGTTCCAGGTTTGGAACTAGAAACCACCCTAGTGTAAAT
GGGCATATTAGATCATATCCTGTCTTGGTAATGATTTCCTACCTTGGAGTATGAGGTAGGGTGT
GCCCTGAGGGAATTTTTGGCAATGAACCAAATTATTAGCACTGGAGTGGAGTGCACTCTAAAAC
AGATTAAAAGGGCATCCTTGTAATTATCCATCTACCAAGACCCTTCGCTATTCTGATGGAGCTC
AGATAGGATGTGGGGCTTACTGTAACAGTATATAACTGTTAAAGTGCATCTGTCAACATGAGGA
GGAACTTGAAGGCAATGATAATGTGCTAAGGGACGTGGAGTGGGTGCATGACTTAATAAAACAA
AAATCCTAGCGCACAGCTGGAGCAACTGATGGCTGCAGTAAATGTTCATCCTTACCCAGCACAC
ACACATCAACCTGGGAAGTGTTGTCTGTTTATGATTTCCCCACCACCCTCCCACACACACACAC
ACAGGAGAAAGCAGGGGCAGAGCATTCTGCTGATAGATCTTCCTCCATTTTCCATGTCCACTTC
CTCATACTTTGAGGAAGCTCCAGGAGTCCTTCACTCCCACAGCTCACTCCTAGATATGCAGCAG
CTCTTCGGGACGGCTCTTTAGGCCCTTGGAAAAACAGGCAAGAGATCACTGAAGGTCTGATTCT
CGTGGATCTCAGTTCATAGTCAGATATCAAACCCCTGTATTGTCTGACTGAACAAAGGAGTAGA
AATCTATCTGGCAGGCCTCTATGTACCCCGAAGGCTAGAACAAACCTTCCAGAGCTACAAATGG
AGAGGGACTACTATAAGTTTGTATAACGGGTAGAGAAAAGGCCTCACAGTTTGTAACTTGATTG
GTTCACTTGTAATAGAAGCCTGTGGCTTAAAGGGAAATTTCTGACTTTGTCTCTGAACTTACCT
ATACATCCTGCTGGTTAGGAATAACATTTGTGCTAGCTGTTGCTGGAGAAACGGATTTTGAATC
CAGAGGTAAAAGTAATCTGTGAAAAGATTTGGAGAATATGTGCAGAGATAGAAGAGATTCCACG
AATACTCTATCAGCCTCTAAATCTTGTGATGACCCTCTTCGTTTACTGTGGGGTTGTCAGACCA
GGGCCTTCTTTGACCCAGAAATTGTATTAGAAATAGAGAGAGAGGTGTGGCCCGAGGTTTTAAG
TCAGGGACGACTTACCACTCTCCCTGGCCTTTGGGTCCTAGTACTTGGCTTAGAACTTCTTGAA
TTTTAATTTTCAAAGATGATCGTATGAACAAAGCTGGCTCTTTTACTGTGTCACTCTGTTGGTA
TGCTTCATTGATGCTTCCTGGTCCCTCCCATCCTCTATTGGTGTTAAGTAATTAGAAGACATTT
CAGTTTACCTCAGAATATTCAGAACCACTAAACACACGTCTACTAACTCTTGCATCTAATCAAG
TCAGTCTGTTCGGTTGTTAGCTGGTTGGATAACCAGACACAAGGGAGAACTCCACAACTGAGAA
ACAGGGAAGAGCATGGGACCATCTAACAAAGGGACAGAGGGTCTGGAAAACAACCAAAGACTAA
AAGCCTGTGTTTTGCAGATCAGTTATCTGTACTGTCTGGCCCAGCCCCCCATAACTTGAGTTTA
GGCTAGAACTAGTTCTGAAGACCGGCGGATACACTAGGGACCTGCTCTCACTGTCTCAGGCGGT
CTACACAGCCCATGTCCAGCCTAGCCATTGTCCTGGGTGGTGAGACCATAAACAGAGCATTCTA
ATGCCTTCCTGTCCTTTTGGTTTATTGTTATTGTTGGTTTGTTTGTTTGTTTGTTTGTTTTTGC
ATTTGTACCTATTTGCAGAGTGTTGAAATAAGTTGTTTATGTCACATCTTATCTCTTTTCATTA
AAAATAGAGGAACACAATTAAGCCTTCCATAGTTTGGGGGTCATCTGCCTTCCTGTTATTTTGG
ATTCTTTCTTGTTACGGTGTCATTACACTATGCATGTGAGGAAACAAACATGTAGGTGCTTGAA
CATGCCCCACAGATGCACTTGTAGCCCTGGTGTTTGTGACTGTCGTGACTAACACAGTGCAGAC
TTTACACACAGAGCGCTACACTCTGGCAGGACTTAAGAACTATGTATATTAAGGAATTCTCTTT
CTGGAGCAATCAACTCTTGCAGGCAGATGAACTGCCTGGAGCTCTGAATGGGATGGCTTTCCAT
CTGGCGTCAAAGTTCAGTGAGCTTATATGAAATGAAGCTTTGAAATGTTTTACCTGTGCAGAAA
TATGAATTAGAAACAAAAAAGTGCTGGTCTAATGCTAAGTTTTTTTCCTCTGTGTACGGACTCA
GTTGCCAGAATTATAATGAAAACTGTATTTTAGTCTAACAAATGTATAGAATTTTTTAATGTAA
TAAATAAAATTTTATAGGAAAGCA

hide sequence

RefSeq Acc Id:

XM_008763717 ⟹ XP_008761939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,857,323 - 73,037,277 (+)	NCBI
mRatBN7.2	5	68,061,941 - 68,241,910 (+)	NCBI
Rnor_6.0	5	70,243,643 - 70,424,113 (+)	NCBI

Sequence:

show sequence

AGGGCCTCAGAGAGGAACATGAGGTTTGGAGGAACCAGTCATCCATACCCACAGACCCAGGAAA
CGAGCTCCAAACGAGAATGGAAGCCGTTGGAGGACCGTAGCTGCACAGACATACCATGGCTGCT
GCTCTTCGTTCTGTTCTGCATTGGGATGGGATTTATTTGTGGCTTTTCAGTAGCAACAGGTGCA
GCAGCAAGACTAGTGTCAGGATACGACAGCTATGGAAATATCTGTGGGCAGAGAAATGCAAAAC
TGGAAGCAATAGCGAACAGTGGCCTGGACCACACCCACCGGAAGTATGTGTTCTTTTTGGACCC
ATGCAATCTGGACTTGATAAACAGGAAGATCAAGTCTATGGCACTGTGTGTAGCGGCATGTCCA
CGACAGGAGTTGAAAACCCTGAGTGACGTCCAGAAGTTTGCCGAGATCAATGGTTCAGCACTGT
GTAGCTACAACATAAAGCCTTCCGAGTACACTCTGACTGCAAAATCCTCTGCCTTTTGCCCCAA
ACTACCAGTACCAGCCAGTGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCC
TGCTATGCCAAGTTTGCAGAGGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGC
TGATTAGTGGAGTAATGACCAGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCT
GTCCATGATTTTGATGGTGATTATCCGGTATATCTCAAGAGTGCTAGTGTGGATCCTAACGATT
CTGGTCATCCTGGGTTCACTAGGTGGCACCGGTGTACTATGGTGGCTATATGCAAAGCAGAGAA
GGTCCCCCAAAGAAACAGTTATTCCTGAACAGCTTCAGATCGCGGAAGACAATCTGCGGGCGCT
CCTCATCTATGCCATTTCTGCTACGGTGTTCACTGTCATTCTCTTCCTGATCATGCTGGTTATG
CGTAAACGCGTCGCTCTCACCATCGCCTTGTTCCACGTGGCTGGCAAGGTCTTCATACACCTGC
CTCTGCTAGTCTTCCAGCCCTTCTGGACTTTTTTTGCTCTCGTCTTATTTTGGGCATACTGGAT
AATGACACTTCTCTTCCTTGGCACTACTGGCAGTGCTGTTCAGAATGAACAAGGTTTCGTGGAG
TACAAAATCTCTGGGCCTTTGCAGTACATGTGGTGGTACCACGTGGTCGGCCTGATTTGGATCA
GTGAGTTCATTCTCGCCTGTCAGCAGATGACTGTGGCAGGAGCTGTGGTAACATACTACTTTAC
AAGGGATAAACGGAATTTGCCTTTCACACCTATTCTGGCATCAGTGAACCGCCTTATTCGTTAC
CACCTCGGTACTGTGGCCAAAGGATCCTTCATTATCACCCTCGTCAAGATCCCCAGGATGATCC
TTATGTATATCCACAGTCAGCTCAAAGGGAAGGAAAACGCTTGTGCACGATGCATGCTGAAATC
CTGCATTTGCTGCCTTTGGTGTCTTGAAAAGTGCCTGAGCTACTTAAACCAGAATGCATACACA
GCCACAGCCATCAATAGCACCAACTTCTGCACCTCAGCAAAGGATGCCTTCGTCATTCTAGTGG
AGAATGCTCTGCGAGTGGCTGCCATCAACACAGTGGGGGACTTCATGTTATTCCTAGGCAAGGT
GCTGATAGTCTGCAGCACGGGCCTGGCTGGGATTATGCTGCTCAACTACCAGCAAGATTACACA
GTGTGGGTGCTGCCTCTCATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGT
CCATTTACGAAATGGTAGTGGATGTGTTGTTTTTGTGTTTTGCCATTGATACAAAATACAATGA
TGGGAGCCCAGGCCGAGAATTCTATATGGACAAAGTCCTAATGGAGTTTGTGGAAAACAGTAGG
AAAGCAATGAAAGAAGCTGGTAAGGGAGGCGCCGCGGATGCCCGAGAGCTAAAGCCGATGCTCA
GGAAAAGGTGACCTGTCTCTGGGGACTGGAAGAATGGACTCAAAGGAGGCTGTTTACACAAGGC
TCTCCCACTCACCAGCTGTTGAGTTTGTGAGGAAGACAGGATCTTATTACTTCAATGGCCGCGA
TCAAGAAGGTTCTCCAACCATATACAGCCAAATGGATTTACTACCATGGGGCTGGCTAATTAAT
GATTAATCAGGGGCATTTGATAGTAATCTGCCTTGCAGCCACATCCTCAAACTTCATGTTGCTT
TCTCTTCTGGCCTTGTCATGTTTGAGTCAAGCCCTGCTAGTGGGTGCTGGCTTGAAGTCAGAAC
TCACGGGGTGGGGGGGAATTCTCTGCGCTCATCTGTCCTCTCTGACTCTGCTATTTATAGAGTC
CACGTGGACTGCTAACTATTACTAGGGGCCTGCTGCATGCTAAGCACTGGGATGGGTGCCTGAC
ATAATACTGAATCCTCACACGGCCCTGTAAAGTTGCTTTGTATCGCTGACATTTTGACCATGAT
GAAATGAGATGCTCAGAGAGATCATGTGTTGTGGGTAAGATCACACAGTTGATAGGATCGGTAT
TCCAATTTCAGAGGCCCTCCACTATAACACTATGCTTTGCTCATTCTTGCTACAAAGATAACTG
CCCTGTAGCATCCCTGTGGGTATCACTCCCTGTCTCAAATTGGGGTGGGTATGGCGGTGTATGT
GCATGGGAAGTGTCTTGGGGGGAGGGTTGTAGAAGCACAGAGGAATCACAGAATTATTTTCTAA
GCGAGATAACACTGTTTGTTTATGGCCCATGGATCATATCTCCCTGTCCCCACCTATTTTTGTA
AATAAAGTTTTATGGGAACACAACCACATCCTTTA

hide sequence

RefSeq Acc Id:

XM_039110883 ⟹ XP_038966811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,857,323 - 72,985,108 (+)	NCBI
mRatBN7.2	5	68,061,941 - 68,189,627 (+)	NCBI

RefSeq Acc Id:

XM_039110884 ⟹ XP_038966812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,858,767 - 72,985,108 (+)	NCBI
mRatBN7.2	5	68,063,411 - 68,189,627 (+)	NCBI

RefSeq Acc Id:

XM_039110885 ⟹ XP_038966813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,934,620 - 72,987,427 (+)	NCBI
mRatBN7.2	5	68,139,247 - 68,197,423 (+)	NCBI

RefSeq Acc Id:

XM_039110886 ⟹ XP_038966814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	72,939,395 - 72,987,427 (+)	NCBI
mRatBN7.2	5	68,144,018 - 68,197,423 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001029024	(Get FASTA)	NCBI Sequence Viewer
	NP_445944	(Get FASTA)	NCBI Sequence Viewer
	XP_008761938	(Get FASTA)	NCBI Sequence Viewer
	XP_008761939	(Get FASTA)	NCBI Sequence Viewer
	XP_038966811	(Get FASTA)	NCBI Sequence Viewer
	XP_038966812	(Get FASTA)	NCBI Sequence Viewer
	XP_038966813	(Get FASTA)	NCBI Sequence Viewer
	XP_038966814	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAB75555	(Get FASTA)	NCBI Sequence Viewer
	CAD12728	(Get FASTA)	NCBI Sequence Viewer
	EDL91713	(Get FASTA)	NCBI Sequence Viewer
	EDL91714	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071535
	ENSRNOP00000074317
GenBank Protein	Q8VII6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_445944 ⟸ NM_053492
- Peptide Label:	isoform 2
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot), A0A0G2K7R8 (UniProtKB/TrEMBL), A6KDP1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSY GNICGQRNAKLEAIANSGLDHTHRKYVFFLDPCNLDLINRKIKSMALCVAACPRQELKTLSDVQ KFAEINGSALCSYNIKPSEYTLTAKSSAFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALIT FVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTG VLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALF HVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNEQGFVEYKISGPLQYMW WYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFI ITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAYTATAINSTNFCT SAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCL FAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGA ADARELKPMLRKR hide sequence

RefSeq Acc Id:	NP_001029024 ⟸ NM_001033852
- Peptide Label:	isoform 1
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot), A0A0G2K0P8 (UniProtKB/TrEMBL), A6KDP2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSY GNICGQRNAKLEAIANSGLDHTHRKYVFFLDPCNLDLINRKIKSMALCVAACPRQELKTLSDVQ KFAEINGSALCSYNIKPSEYTLTAKSSAFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALIT FVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTG VLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALF HVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNEQGFVEYKISGPLQYMW WYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFI ITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAYTATAINSTNFCT SAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCL FAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGA ADARELKPMASGASSA hide sequence

RefSeq Acc Id:	XP_008761939 ⟸ XM_008763717
- Peptide Label:	isoform X4
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRFGGTSHPYPQTQETSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVS GYDSYGNICGQRNAKLEAIANSGLDHTHRKYVFFLDPCNLDLINRKIKSMALCVAACPRQELKT LSDVQKFAEINGSALCSYNIKPSEYTLTAKSSAFCPKLPVPASAPIPFFHRCAPVNISCYAKFA EALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGS LGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVAL TIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNEQGFVEYKISGP LQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVA KGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAYTATAINS TNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPL IIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEA GKGGAADARELKPMLRKR hide sequence

RefSeq Acc Id:	XP_008761938 ⟸ XM_008763716
- Peptide Label:	isoform X3
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRFGGTSHPYPQTQETSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVS GYDSYGNICGQRNAKLEAIANSGLDHTHRKYVFFLDPCNLDLINRKIKSMALCVAACPRQELKT LSDVQKFAEINGSALCSYNIKPSEYTLTAKSSAFCPKLPVPASAPIPFFHRCAPVNISCYAKFA EALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGS LGGTGVLWWLYAKQRRSPKETVIPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVAL TIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNEQGFVEYKISGP LQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVA KGSFIITLVKIPRMILMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAYTATAINS TNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPL IIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEA GKGGAADARELKPMASGASSA hide sequence

Ensembl Acc Id:

ENSRNOP00000074317 ⟸ ENSRNOT00000082108

Ensembl Acc Id:

ENSRNOP00000071535 ⟸ ENSRNOT00000083983

RefSeq Acc Id:	XP_038966811 ⟸ XM_039110883
- Peptide Label:	isoform X1
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038966812 ⟸ XM_039110884
- Peptide Label:	isoform X2
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038966813 ⟸ XM_039110885
- Peptide Label:	isoform X5
- UniProtKB:	Q9JJZ7 (UniProtKB/Swiss-Prot), Q8VII6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038966814 ⟸ XM_039110886
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000087119 ⟸ ENSRNOT00000109054

Ensembl Acc Id:

ENSRNOP00000089361 ⟸ ENSRNOT00000097567

Ensembl Acc Id:

ENSRNOP00000099867 ⟸ ENSRNOT00000128642

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VII6-F1-model_v2	AlphaFold	Q8VII6	1-656	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693743

Promoter ID:

EPDNEW_R4268

Type:

single initiation site

Name:

Slc44a1_1

Description:

solute carrier family 44 member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	70,245,868 - 70,245,928	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621426	AgrOrtholog
BioCyc Gene	G2FUF-41272	BioCyc
Ensembl Genes	ENSRNOG00000055089	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000082108	ENTREZGENE
	ENSRNOT00000083983	ENTREZGENE
InterPro	Choline_transptr-like	UniProtKB/Swiss-Prot
KEGG Report	rno:85254	UniProtKB/Swiss-Prot
NCBI Gene	85254	ENTREZGENE
PANTHER	CHOLINE TRANSPORTER-LIKE PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR12385	UniProtKB/Swiss-Prot
Pfam	Choline_transpo	UniProtKB/Swiss-Prot
PhenoGen	Slc44a1	PhenoGen
RatGTEx	ENSRNOG00000055089	RatGTEx
UniProt	A0A0G2K0P8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K7R8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7E1_RAT	UniProtKB/TrEMBL
	A0A8I6A810_RAT	UniProtKB/TrEMBL
	A0ABK0KY65_RAT	UniProtKB/TrEMBL
	A6KDP1	ENTREZGENE, UniProtKB/TrEMBL
	A6KDP2	ENTREZGENE, UniProtKB/TrEMBL
	CTL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9JJZ7	ENTREZGENE
UniProt Secondary	Q9JJZ7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc44a1	solute carrier family 44 member 1	Slc44a1	solute carrier family 44 (choline transporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc44a1	solute carrier family 44 (choline transporter), member 1	Slc44a1	solute carrier family 44, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-20	Slc44a1	solute carrier family 44, member 1	Cdw92	CDW92 antigen	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Cdw92	CDW92 antigen	Ctl1	transporter-like protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Ctl1	transporter-like protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in the spinal cord, brain and colon	632580

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM