Rpl31 (ribosomal protein L31) - Rat Genome Database

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Gene: Rpl31 (ribosomal protein L31) Rattus norvegicus
Analyze
Symbol: Rpl31
Name: ribosomal protein L31
RGD ID: 621202
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in nucleoplasm. Part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L31; large ribosomal subunit protein eL31; MGC72834
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl31-ps10   Rpl31-ps13  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl949,142,955 - 49,147,155 (+)EnsemblGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,875,636 - 96,876,010 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)Ensemblrn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera939,396,969 - 39,400,454 (+)NCBICelera
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Cytogenetic Map9q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-bromohexadecanoic acid  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3'-diindolylmethane  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
curcumin  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
p-menthan-3-ol  (ISO)
panobinostat  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
pyrogallol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Sequence requirement for nucleolar localization of rat ribosomal protein L31. Quaye IK, etal., Eur J Cell Biol. 1996 Feb;69(2):151-5.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Nucleotide sequence of cloned cDNA specific for rat ribosomal protein L31. Tanaka T, etal., Eur J Biochem 1987 Jan 2;162(1):45-8.
9. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:15489334   PMID:16452087   PMID:19946888   PMID:20458337   PMID:21423176   PMID:22658674   PMID:23376485   PMID:24625528   PMID:24930395   PMID:25957688  
PMID:35352799  


Genomics

Comparative Map Data
Rpl31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl949,142,955 - 49,147,155 (+)EnsemblGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,875,636 - 96,876,010 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)Ensemblrn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera939,396,969 - 39,400,454 (+)NCBICelera
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Cytogenetic Map9q22NCBI
RPL31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,002,289 - 101,019,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,002,229 - 101,024,032 (+)Ensemblhg38GRCh38
GRCh372101,618,751 - 101,636,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,985,123 - 101,002,587 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342101,077,268 - 101,081,398NCBI
Celera295,822,605 - 95,840,060 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,382,734 - 95,400,192 (+)NCBIHuRef
CHM1_12101,623,013 - 101,640,477 (+)NCBICHM1_1
T2T-CHM13v2.02101,460,986 - 101,478,421 (+)NCBIT2T-CHM13v2.0
Rpl31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,406,987 - 39,410,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,406,923 - 39,410,992 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38139,367,851 - 39,371,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,367,842 - 39,371,911 (+)Ensemblmm10GRCm38
MGSCv37139,424,696 - 39,428,756 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36139,312,465 - 39,316,453 (+)NCBIMGSCv36mm8
Celera1592,888,049 - 92,888,542 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.3NCBI
Rpl31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554706,912,537 - 6,916,232 (+)Ensembl
ChiLan1.0NW_0049554706,912,109 - 6,916,232 (+)NCBIChiLan1.0ChiLan1.0
RPL31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,978,288 - 101,996,064 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)EnsemblpanPan2panpan1.1
RPL31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,400,195 - 29,400,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,478,127 - 86,482,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493666186,547 - 91,380 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493666186,834 - 91,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,281,339 - 53,295,304 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1353,289,993 - 53,295,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,836,226 - 55,841,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,710,622 - 4,714,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041172,330,229 - 172,335,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,795,872 - 5,800,410 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247495,795,374 - 5,800,410 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl31
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14115,609,246 - 115,613,285 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl31
36 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:96
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000033733
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
BE118306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2941,651,203 - 41,651,378 (+)MAPPERmRatBN7.2
Rnor_6.0946,090,762 - 46,090,936NCBIRnor6.0
Rnor_5.0945,778,674 - 45,778,848UniSTSRnor5.0
RGSC_v3.4938,443,234 - 38,443,408UniSTSRGSC3.4
Celera939,400,772 - 39,400,946UniSTS
RH 3.4 Map9386.4UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC062228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000033733   ⟹   ENSRNOP00000031078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl949,142,955 - 49,147,155 (+)Ensembl
mRatBN7.2 Ensembl941,647,426 - 41,651,439 (+)Ensembl
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106983   ⟹   ENSRNOP00000093678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)Ensembl
RefSeq Acc Id: NM_022506   ⟹   NP_071951
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8949,143,111 - 49,147,155 (+)NCBI
mRatBN7.2941,647,397 - 41,651,441 (+)NCBI
Rnor_6.0946,086,959 - 46,090,444 (+)NCBI
Rnor_5.0945,774,871 - 45,778,356 (+)NCBI
RGSC_v3.4938,439,431 - 38,442,916 (+)RGD
Celera939,396,969 - 39,400,454 (+)RGD
Sequence:
RefSeq Acc Id: XM_063267673   ⟹   XP_063123743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8949,143,044 - 49,146,601 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123743 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62228 (Get FASTA)   NCBI Sequence Viewer  
  CAA28500 (Get FASTA)   NCBI Sequence Viewer  
  EDL99201 (Get FASTA)   NCBI Sequence Viewer  
  EDL99202 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000031078.3
GenBank Protein P62902 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071951   ⟸   NM_022506
- UniProtKB: P62902 (UniProtKB/Swiss-Prot),   A6INL0 (UniProtKB/TrEMBL),   D3ZU04 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000031078   ⟸   ENSRNOT00000033733
Ensembl Acc Id: ENSRNOP00000093678   ⟸   ENSRNOT00000106983
RefSeq Acc Id: XP_063123743   ⟸   XM_063267673
- Peptide Label: isoform X1
- UniProtKB: A6INL2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62902-F1-model_v2 AlphaFold P62902 1-125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696624
Promoter ID:EPDNEW_R7148
Type:initiation region
Name:Rpl31_1
Description:ribosomal protein L31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0946,086,960 - 46,087,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621202 AgrOrtholog
BioCyc Gene G2FUF-27750 BioCyc
Ensembl Genes ENSRNOG00000013508 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000030296 Ensembl
Ensembl Transcript ENSRNOT00000033733.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.440.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6921741 IMAGE-MGC_LOAD
InterPro Ribosomal_L31e UniProtKB/Swiss-Prot
  Ribosomal_L31e_CS UniProtKB/Swiss-Prot
  Ribosomal_L31e_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:64298 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72834 IMAGE-MGC_LOAD
NCBI Gene 64298 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/Swiss-Prot
  PTHR10956 UniProtKB/Swiss-Prot
Pfam Ribosomal_L31e UniProtKB/Swiss-Prot
PhenoGen Rpl31 PhenoGen
PROSITE RIBOSOMAL_L31E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013508 RatGTEx
  ENSRNOG00000030296 RatGTEx
SMART Ribosomal_L31e UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54575 UniProtKB/Swiss-Prot
UniProt A6INL0 ENTREZGENE, UniProtKB/TrEMBL
  A6INL2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU04 ENTREZGENE, UniProtKB/TrEMBL
  P62902 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P12947 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl31  ribosomal protein L31      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl31  ribosomal protein L31      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 124 amino acids with a relative molecular mass of 14,331 634028