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Gene: Nup155 (nucleoporin 155) Rattus norvegicus

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Symbol:

Nup155

Name:

nucleoporin 155

RGD ID:

621199

Description:

Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport; protein localization to nuclear inner membrane; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within with a positive effect on miRNA processing and protein localization to nucleus. Predicted to act upstream of or within atrial cardiac muscle cell action potential; mRNA export from nucleus; and nuclear envelope organization. Located in nuclear envelope. Human ortholog(s) of this gene implicated in familial atrial fibrillation. Orthologous to human NUP155 (nucleoporin 155); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

155 kDa nucleoporin; nuclear pore complex protein Nup155; nucleoporin 155kD; nucleoporin Nup155; P140

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUP155 (nucleoporin 155)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Nup155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nup155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUP155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUP155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nup155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUP155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUP155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nup155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nup155 (nucleoporin 155)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NUP155 (nucleoporin 155)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nup155 (nucleoporin 155)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nup155 (nucleoporin 155)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NUP157	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nup154	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	npp-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NUP170	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nup155	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	58,927,171 - 58,980,162 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	58,928,537 - 58,981,242 (+)	Ensembl				GRCr8
mRatBN7.2	2	57,201,310 - 57,252,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	57,201,272 - 57,254,148 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	64,289,610 - 64,341,120 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	62,377,452 - 62,428,750 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	57,378,632 - 57,429,930 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	57,206,665 - 57,258,242 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	57,206,613 - 57,258,295 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	77,213,967 - 77,265,544 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	57,711,414 - 57,762,974 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	52,816,019 - 52,867,498 (+)	NCBI		Celera
RGSC_v3.1	2	57,639,646 - 57,691,207 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Atrial Fibrillation 15 (ISO)

primary ovarian insufficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (EXP)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bucladesine (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

medroxyprogesterone acetate (ISO)

methidathion (ISO)

methimazole (EXP)

oxaliplatin (EXP)

ozone (ISO)

PCB138 (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

tetrahydropalmatine (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triadimefon (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

atrial cardiac muscle cell action potential (ISO)

biological_process (ND)

miRNA processing (ISO)

mRNA export from nucleus (ISO)

mRNA transport (IEA)

nuclear envelope organization (ISO)

nucleocytoplasmic transport (IEA)

protein import into nucleus (IBA,ISO)

protein localization to nuclear inner membrane (IBA)

protein localization to nucleus (ISO)

protein transport (IEA)

RNA export from nucleus (IBA)

transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (IBA)

Cellular Component

nuclear envelope (IDA,IEA,ISO)

nuclear membrane (IEA,ISO)

nuclear pore (IEA)

nuclear pore inner ring (IBA)

Molecular Function

protein binding (IPI,ISO)

structural constituent of nuclear pore (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Vertebrate Nup53 interacts with the nuclear lamina and is required for the assembly of a Nup93-containing complex.	Hawryluk-Gara LA, etal., Mol Biol Cell. 2005 May;16(5):2382-94. Epub 2005 Feb 9.
4.	Modulation of chromatin position and gene expression by HDAC4 interaction with nucleoporins.	Kehat I, etal., J Cell Biol. 2011 Apr 4;193(1):21-9. doi: 10.1083/jcb.201101046.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	Nup155 is a novel nuclear pore complex protein that contains neither repetitive sequence motifs nor reacts with WGA.	Radu A, etal., J Cell Biol 1993 Apr;121(1):1-9.
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12438562	PMID:19070573	PMID:19946888	PMID:22871113

Genomics

Comparative Map Data

Nup155
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	58,927,171 - 58,980,162 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	58,928,537 - 58,981,242 (+)	Ensembl				GRCr8
mRatBN7.2	2	57,201,310 - 57,252,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	57,201,272 - 57,254,148 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	64,289,610 - 64,341,120 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	62,377,452 - 62,428,750 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	57,378,632 - 57,429,930 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	57,206,665 - 57,258,242 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	57,206,613 - 57,258,295 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	77,213,967 - 77,265,544 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	57,711,414 - 57,762,974 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	52,816,019 - 52,867,498 (+)	NCBI		Celera
RGSC_v3.1	2	57,639,646 - 57,691,207 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

NUP155
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	37,288,137 - 37,371,106 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	37,288,137 - 37,371,140 (-)	Ensembl			hg38	GRCh38
GRCh37	5	37,288,239 - 37,371,208 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	37,327,698 - 37,406,954 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	37,327,697 - 37,406,954	NCBI
Celera	5	37,178,878 - 37,258,122 (-)	NCBI		Celera
Cytogenetic Map	5	p13.2	NCBI
HuRef	5	37,244,125 - 37,323,358 (-)	NCBI		HuRef
CHM1_1	5	37,294,516 - 37,374,012 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	37,537,942 - 37,620,915 (-)	NCBI		T2T-CHM13v2.0

Nup155
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	8,135,861 - 8,189,343 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	8,138,757 - 8,190,731 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	8,109,263 - 8,159,859 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	8,109,273 - 8,161,247 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	8,059,313 - 8,109,859 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	8,056,575 - 8,106,034 (+)	NCBI		MGSCv36	mm8
Celera	15	7,953,625 - 8,004,283 (+)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	3.82	NCBI

Nup155
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	21,997,208 - 22,057,205 (-)	Ensembl
ChiLan1.0	NW_004955426	21,997,208 - 22,057,205 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUP155
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	72,961,586 - 73,049,173 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	71,115,210 - 71,202,806 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	73,000,597 - 73,080,417 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	78,284,523 - 78,360,762 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	78,285,001 - 78,360,601 (+)	Ensembl			panPan2	panpan1.1

NUP155
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	71,340,109 - 71,409,286 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	71,340,168 - 71,408,038 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	70,949,814 - 71,020,167 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	71,849,218 - 71,919,625 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	71,849,260 - 71,918,554 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	71,597,052 - 71,665,228 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	71,717,004 - 71,785,588 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	72,250,039 - 72,318,205 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nup155
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	226,682,602 - 226,736,090 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	4,635,869 - 4,690,943 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	4,635,970 - 4,688,669 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUP155
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	22,516,990 - 22,589,838 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	22,520,443 - 22,590,119 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	23,672,725 - 23,742,044 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUP155
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	36,167,078 - 36,243,040 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666071	26,516,374 - 26,592,704 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nup155
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	17,682,837 - 17,761,531 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	17,682,816 - 17,760,448 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nup155
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	172,349,030 - 172,401,208 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nup155
607 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	25
Count of miRNA genes:	24
Interacting mature miRNAs:	25
Transcripts:	ENSRNOT00000046069
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6480225	Gdil1	Gastrointestinal dilation QTL 1			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	58388201	77302351	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

MARC_21512-21513:1032982746:3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	57,243,848 - 57,244,861 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	57,249,173 - 57,250,185	NCBI	Rnor6.0
Rnor_5.0	2	77,256,475 - 77,257,487	UniSTS	Rnor5.0
RGSC_v3.4	2	57,753,905 - 57,754,917	UniSTS	RGSC3.4
Celera	2	52,858,433 - 52,859,445	UniSTS
Cytogenetic Map	2	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010063579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM038648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z21780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046069 ⟹ ENSRNOP00000042749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	57,206,661 - 57,258,242 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082694 ⟹ ENSRNOP00000074340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	58,928,537 - 58,981,242 (+)	Ensembl
mRatBN7.2 Ensembl	2	57,201,272 - 57,254,148 (+)	Ensembl
Rnor_6.0 Ensembl	2	57,206,613 - 57,258,295 (+)	Ensembl

RefSeq Acc Id:

NM_053952 ⟹ NP_446404

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,928,602 - 58,980,162 (+)	NCBI
mRatBN7.2	2	57,201,310 - 57,252,918 (+)	NCBI
Rnor_6.0	2	57,206,665 - 57,258,242 (+)	NCBI
Rnor_5.0	2	77,213,967 - 77,265,544 (+)	NCBI
RGSC_v3.4	2	57,711,414 - 57,762,974 (+)	RGD
Celera	2	52,816,019 - 52,867,498 (+)	RGD

Sequence:

show sequence

AATTCCGCTTGGTTTTTCTCACGGCTCTTCGCGGCTTTGGAGTATTTTTGTAACGCGGTGACGA
CGATTGTCGACATGCCATCTATGCTGGGCTCGATGATGGTGGCCTCTACGTCGGCCCCCTCCCT
GCAAGAAGCTTTGGAAAATGCGGGGAGGCTTATCGACCGACAGTTGCAAGAAGACCGCATGTAC
CCGGACCTTTCTGAGCTGCTCATGGTGTCGGCCCCAAACAGTCCTACTGTTTCTGGAATGTCTG
ATATGGATTACCCTCTGCAAGGACCAGGTCTACTGTCAGTACCGAGCCTTCCAGAGATCAGCAC
CATCCGAAGAGTTCCCCTCCGCCTGAGCTGGTTGAACAGTTTGGACACATGCAGTGTAACTGCA
ATGATGGGTGTTTTCCCTCCTATCAGCAGAGCTTGGCTTACAATTGACAGTGACATATTCATGT
GGAACTATGAAGACGGAGGTGATCTTGCCTATTTTGATGGACTCAGTGAGACAATTCTTGCTGT
GGGGCTTGTGAAACCAAAAGCTGGAATCTTTCAACCTCATGTAAGACATTTGTTGGTTTTGGCA
ACACCTGTGGATATAGTAATTCTTGGACTCAGCTATGCTAATGTTCAGACAGGCTCTGGCATCC
TTAATGACAGTGTGTGTGGTGGCCTGCAGCTGCTTCCAGATCCTTTGTACTCCCTTCCCACGGA
CAACACTTACCTTTTAACTATCACCTCCACGGATAATGGCAGGATTTTTTTGGCTGGAAAGGAC
GGCTGTTTGTATGAAGTAGCATACCAAGCAGAAGCAGGCTGGTTCAGTCAAAGATGTAGGAAGA
TAAACCACTCCAAGAGCTCGCTCTCCTTCCTCGTGCCTTCCTTGCTGCAGTTCACCTTCTCAGA
AGATGATCCTATTGTTCAAATTGAAATTGATAATTCCAGAAATATTTTGTATACCCGATCGGAG
AAAGGAGTGATACAGGTTTATGATTTGGGCCATGATGGACAGGGGATGAGTAGAGTTGCTTCAG
TTTCACAGAATGCCATTGTCTGTGCTGCTGGGAACATTGCTAGGACTATCGATCGTTCCGTTTT
TAAGCCAATTGTTCAAATAGCTGTGATTGAGAACTCTGAATCATTGGACTGTCAGTTACTGGCT
GTCACTCATGCAGGTGTGAGGTTGTATTTCAGCACTTGTCCGTTTAGACAGCCATTAGCTCGGC
CCAATACACTGACACTGGTTCACGTCCGGTTACCTCCTGGCTTCTCAGCGTCTTCAACAGTTGA
AAAGCCTTCAAAAGTACATAAAGCACTTTACAGTAAAGGAATTTTACTGATGACAGCCTCAGAA
AATGAAGATAATGACATTTTATGGTGTGTCAACCATGATACATTTCCTTTCCAAAAGCCAATGA
TGGAAACTCAGATGACAACTCGTGTTGATGGCCATTCCTGGGCTCTTTCTGCAATAGATGAATT
AAAAGTAGATAAAATAATCACGCCTTTAAATAAAGATCATATTCCAATAACTGACTCCCCAGTT
GTTGTACAACAGCACATGTTGCCTCCAAAGAAATTCGTTCTCCTCTCAGCACAGGGTAGTCTTA
TGTTTCACAAACTTAGACCCGTAGATCAGCTGAGACATCTGCTTGTGAGTAACGTGGGAGGGGA
TGGAGAAGAGATTGAGAGATTCTTCAAATTACATCAGGAAGACCAAGCTTGTGCGACGTGCCTT
ATTCTTGCTTGTTCCACCGCTGCCTGTGACAGAGAGGTGTCTGCCTGGGCTACGAGGGCATTCT
TTAGGTATGGTGGTGAGGCACAGATGAGATTTCCAGCTACTCTTCCCACTCCGAGTAACGTTGG
TCCCATCCTGGGCTCTCCTATGTATTCTAGTTCTCCTGTTCCTACTGGGAGTCCCTATCCAAAT
CCTTCCTCTTTGGGGACACCATCCCATGGTGCTCAGCCTCCTACCATGTCAACCCCAATGTCTG
CTGTTGGAAACCCAGCCATGCAGGCTGCAAGCCTGAGTGGTTTGACTGGACCAGAGATTGTGTA
CTCAGGAAAACACAACGGTATTTGCATTTACTTTTCTCGAATCATGGGAAATATTTGGGATGCT
AGCTTAGTTGTTGAAAGAGTATTCAAGAGTTCCAACAGGGAGATCACTGCAATTGAAAGCAGTG
TGCCTATCCAGCTGCTGGAGTCAGTGCTACAGGAACTGAAGGGTTTGCAGGAATTTCTAGACAG
AAATTCTCAGTTTTCAGGAGGACCACTAGGAAATCCAAATACCACTGCCAAAGTGCAGCAGAGG
CTGCTTGGAGTCATGCGTCCCGAGAATGGAAACACCCAGCAAATGCAACAGGAGCTGCAGAGGA
AGTTTCATGAGGCTCAACTGAGTGAGAAGATTTCACTTCAGGCAATCCAGCAGCTAGTTAGAAA
ATCGTACCAAGCTCTGGCTTTGTGGAAACTCCTTTGTGAACATCAGTTTACTGTCATTGTAGGA
GAACTTCAAAAGGAATTTCAAGAGCAGCTGAAGATCACTACCTTTAAGGATCTGGTAATCAGGG
AGAAAGAGGTCACTGGAGCACTAATTGCTTCTCTCATCAACTGCTACATCAGAGACAATGCTGC
TGTAGATGGCATTAGTTTACATCTGCAGGACACCTGTCCGCTTCTGTATAGCACAGATGATGCA
GTTTGTTCCAAGGCAAATGAACTTCTTCAGCGTTCCCGGCAAGTTCAGAGTAAGAGCGAGAGAG
AGAGGATGTTGAGGGAGTCTCTGAAGGAGTACCAGAAAATCAGCAACCAAGTAGACCTCCCCAG
TGTGTGTGCTCAGTATCGGCAAGTGCGCTTTTATGAGGGTGTGGTGGAACTGTCTCTTACTGCT
GCGGAGAAGAAAGATCCTCAGGGTCTTGGACTCCATTTCTATAAGCATGGGGAACCGGAAGAGG
ATGTGGTTGGTCTTCAGACTTTCCAAGAGAGATTAAACAGTTACAAGTGCATCACAGACACTCT
TCAAGAACTGGTAAATCAAAGTAAGGCAGCTCCTCAGTCTCCTAGTGTACCCAAAAAGCCTGGT
CCTCCAGTGTTGTCATCCGATCCCAACATGCTGAGCAATGAAGAGGCAGGACATCACTTTGAAC
AAATGCTTAAACTGGCTCAGCGATCCAAGGATGAGCTCTTCAGTATTGCTCTCTATAACTGGCT
AATCCAAGCTGACCTTGCAGATAAACTGCTACAGATTGCATCTCCATTTCTTGAGCCACATCTT
GTCCGAATGGCCAAAGTGGATCAAAACCGAGTTCGCTATATGGATTTACTCTGGAGGTATTATG
AGAAGAACAGGAGTTTCAGCAGTGCTGCTCGGGTCCTGTCCAAGCTGGCCGACATGCACAGCAC
AGAAATTTCACTGCAGCAGCGACTAGAATACATTGCTCGAGCCATTCTTAGTGCAAAAAGTTCC
ACTGCCATTTCATCCATAGCTGCAGATGGTGAATTCCTACATGAACTAGAAGAGAAAATGGAAG
TTGCTAGGATCCAACTTCAGATACAAGAGACACTACAAAGGCAGTACTCCCATCATTCTTCAGT
GCAGGATGCAATTTCTCAGCTGGATTCTGAGCTCATGGACATTACTAAGCTTTATGGAGAATTT
GCTGACCCATTTAAACTTGCAGAATGTAAACTTGCAATCATTCATTGTGCTGGTTATTCAGATC
CCATATTGGTACACACACTTTGGCAAGATATCATAGAGAAAGAATTGAGTGATAGCGTAACATT
GAGTTCATCAGATCGAATGCATGCTCTTAGCCTCAAGCTTGTTCTCCTTGGCAAAATCTATGCT
GGCACACCTCGATTTTTCCCTCTGGATTTCATTGTGCAGTTCTTGGAGCAGCAAGTTTGTACTT
TAAACTGGGATGTGGGATTTGTGATACAGACCATGAATGAAATCGGTGTGCCTTTACCTAGGCT
ACTAGAAGTTTATGATCAGCTCTTCAAATCAAGGGATCCATTCTGGAACAGAGTGAAAAGTCCA
CTGCACCTTTTGGATTGTATCCATGTACTGTTGACAAGATATGTTGAGAATCCTAGCCTAGTTT
TAAATTGTGAGAGGAGAAGGTTTACAAATCTCTGCCTGGATGCCGTCTGTGGTTATCTGGTTGA
ACTTCAGTCAATGAGCTCTTCGGTGGCAGTACAAGCCATCACTGGGAATTTTAAATCTCTCCAA
GCGAAGTTGGAACGGCTCCATTAATTACTGTAGTATATTTTCTTGCTTGCGTTTTGGTCTGTAA
AATAAAAGCTCGGATGGGTCCAG

hide sequence

RefSeq Acc Id:

XR_010063579

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,927,171 - 58,972,131 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446404	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA79848	(Get FASTA)	NCBI Sequence Viewer
	EDL75690	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074340
GenBank Protein	P37199	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446404 ⟸ NM_053952

- UniProtKB:

P37199 (UniProtKB/Swiss-Prot), A6KGH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPSMLGSMMVASTSAPSLQEALENAGRLIDRQLQEDRMYPDLSELLMVSAPNSPTVSGMSDMDY
PLQGPGLLSVPSLPEISTIRRVPLRLSWLNSLDTCSVTAMMGVFPPISRAWLTIDSDIFMWNYE
DGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANVQTGSGILNDS
VCGGLQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHS
KSSLSFLVPSLLQFTFSEDDPIVQIEIDNSRNILYTRSEKGVIQVYDLGHDGQGMSRVASVSQN
AIVCAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTL
TLVHVRLPPGFSASSTVEKPSKVHKALYSKGILLMTASENEDNDILWCVNHDTFPFQKPMMETQ
MTTRVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHK
LRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWATRAFFRYG
GEAQMRFPATLPTPSNVGPILGSPMYSSSPVPTGSPYPNPSSLGTPSHGAQPPTMSTPMSAVGN
PAMQAASLSGLTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERVFKSSNREITAIESSVPIQ
LLESVLQELKGLQEFLDRNSQFSGGPLGNPNTTAKVQQRLLGVMRPENGNTQQMQQELQRKFHE
AQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTVIVGELQKEFQEQLKITTFKDLVIREKEV
TGALIASLINCYIRDNAAVDGISLHLQDTCPLLYSTDDAVCSKANELLQRSRQVQSKSERERML
RESLKEYQKISNQVDLPSVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDVVG
LQTFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLK
LAQRSKDELFSIALYNWLIQADLADKLLQIASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNR
SFSSAARVLSKLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARI
QLQIQETLQRQYSHHSSVQDAISQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILV
HTLWQDIIEKELSDSVTLSSSDRMHALSLKLVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWD
VGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRVKSPLHLLDCIHVLLTRYVENPSLVLNCE
RRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH

hide sequence

Ensembl Acc Id:

ENSRNOP00000074340 ⟸ ENSRNOT00000082694

Ensembl Acc Id:

ENSRNOP00000042749 ⟸ ENSRNOT00000046069

Protein Domains

Nucleoporin Nup133/Nup155-like C-terminal Nucleoporin Nup133/Nup155-like N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P37199-F1-model_v2	AlphaFold	P37199	1-1390	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691176

Promoter ID:

EPDNEW_R1700

Type:

initiation region

Name:

Nup155_1

Description:

nucleoporin 155

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	57,206,619 - 57,206,679	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621199	AgrOrtholog
BioCyc Gene	G2FUF-54126	BioCyc
Ensembl Genes	ENSRNOG00000013411	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000082694	ENTREZGENE
Gene3D-CATH	1.20.120.1880	UniProtKB/Swiss-Prot
	1.20.58.1780	UniProtKB/Swiss-Prot
	1.25.40.440	UniProtKB/Swiss-Prot
	1.25.40.450	UniProtKB/Swiss-Prot
InterPro	Nucleoporin_Nup133/Nup155_C	UniProtKB/Swiss-Prot
	Nucleoporin_Nup133/Nup155_N	UniProtKB/Swiss-Prot
	Nucleoporin_Nup155	UniProtKB/Swiss-Prot
	Nucleoporin_Nup155_C_1	UniProtKB/Swiss-Prot
	Nucleoporin_Nup155_C_2	UniProtKB/Swiss-Prot
	Nucleoporin_Nup155_C_3	UniProtKB/Swiss-Prot
KEGG Report	rno:117021	UniProtKB/Swiss-Prot
NCBI Gene	117021	ENTREZGENE
PANTHER	NUCLEAR PORE COMPLEX PROTEIN NUP155	UniProtKB/Swiss-Prot
	PTHR10350	UniProtKB/Swiss-Prot
Pfam	Nucleoporin_C	UniProtKB/Swiss-Prot
	Nucleoporin_N	UniProtKB/Swiss-Prot
PhenoGen	Nup155	PhenoGen
RatGTEx	ENSRNOG00000013411	RatGTEx
UniProt	A0A0G2K7T6_RAT	UniProtKB/TrEMBL
	A6KGH5	ENTREZGENE, UniProtKB/TrEMBL
	NU155_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Nup155	nucleoporin 155		nucleoporin 155kD	Name updated	1299863	APPROVED
2002-08-07	Nup155	nucleoporin 155kD			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains 46 consensus sites for various kinases	729045

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)