Rpl28 (ribosomal protein L28) - Rat Genome Database

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Gene: Rpl28 (ribosomal protein L28) Rattus norvegicus
Analyze
Symbol: Rpl28
Name: ribosomal protein L28
RGD ID: 621193
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Part of cytosolic large ribosomal subunit. Biomarker of middle cerebral artery infarction. Orthologous to human RPL28 (ribosomal protein L28); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L28; large ribosomal subunit protein eL28
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl28l1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,080,945 - 78,083,532 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl178,080,945 - 78,083,771 (-)EnsemblGRCr8
mRatBN7.2169,052,148 - 69,054,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,053,203 - 69,055,032 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx174,397,187 - 74,399,774 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,961,498 - 82,964,085 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,110,331 - 76,112,918 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,619,282 - 72,621,941 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,619,282 - 72,621,519 (-)Ensemblrn6Rnor6.0
Rnor_5.0175,912,839 - 75,915,497 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,768,597 - 67,771,158 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,070,140 - 68,072,375 (+)NCBICelera
RGSC_v3.1167,846,707 - 67,849,269 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
deguelin  (ISO)
deoxynivalenol  (ISO)
dicyclanil  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fenpyroximate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
Mesaconitine  (EXP)
methylparaben  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (EXP)
Nutlin-3  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
phenytoin  (ISO)
PhIP  (EXP)
potassium chromate  (ISO)
propanal  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rimonabant  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tebufenpyrad  (ISO)
thifluzamide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Localization of ribosomal proteins on the surface of mammalian 60S ribosomal subunits by means of immobilized enzymes. Correlation with chemical cross-linking data. Marion MJ and Marion C, Biochem Biophys Res Commun. 1987 Dec 31;149(3):1077-83.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. The primary structure of rat ribosomal proteins: the amino acid sequences of L27a and L28 and corrections in the sequences of S4 and S12. Wool IG, etal., Biochim Biophys Acta 1990 Aug 27;1050(1-3):69-73.
10. Irreversible aggregation of protein synthesis machinery after focal brain ischemia. Zhang F, etal., J Neurochem. 2006 Jul;98(1):102-12.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:15121898   PMID:19946888   PMID:20458337   PMID:22658674   PMID:24625528   PMID:24912190   PMID:30053369  


Genomics

Comparative Map Data
Rpl28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,080,945 - 78,083,532 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl178,080,945 - 78,083,771 (-)EnsemblGRCr8
mRatBN7.2169,052,148 - 69,054,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,053,203 - 69,055,032 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx174,397,187 - 74,399,774 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,961,498 - 82,964,085 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,110,331 - 76,112,918 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,619,282 - 72,621,941 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,619,282 - 72,621,519 (-)Ensemblrn6Rnor6.0
Rnor_5.0175,912,839 - 75,915,497 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,768,597 - 67,771,158 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,070,140 - 68,072,375 (+)NCBICelera
RGSC_v3.1167,846,707 - 67,849,269 (-)NCBI
Cytogenetic Map1q12NCBI
RPL28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,385,932 - 55,403,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,383,856 - 55,403,250 (+)Ensemblhg38GRCh38
GRCh371955,897,300 - 55,914,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,589,112 - 60,595,265 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341960,589,111 - 60,595,261NCBI
Celera1952,938,123 - 52,944,274 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,219,035 - 52,225,186 (+)NCBIHuRef
CHM1_11955,890,859 - 55,897,010 (+)NCBICHM1_1
T2T-CHM13v2.01958,481,406 - 58,498,795 (+)NCBIT2T-CHM13v2.0
Rpl28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,795,964 - 4,797,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,795,873 - 4,798,065 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3874,792,965 - 4,794,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,792,874 - 4,795,066 (+)Ensemblmm10GRCm38
MGSCv3774,744,567 - 4,746,149 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3674,396,038 - 4,409,032 (+)NCBIMGSCv36mm8
Celera74,522,721 - 4,524,303 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.77NCBI
Rpl28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567860,078 - 862,853 (-)Ensembl
ChiLan1.0NW_004955567860,351 - 862,853 (-)NCBIChiLan1.0ChiLan1.0
RPL28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,524,324 - 61,526,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,253,344 - 63,255,882 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,428,999 - 52,431,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,116,514 - 61,120,500 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,116,514 - 61,135,785 (+)EnsemblpanPan2panpan1.1
Rpl28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,923,338 - 1,925,978 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886633,050 - 637,193 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936886633,303 - 635,888 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,556,687 - 59,562,147 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1659,556,586 - 59,559,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,987,167 - 47,989,673 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,987,663 - 47,993,276 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045633,374 - 635,905 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,919,657 - 1,925,035 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248321,922,802 - 1,925,116 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl28
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12177,369,622 - 177,371,230 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl28
32 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
RH134468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X151,323,226 - 151,323,446 (-)MAPPERmRatBN7.2
mRatBN7.2169,053,203 - 69,053,631 (+)MAPPERmRatBN7.2
Rnor_6.0X157,200,517 - 157,200,736NCBIRnor6.0
Rnor_6.0172,620,338 - 72,620,765NCBIRnor6.0
Rnor_5.0175,914,014 - 75,914,441UniSTSRnor5.0
Rnor_5.01152,950,036 - 152,950,255UniSTSRnor5.0
Cytogenetic Map1q12UniSTS
Cytogenetic MapXq37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006228288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000058943   ⟹   ENSRNOP00000055726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl178,080,945 - 78,083,771 (-)Ensembl
mRatBN7.2 Ensembl169,053,203 - 69,055,032 (-)Ensembl
Rnor_6.0 Ensembl172,619,282 - 72,621,519 (-)Ensembl
RefSeq Acc Id: NM_022697   ⟹   NP_073188
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8178,080,945 - 78,083,532 (-)NCBI
mRatBN7.2169,052,148 - 69,054,735 (-)NCBI
Rnor_6.0172,619,282 - 72,621,517 (-)NCBI
Rnor_5.0175,912,839 - 75,915,497 (+)NCBI
RGSC_v3.4167,768,597 - 67,771,158 (-)RGD
Celera168,070,140 - 68,072,375 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_073188 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81800 (Get FASTA)   NCBI Sequence Viewer  
  CAA36846 (Get FASTA)   NCBI Sequence Viewer  
  EDL75859 (Get FASTA)   NCBI Sequence Viewer  
  EDL75860 (Get FASTA)   NCBI Sequence Viewer  
  EDL75861 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055726
GenBank Protein P17702 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073188   ⟸   NM_022697
- UniProtKB: P17702 (UniProtKB/Swiss-Prot),   Q642E2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055726   ⟸   ENSRNOT00000058943
Protein Domains
Ribosomal eL28/Mak16

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17702-F1-model_v2 AlphaFold P17702 1-137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689695
Promoter ID:EPDNEW_R220
Type:single initiation site
Name:Rpl28_1
Description:ribosomal protein L28
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0172,621,519 - 72,621,579EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621193 AgrOrtholog
BioCyc Gene G2FUF-60862 BioCyc
Ensembl Genes ENSRNOG00000017127 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000058943 ENTREZGENE
Gene3D-CATH 3.30.390.110 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7131175 IMAGE-MGC_LOAD
InterPro L28e/Mak16 UniProtKB/Swiss-Prot
  Ribosomal_L28e UniProtKB/Swiss-Prot
MGC_CLONE MGC:93429 IMAGE-MGC_LOAD
NCBI Gene 64638 ENTREZGENE
PANTHER PTHR10544 UniProtKB/Swiss-Prot
Pfam Ribosomal_L28e UniProtKB/Swiss-Prot
PhenoGen Rpl28 PhenoGen
RatGTEx ENSRNOG00000017127 RatGTEx
UniProt F7EPV5_RAT UniProtKB/TrEMBL
  P17702 ENTREZGENE
  Q642E2 ENTREZGENE, UniProtKB/TrEMBL
  RL28_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl28  ribosomal protein L28      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl28  ribosomal protein L28      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 136 amino acids and has a molecular weight of 15,707 634018