Rpl22 (ribosomal protein L22) - Rat Genome Database

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Gene: Rpl22 (ribosomal protein L22) Rattus norvegicus
Analyze
Symbol: Rpl22
Name: ribosomal protein L22
RGD ID: 621189
Description: Predicted to enable RNA binding activity; heparin binding activity; and identical protein binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and translation at presynapse. Predicted to act upstream of or within alpha-beta T cell differentiation. Located in ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL22 (ribosomal protein L22); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; 9-cis-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L22; large ribosomal subunit protein eL22
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl22-ps1   Rpl22-ps2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,114,432 - 168,126,114 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,979,665 - 113,980,621 (+)EnsemblGRCr8
GRCr8 Ensembl5168,111,074 - 168,126,114 (+)EnsemblGRCr8
GRCr8 Ensembl4120,907,750 - 120,908,668 (-)EnsemblGRCr8
mRatBN7.25162,835,241 - 162,843,394 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,350,345 - 119,350,891 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7112,099,450 - 112,100,406 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5162,833,740 - 162,843,368 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5165,538,315 - 165,545,002 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,359,915 - 167,366,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,322,117 - 167,328,804 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,506,150 - 169,512,875 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,506,138 - 169,512,871 (+)Ensemblrn6Rnor6.0
Rnor_5.05173,059,734 - 173,066,460 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45169,557,840 - 169,564,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5161,066,079 - 161,072,805 (+)NCBICelera
RGSC_v3.15169,568,027 - 169,574,750 (+)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (EXP)
acetamide  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beryllium sulfate  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
crocidolite asbestos  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
eugenol  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
inulin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
triptonide  (ISO)
tungsten  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L24. Chan YL, etal., Biochem Biophys Res Commun 1994 Jul 29;202(2):1176-80.
3. A novel heparin-binding protein, HBp15, is identified as mammalian ribosomal protein L22. Fujita Y, etal., Biochem Biophys Res Commun. 1994 Mar 15;199(2):706-13.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins L4, L5, L7, L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37, and L39. Tsurugi K, etal., J Biol Chem. 1976 Dec 25;251(24):7940-6.
Additional References at PubMed
PMID:7999786   PMID:12962325   PMID:17555992   PMID:18809582   PMID:20458337   PMID:21423176   PMID:21700703   PMID:22658674   PMID:22681889   PMID:22720776   PMID:23106098   PMID:23376485  
PMID:23979707   PMID:24625528   PMID:24930395   PMID:27321671   PMID:29476059  


Genomics

Comparative Map Data
Rpl22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,114,432 - 168,126,114 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,979,665 - 113,980,621 (+)EnsemblGRCr8
GRCr8 Ensembl5168,111,074 - 168,126,114 (+)EnsemblGRCr8
GRCr8 Ensembl4120,907,750 - 120,908,668 (-)EnsemblGRCr8
mRatBN7.25162,835,241 - 162,843,394 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,350,345 - 119,350,891 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7112,099,450 - 112,100,406 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5162,833,740 - 162,843,368 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5165,538,315 - 165,545,002 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,359,915 - 167,366,602 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,322,117 - 167,328,804 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,506,150 - 169,512,875 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,506,138 - 169,512,871 (+)Ensemblrn6Rnor6.0
Rnor_5.05173,059,734 - 173,066,460 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45169,557,840 - 169,564,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5161,066,079 - 161,072,805 (+)NCBICelera
RGSC_v3.15169,568,027 - 169,574,750 (+)NCBI
Cytogenetic Map5q36NCBI
RPL22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,185,020 - 6,199,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,185,020 - 6,209,389 (-)Ensemblhg38GRCh38
GRCh3716,245,080 - 6,259,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,167,667 - 6,182,266 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3416,179,346 - 6,193,945NCBI
Celera15,359,593 - 5,374,192 (-)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,393,350 - 5,407,949 (-)NCBIHuRef
CHM1_116,233,456 - 6,248,323 (-)NCBICHM1_1
T2T-CHM13v2.015,710,666 - 5,725,241 (-)NCBIT2T-CHM13v2.0
Rpl22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,408,893 - 152,418,539 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,410,199 - 152,418,528 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384152,324,436 - 152,334,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,325,742 - 152,334,071 (+)Ensemblmm10GRCm38
MGSCv374151,699,987 - 151,708,180 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364151,169,676 - 151,177,871 (+)NCBIMGSCv36mm8
Celera4154,613,204 - 154,621,397 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.03NCBI
Rpl22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,302,092 - 6,310,789 (+)Ensembl
ChiLan1.0NW_0049554866,302,092 - 6,310,789 (+)NCBIChiLan1.0ChiLan1.0
RPL22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,023,791 - 222,038,546 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,664,931 - 220,679,579 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014,952,104 - 4,966,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,207,507 - 6,228,888 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,207,507 - 6,219,947 (-)EnsemblpanPan2panpan1.1
RPL22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,089,862 - 60,100,963 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,091,345 - 60,100,846 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha560,101,236 - 60,110,631 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0560,306,959 - 60,316,350 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,305,267 - 60,316,325 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,306,561 - 60,315,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,173,245 - 60,182,757 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,574,765 - 60,584,151 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,566,959 - 30,574,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,052,182 - 1,061,614 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,052,197 - 1,059,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100511546
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.128,249,002 - 8,249,496 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,516,635 - 7,517,036 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,539,503 - 125,553,775 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,645,159 - 29,659,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,188,925 - 5,199,059 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248185,189,154 - 5,198,577 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl22
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v118,407,117 - 8,415,703 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000014904
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000014904   ⟹   ENSRNOP00000014905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,099,450 - 112,100,406 (+)Ensembl
Rnor_6.0 Ensembl5169,506,138 - 169,512,871 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098006   ⟹   ENSRNOP00000078914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5162,835,479 - 162,843,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098098   ⟹   ENSRNOP00000085124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5168,115,453 - 168,126,114 (+)Ensembl
mRatBN7.2 Ensembl5162,833,740 - 162,843,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104092   ⟹   ENSRNOP00000076672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5168,111,074 - 168,126,114 (+)Ensembl
mRatBN7.2 Ensembl5162,835,254 - 162,843,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117847   ⟹   ENSRNOP00000094682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5168,117,726 - 168,126,114 (+)Ensembl
mRatBN7.2 Ensembl5162,838,237 - 162,843,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120302   ⟹   ENSRNOP00000085504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5168,119,243 - 168,126,114 (+)Ensembl
mRatBN7.2 Ensembl5162,836,523 - 162,843,368 (+)Ensembl
RefSeq Acc Id: NM_031104   ⟹   NP_112366
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85168,117,961 - 168,126,114 (+)NCBI
mRatBN7.25162,835,241 - 162,843,394 (+)NCBI
Rnor_6.05169,506,150 - 169,512,875 (+)NCBI
Rnor_5.05173,059,734 - 173,066,460 (+)NCBI
RGSC_v3.45169,557,840 - 169,564,566 (+)RGD
Celera5161,066,079 - 161,072,805 (+)RGD
Sequence:
RefSeq Acc Id: XM_063288473   ⟹   XP_063144543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85168,116,402 - 168,126,114 (+)NCBI
RefSeq Acc Id: XM_063288474   ⟹   XP_063144544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85168,116,386 - 168,126,114 (+)NCBI
RefSeq Acc Id: XM_063288475   ⟹   XP_063144545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85168,114,432 - 168,126,114 (+)NCBI
RefSeq Acc Id: XM_063288476   ⟹   XP_063144546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85168,121,026 - 168,126,114 (+)NCBI
RefSeq Acc Id: NP_112366   ⟸   NM_031104
- UniProtKB: P47198 (UniProtKB/Swiss-Prot),   F7FLF2 (UniProtKB/TrEMBL),   Q6PDV8 (UniProtKB/TrEMBL),   A6IUI2 (UniProtKB/TrEMBL),   A0A8I5Y921 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014905   ⟸   ENSRNOT00000014904
Ensembl Acc Id: ENSRNOP00000076672   ⟸   ENSRNOT00000104092
Ensembl Acc Id: ENSRNOP00000085504   ⟸   ENSRNOT00000120302
Ensembl Acc Id: ENSRNOP00000078914   ⟸   ENSRNOT00000098006
Ensembl Acc Id: ENSRNOP00000094682   ⟸   ENSRNOT00000117847
Ensembl Acc Id: ENSRNOP00000085124   ⟸   ENSRNOT00000098098
RefSeq Acc Id: XP_063144545   ⟸   XM_063288475
- Peptide Label: isoform X3
- UniProtKB: P47198 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144544   ⟸   XM_063288474
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZLX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144543   ⟸   XM_063288473
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZF1 (UniProtKB/TrEMBL),   A0A8I5ZLX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144546   ⟸   XM_063288476
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AMR8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47198-F1-model_v2 AlphaFold P47198 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694305
Promoter ID:EPDNEW_R4829
Type:multiple initiation site
Name:Rpl22_1
Description:ribosomal protein L22
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05169,506,140 - 169,506,200EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621189 AgrOrtholog
BioCyc Gene G2FUF-39013 BioCyc
Ensembl Genes ENSRNOG00000011104 Ensembl
  ENSRNOG00000028747 Ensembl
  ENSRNOG00000069581 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000098098 ENTREZGENE
  ENSRNOT00000104092 ENTREZGENE
  ENSRNOT00000117847 ENTREZGENE
Gene3D-CATH 3.30.1360.210 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887477 IMAGE-MGC_LOAD
  IMAGE:7300771 IMAGE-MGC_LOAD
InterPro Ribosomal_L22e UniProtKB/Swiss-Prot
  Ribosomal_L22e_sf UniProtKB/Swiss-Prot
KEGG Report rno:81768 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105407 IMAGE-MGC_LOAD
  MGC:72795 IMAGE-MGC_LOAD
NCBI Gene 81768 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L22 UniProtKB/Swiss-Prot
  PTHR10064 UniProtKB/Swiss-Prot
Pfam Ribosomal_L22e UniProtKB/Swiss-Prot
PhenoGen Rpl22 PhenoGen
RatGTEx ENSRNOG00000011104 RatGTEx
  ENSRNOG00000028747 RatGTEx
  ENSRNOG00000069581 RatGTEx
UniProt A0A8I5Y921 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLX1 ENTREZGENE
  A0A8I5ZZF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GCY8_RAT UniProtKB/TrEMBL
  A0A8J8XZ98_RAT UniProtKB/TrEMBL
  A0ABZ3NN65_RAT UniProtKB/TrEMBL
  A6IUI2 ENTREZGENE
  F7FLF2 ENTREZGENE
  P47198 ENTREZGENE
  Q6PDV8 ENTREZGENE, UniProtKB/TrEMBL
  RL22_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl22  ribosomal protein L22      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl22  ribosomal protein L22      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other gene may be present in 9-11 copies 633861