Rpl10 (ribosomal protein L10) - Rat Genome Database

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Gene: Rpl10 (ribosomal protein L10) Rattus norvegicus
Analyze
Symbol: Rpl10
Name: ribosomal protein L10
RGD ID: 621178
Description: Predicted to enable translation regulator activity. Predicted to be a structural constituent of ribosome. Involved in liver regeneration. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to human RPL10 (ribosomal protein L10); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L10; large ribosomal subunit protein uL16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl10-ps13  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,205,850 - 157,208,057 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,205,836 - 157,208,049 (+)EnsemblGRCr8
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,195,691 - 154,197,898 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,758,924 - 157,761,131 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,430,723 - 155,432,930 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)Ensemblrn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,839,998 - 135,842,208 (-)NCBICelera
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Cytogenetic MapXq37NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2-nitrofluorene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3'-diindolylmethane  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cocaine  (EXP)
crocidolite asbestos  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
dichlorine  (EXP)
diethylstilbestrol  (EXP)
dihydroartemisinin  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
eugenol  (EXP)
folic acid  (ISO)
furfural  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel sulfate  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
thapsigargin  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L10: relationship to a Jun-binding protein and to a putative Wilms' tumor suppressor. Chan YL, etal., Biochem Biophys Res Commun 1996 Aug 23;225(3):952-6.
3. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Photoincorporation of tetracycline into rat-liver ribosomes and subunits. Reboud AM, etal., Eur J Biochem. 1982 May 17;124(2):389-96.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9443083   PMID:10234813   PMID:10508860   PMID:12962325   PMID:15489334   PMID:16452087   PMID:19946888   PMID:22658674   PMID:22681889   PMID:24930395   PMID:25316788   PMID:26290468  
PMID:30053369  


Genomics

Comparative Map Data
Rpl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,205,850 - 157,208,057 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,205,836 - 157,208,049 (+)EnsemblGRCr8
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,195,691 - 154,197,898 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,758,924 - 157,761,131 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,430,723 - 155,432,930 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)Ensemblrn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,839,998 - 135,842,208 (-)NCBICelera
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Cytogenetic MapXq37NCBI
RPL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,398,065 - 154,402,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,389,955 - 154,409,168 (+)Ensemblhg38GRCh38
GRCh37X153,626,406 - 153,630,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,279,912 - 153,283,874 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X153,147,564 - 153,151,527NCBI
CeleraX153,787,629 - 153,791,737 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,204,017 - 142,208,069 (+)NCBIHuRef
CHM1_1X153,538,214 - 153,542,323 (+)NCBICHM1_1
T2T-CHM13v2.0X152,634,585 - 152,638,859 (+)NCBIT2T-CHM13v2.0
Rpl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,314,463 - 73,316,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,314,418 - 73,316,741 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X74,270,816 - 74,273,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,270,812 - 74,273,135 (+)Ensemblmm10GRCm38
MGSCv37X71,516,155 - 71,518,474 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X70,523,577 - 70,525,846 (+)NCBIMGSCv36mm8
CeleraX65,524,593 - 65,526,912 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Rpl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580903,412 - 906,439 (+)Ensembl
ChiLan1.0NW_004955580903,618 - 906,439 (+)NCBIChiLan1.0ChiLan1.0
RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,372,578 - 154,375,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,376,267 - 154,378,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,839,739 - 143,844,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,707,645 - 153,712,855 (+)NCBIPanPan1.1PanPan1.1panPan2
RPL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,098,020 - 122,100,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,098,020 - 122,100,719 (+)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.0X125,239,741 - 125,242,433 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,239,736 - 125,243,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,008,797 - 121,011,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,523,664 - 123,526,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,285,544 - 123,288,236 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,409,172 - 119,411,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,146,809 - 1,149,618 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,146,994 - 1,149,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,623,532 - 66,627,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X128,274,210 - 128,276,314 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000036352
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat

Markers in Region
RH139827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,056,983 - 152,057,167 (-)MAPPERmRatBN7.2
Rnor_6.0X156,437,841 - 156,438,024NCBIRnor6.0
Rnor_5.01152,177,988 - 152,178,171UniSTSRnor5.0
RGSC_v3.4X160,336,222 - 160,336,405UniSTSRGSC3.4
Celera1135,839,588 - 135,839,771UniSTS
Cytogenetic MapXq37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X87106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083951   ⟹   ENSRNOP00000070105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX157,205,836 - 157,208,049 (+)Ensembl
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)Ensembl
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)Ensembl
RefSeq Acc Id: NM_031100   ⟹   NP_112362
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,205,850 - 157,208,057 (+)NCBI
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBI
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBI
Rnor_5.01152,178,398 - 152,180,608 (-)NCBI
RGSC_v3.4X160,336,632 - 160,338,842 (-)RGD
Celera1135,839,998 - 135,842,208 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_112362 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58467 (Get FASTA)   NCBI Sequence Viewer  
  CAA60587 (Get FASTA)   NCBI Sequence Viewer  
  EDL84987 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070105
  ENSRNOP00000070105.1
GenBank Protein Q6PDV7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_112362   ⟸   NM_031100
- UniProtKB: Q6PDV7 (UniProtKB/Swiss-Prot),   A6KRS1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070105   ⟸   ENSRNOT00000083951

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PDV7-F1-model_v2 AlphaFold Q6PDV7 1-214 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702048
Promoter ID:EPDNEW_R12572
Type:initiation region
Name:Rpl10_1
Description:ribosomal protein L10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X156,440,446 - 156,440,506EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621178 AgrOrtholog
BioCyc Gene G2FUF-636 BioCyc
Ensembl Genes ENSRNOG00000056765 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000083951 ENTREZGENE
  ENSRNOT00000083951.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.60.300 UniProtKB/Swiss-Prot
  3.90.1170.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6918973 IMAGE-MGC_LOAD
InterPro Ribosomal_L10e UniProtKB/Swiss-Prot
  Ribosomal_L10e/L16 UniProtKB/Swiss-Prot
  Ribosomal_L10e/L16_sf UniProtKB/Swiss-Prot
  Ribosomal_L10e_CS UniProtKB/Swiss-Prot
  Ribosomal_uL16 UniProtKB/Swiss-Prot
KEGG Report rno:81764 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72797 IMAGE-MGC_LOAD
NCBI Gene 81764 ENTREZGENE
PANTHER PTHR11726 UniProtKB/Swiss-Prot
Pfam Ribosomal_L16 UniProtKB/Swiss-Prot
PhenoGen Rpl10 PhenoGen
PIRSF Ribosomal_L10 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_L10E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000056765 RatGTEx
Superfamily-SCOP SSF54686 UniProtKB/Swiss-Prot
UniProt A6KRS1 ENTREZGENE, UniProtKB/TrEMBL
  Q6PDV7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P45634 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Rpl10  ribosomal protein L10      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rpl10  ribosomal protein L10      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 213 amino acids 633814