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Gene: Usf1 (upstream transcription factor 1) Rattus norvegicus

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Symbol:

Usf1 (Ensembl: Tstd1)

Name:

upstream transcription factor 1 (Ensembl:thiosulfate sulfurtransferase like domain containing 1)

RGD ID:

620974

Description:

Enables DNA binding activity; DNA-binding transcription factor activity; and identical protein binding activity. Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in glucose metabolic process and positive regulation of transcription by RNA polymerase II. Predicted to be located in chromatin and nucleus. Predicted to be part of transcription regulator complex. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to several human genes including TSTD1 (thiosulfate sulfurtransferase like domain containing 1); INTERACTS WITH 1,2-dimethylhydrazine; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

upstream stimulatory factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USF1 (upstream transcription factor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usf1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usf1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USF1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USF1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usf1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USF1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USF1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usf1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usf1 (upstream transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TSTD1 (thiosulfate sulfurtransferase like domain containing 1)	HGNC	Ensembl, Inparanoid
Homo sapiens (human):	SLAMF8 (SLAM family member 8)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	USF1 (upstream transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	USF1 (upstream transcription factor 1)	Alliance	DIOPT (HGNC)
Mus musculus (house mouse):	Usf1 (upstream transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tstd1 (thiosulfate sulfurtransferase (rhodanese)-like domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TSTD1 (thiosulfate sulfurtransferase like domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usf1 (upstream transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-34l15.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usf1l (upstream transcription factor 1, like)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG12279	Alliance	DIOPT (OMA\|OrthoFinder\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RDL1	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	RDL2	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	CG4456	Alliance	DIOPT (OMA\|OrthoFinder\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usf	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tstd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,377,679 - 86,385,523 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,377,717 - 86,385,522 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,845,230 - 83,854,875 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,822,035 - 83,854,885 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,351,084 - 86,358,845 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,749,298 - 87,757,061 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,985,180 - 84,992,952 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,797,750 - 89,805,561 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,797,800 - 89,805,558 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,424,884 - 94,433,098 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,336,705 - 87,344,466 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,475,910 - 83,483,671 (+)	NCBI		Celera
RGSC_v3.1	13	87,525,588 - 87,533,349 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiovascular system disease (ISO)

familial combined hyperlipidemia (ISO)

Hyperlipidemia, Combined, 1 (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(R)-noradrenaline (ISO)

1,2-dimethylhydrazine (EXP,ISO)

1,3-dinitrobenzene (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 12177 (ISO)

chromium(6+) (EXP)

colforsin daropate hydrochloride (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dobutamine (ISO)

doxorubicin (ISO)

ethanol (EXP)

FR900359 (ISO)

genistein (ISO)

glafenine (EXP)

lead diacetate (ISO)

methimazole (EXP)

nitrates (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

terbutaline (ISO)

titanium dioxide (ISO)

triadimefon (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vanadium atom (ISO)

vanadium(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to glucose stimulus (IEA,ISO)

cellular response to insulin stimulus (IEA,ISO)

glucose mediated signaling pathway (IEA,ISO)

glucose metabolic process (IDA)

late viral transcription (IEA,ISO)

lipid homeostasis (IEA,ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (IDA,IEA,IMP,ISO)

regulation of DNA-templated transcription (IDA)

regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription from RNA polymerase II promoter by glucose (IEA)

response to hypoxia (IEA,ISO)

response to UV (IEA,ISO)

Cellular Component

chromatin (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

transcription regulator complex (IEA,ISO)

Molecular Function

bHLH transcription factor binding (IEA,ISO)

DNA binding (IDA,IEA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (IDA,IEA,IMP,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IDA,IEA,ISO)

double-stranded DNA binding (IDA)

E-box binding (IEA,ISO)

enzyme binding (IEA,ISO)

histone deacetylase binding (IEA,ISO)

identical protein binding (IEA,IMP,ISO)

protein binding (ISO)

protein dimerization activity (IEA)

protein heterodimerization activity (IEA,ISO)

protein homodimerization activity (IEA,ISO)

protein kinase binding (IEA,ISO)

protein-containing complex binding (IEA,IMP,ISO)

sequence-specific DNA binding (IDA,IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Osteopontin transcription in aortic vascular smooth muscle cells is controlled by glucose-regulated upstream stimulatory factor and activator protein-1 activities.	Bidder M, etal., J Biol Chem 2002 Nov 15;277(46):44485-96.
2.	Transcriptional regulation of the distal promoter of the rat pyruvate carboxylase gene by hepatocyte nuclear factor 3beta/Foxa2 and upstream stimulatory factors in insulinoma cells.	Boonsaen T, etal., Biochem J. 2007 Jul 15;405(2):359-67.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Common polymorphisms in the USF1 gene are not associated with type 2 diabetes in French Caucasians.	Gibson F, etal., Diabetes. 2005 Oct;54(10):3040-2.
5.	Genetic variants in the USF1 gene are associated with low-density lipoprotein cholesterol levels and incident type 2 diabetes mellitus in women: results from the MONICA/KORA Augsburg case-cohort study, 1984-2002.	Holzapfel C, etal., Eur J Endocrinol. 2008 Oct;159(4):407-16. Epub 2008 Jul 1.
6.	Risk alleles of USF1 gene predict cardiovascular disease of women in two prospective studies.	Komulainen K, etal., PLoS Genet. 2006 May;2(5):e69. Epub 2006 May 12.
7.	Upstream transcription factor 1 (USF1) in risk of type 2 diabetes: association study in 2000 Dutch Caucasians.	Meex SJ, etal., Mol Genet Metab. 2008 Jul;94(3):352-5. Epub 2008 Apr 28.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
11.	UTP induces osteopontin expression through a coordinate action of NFkappaB, activator protein-1, and upstream stimulatory factor in arterial smooth muscle cells.	Renault MA, etal., J Biol Chem. 2005 Jan 28;280(4):2708-13. Epub 2004 Nov 22.
12.	GOA pipeline	RGD automated data pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms.	Viollet B, etal., J Biol Chem 1996 Jan 19;271(3):1405-15.

Additional References at PubMed

PMID:2249772	PMID:7852331	PMID:9890958	PMID:12477932	PMID:12917334	PMID:15187018	PMID:15358760	PMID:15358786	PMID:15466854	PMID:15741164	PMID:18167349	PMID:18234320
PMID:18955796	PMID:19303849	PMID:19720831	PMID:21734262	PMID:25416956	PMID:27141965

Genomics

Comparative Map Data

Usf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,377,679 - 86,385,523 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,377,717 - 86,385,522 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,845,230 - 83,854,875 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,822,035 - 83,854,885 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,351,084 - 86,358,845 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,749,298 - 87,757,061 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,985,180 - 84,992,952 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,797,750 - 89,805,561 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,797,800 - 89,805,558 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,424,884 - 94,433,098 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,336,705 - 87,344,466 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,475,910 - 83,483,671 (+)	NCBI		Celera
RGSC_v3.1	13	87,525,588 - 87,533,349 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

USF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,039,251 - 161,045,977 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,039,249 - 161,045,977 (-)	Ensembl			hg38	GRCh38
GRCh37	1	161,009,041 - 161,015,767 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,275,665 - 159,282,381 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	157,822,114 - 157,828,830	NCBI
Celera	1	134,076,312 - 134,083,021 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,366,984 - 132,373,701 (-)	NCBI		HuRef
CHM1_1	1	162,405,214 - 162,411,968 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,176,758 - 160,183,484 (-)	NCBI		T2T-CHM13v2.0

Usf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,238,881 - 171,246,327 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,238,881 - 171,246,710 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	171,411,307 - 171,418,954 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,411,313 - 171,419,142 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	173,341,812 - 173,348,874 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,248,356 - 173,255,418 (+)	NCBI		MGSCv36	mm8
Celera	1	173,862,864 - 173,870,112 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.4	NCBI

Usf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,814,810 - 12,821,383 (-)	Ensembl
ChiLan1.0	NW_004955468	12,814,810 - 12,821,383 (-)	NCBI	ChiLan1.0	ChiLan1.0

USF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,805,930 - 88,812,635 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,496,242 - 88,502,950 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,451,829 - 136,458,543 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,365,500 - 140,371,861 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,365,500 - 140,371,861 (-)	Ensembl			panPan2	panpan1.1

USF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,412,943 - 21,419,072 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,413,050 - 21,418,569 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,486,852 - 21,492,994 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,530,655 - 21,536,698 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,530,705 - 21,536,694 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,418,726 - 21,424,800 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,832,652 - 21,838,692 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,241,989 - 22,248,018 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,143,911 - 7,150,715 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936903	352,590 - 359,398 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936903	352,569 - 359,350 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,395,482 - 89,401,047 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	89,395,133 - 89,401,048 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,372,800 - 97,378,677 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,943,505 - 2,950,481 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,943,559 - 2,949,807 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	1,981,494 - 1,988,142 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	318,637 - 325,520 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	318,998 - 325,168 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	50,581,157 - 50,588,760 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usf1
108 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	59
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000005811
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH133926

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	86,376,398 - 86,376,608 (+)	Marker Load Pipeline
mRatBN7.2	13	83,843,957 - 83,844,167 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,796,437 - 89,796,646	NCBI	Rnor6.0
Rnor_5.0	13	94,423,612 - 94,423,821	UniSTS	Rnor5.0
RGSC_v3.4	13	87,335,342 - 87,335,551	UniSTS	RGSC3.4
Celera	13	83,474,547 - 83,474,756	UniSTS
RH 3.4 Map	13	554.9	UniSTS
Cytogenetic Map	13	q24	UniSTS

MARC_4129-4130:996679399:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	86,382,042 - 86,382,736 (+)	Marker Load Pipeline
mRatBN7.2	13	83,849,602 - 83,850,296 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,802,081 - 89,802,774	NCBI	Rnor6.0
Rnor_5.0	13	94,429,618 - 94,430,311	UniSTS	Rnor5.0
RGSC_v3.4	13	87,340,986 - 87,341,679	UniSTS	RGSC3.4
Celera	13	83,480,191 - 83,480,884	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF026476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005811 ⟹ ENSRNOP00000005811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,822,035 - 83,854,885 (+)	Ensembl
Rnor_6.0 Ensembl	13	89,797,800 - 89,805,558 (+)	Ensembl

RefSeq Acc Id:

NM_031777 ⟹ NP_113965

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,377,762 - 86,385,523 (+)	NCBI
mRatBN7.2	13	83,845,321 - 83,853,083 (+)	NCBI
Rnor_6.0	13	89,797,800 - 89,805,561 (+)	NCBI
Rnor_5.0	13	94,424,884 - 94,433,098 (+)	NCBI
RGSC_v3.4	13	87,336,705 - 87,344,466 (+)	RGD
Celera	13	83,475,910 - 83,483,671 (+)	RGD

Sequence:

show sequence

GGAGAACGCTGCCGGGGGAAATTGGCGACTGAAGCGGCCTGGGCCGGATTTAGCATTCAGACCT
TGGCGTCAGGAGATACGAGGTCCTCCAAAAAAAGACCAGTGCCTCGGATGAGCCCCCTCACAGA
GAGATGAAGGGGCAGCAGAAAACAGCCGAAACCGAAGAGGGGACAGTGCAGATTCAGGAAGGTG
CAGTGGCTACTGGAGAGGACCCAACTAGTGTAGCTATCGCCAGCATCCAATCAGCTGCCACTTT
CCCCGACCCCAACGTCAAGTACGTCTTCCGAACTGAGAATGGGGGCCAGGTGATGTACAGGGTG
ATCCAGGTGTCTGAGGGGCAGCTGGATGGCCAGACAGAGGGCTCTGGCGCTATCAGTGGCTACC
CTGCCACTCAGTCTATGACTCAGGCAGTAATCCAGGGGGCTTTCACCAGTGATGATGCTGTTGA
CGCGGAGGGAACAGCTGCCGAGACCCACTACACTTACTTCCCCAGCACCGCAGTGGGAGATGGG
TCAGGGGGTACGACATCTGGGAGTACAACCGCCGTGGTCACCACCCAGGGCTCAGAGGCACTGC
TGGGGCAGGCAACCCCGCCCAGCACAGGCCAATTCTTTGTGATGATGTCACCACAAGAAGTGTT
ACAGGGAGGGAGCCAGCGGTCAATTGCCCCCAGGACCCACCCTTATTCCCCGAAGTCAGAGGCT
CCCAGGACAACGCGAGATGAGAAACGGAGGGCTCAACATAACGAAGTGGAGCGCCGCCGCCGGG
ACAAGATCAACAACTGGATTGTACAGCTGTCCAAAATCATCCCAGACTGCTCTATGGAGAGCAC
CAAGTCTGGCCAGAGTAAGGGTGGAATCCTGTCCAAAGCCTGTGACTATATCCAGGAACTACGT
CAGAGCAACCACCGGCTGTCTGAAGAGCTGCAGGGGTTAGATCAGTTGCAGCTCGACAATGACG
TGCTTCGACAGCAGGTGGAAGATCTTAAAAACAAGAACCTGCTACTACGAGCTCAGTTACGGCA
CCACGGATTAGAGGTCGTCATCAAGAATGACAGCAACTAACTGTGGGGACTCAGGGGCTTTGGG
CCCGAGAACTGCACATAGCCCAGGAGCAACAGGCTGACCCCATGCCCCTCTCTTTCACTGCCTA
CTTCTGGCGTGGGACTCGGGGGAGTTGGGCAAGTGTGATTTTGAACTGAGGCCTGTGGCATGGC
AGTCTGCAGTGAGTGCTGGGAAACCGTGTGGACACGCACCGCCAGCCTTGCCTGCCCCCACCGC
GCAGTCCCCGGGCCCTGGTGCTCCTTTGGCACACTGCATGTGCTGTCTCCTTGGTGGACACTGG
ACACACGAAATCTGGGCTCGCCGCGTGCTTGCTTAGAGTGCCTGGCAGAGGGTCTGTGGGCCGA
GTATTTCACTGGTTCTTCCTTTCTCTGAAGCAGAAGTTAAGATACATACCTGATTACTCTGGGG
AGCAGGCTTACTCAAGAGGTGGGGAAGGATGCTAGCGGGCTGCTCTCCCAGGAGTAGAGGGGGC
AGTGAGCAGCCGAAGCCTCTGCAGAAGGCCCTGGAGTCAGGGAGAGCTATAGGCAGGGCGGGTT
CACAGAGAGCCCGCCCTGTTCCAGGGGTGGTTCTTTTTATTTCTTTACTTTTTTTTTTTTAAGA
TAAAATTGTTTAGAGCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250266 ⟹ XP_006250328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,377,684 - 86,385,523 (+)	NCBI
mRatBN7.2	13	83,845,271 - 83,853,075 (+)	NCBI
Rnor_6.0	13	89,797,750 - 89,805,561 (+)	NCBI
Rnor_5.0	13	94,424,884 - 94,433,098 (+)	NCBI

Sequence:

show sequence

CTGGGACTGCGCATGAGCAGCTGTCTATGGAGAGACCTAGATCCAAAGACGGAGAACGCTGCCG
GGGGAAATTGGCGACTGAAGCGGCCTGGGCCGGCCAGCCTTGCCATCAGAATTGGGAGAGCTGA
CTGCTCTTTGAGGATGATTGGTTTATCTCCTGGTTGCGTCTTCTTGGAGCCTGGGATGCCTGTT
CAGTTGCTTTGCCTCACTGCAGACTCTGATTCCCACCAGGATTTAGCATTCAGACCTTGGCGTC
AGGAGATACGAGGTCCTCCAAAAAAAGACCAGTGCCTCGGATGAGCCCCCTCACAGAGAGATGA
AGGGGCAGCAGAAAACAGCCGAAACCGAAGAGGGGACAGTGCAGATTCAGGAAGGTGCAGTGGC
TACTGGAGAGGACCCAACTAGTGTAGCTATCGCCAGCATCCAATCAGCTGCCACTTTCCCCGAC
CCCAACGTCAAGTACGTCTTCCGAACTGAGAATGGGGGCCAGGTGATGTACAGGGTGATCCAGG
TGTCTGAGGGGCAGCTGGATGGCCAGACAGAGGGCTCTGGCGCTATCAGTGGCTACCCTGCCAC
TCAGTCTATGACTCAGGCAGTAATCCAGGGGGCTTTCACCAGTGATGATGCTGTTGACGCGGAG
GGAACAGCTGCCGAGACCCACTACACTTACTTCCCCAGCACCGCAGTGGGAGATGGGTCAGGGG
GTACGACATCTGGGAGTACAACCGCCGTGGTCACCACCCAGGGCTCAGAGGCACTGCTGGGGCA
GGCAACCCCGCCCAGCACAGGCCAATTCTTTGTGATGATGTCACCACAAGAAGTGTTACAGGGA
GGGAGCCAGCGGTCAATTGCCCCCAGGACCCACCCTTATTCCCCGAAGTCAGAGGCTCCCAGGA
CAACGCGAGATGAGAAACGGAGGGCTCAACATAACGAAGTGGAGCGCCGCCGCCGGGACAAGAT
CAACAACTGGATTGTACAGCTGTCCAAAATCATCCCAGACTGCTCTATGGAGAGCACCAAGTCT
GGCCAGAGTAAGGGTGGAATCCTGTCCAAAGCCTGTGACTATATCCAGGAACTACGTCAGAGCA
ACCACCGGCTGTCTGAAGAGCTGCAGGGGTTAGATCAGTTGCAGCTCGACAATGACGTGCTTCG
ACAGCAGGTGGAAGATCTTAAAAACAAGAACCTGCTACTACGAGCTCAGTTACGGCACCACGGA
TTAGAGGTCGTCATCAAGAATGACAGCAACTAACTGTGGGGACTCAGGGGCTTTGGGCCCGAGA
ACTGCACATAGCCCAGGAGCAACAGGCTGACCCCATGCCCCTCTCTTTCACTGCCTACTTCTGG
CGTGGGACTCGGGGGAGTTGGGCAAGTGTGATTTTGAACTGAGGCCTGTGGCATGGCAGTCTGC
AGTGAGTGCTGGGAAACCGTGTGGACACGCACCGCCAGCCTTGCCTGCCCCCACCGCGCAGTCC
CCGGGCCCTGGTGCTCCTTTGGCACACTGCATGTGCTGTCTCCTTGGTGGACACTGGACACACG
AAATCTGGGCTCGCCGCGTGCTTGCTTAGAGTGCCTGGCAGAGGGTCTGTGGGCCGAGTACTTC
ACTGGTTCTTCCTTTCTCTGAAGCAGAAGTTAAGATACATACCTGATTACTCTGGGGAGCAGGC
TTACTCAAGAGGTGGGGAAGGATGCTAGCGGGCTGCTCTCCCAGGAGTAGAGGGGGCAGTGAGC
AGCCGAAGCCTCTGCAGAAGGCCCTGGAGTCAGGGAGAGCTATAGGCAGGGCGGGTTCACAGAG
AGCCCGCCCTGTTCCAGGGGTGGTTCTTTTTATTTCTTTACTTTTTTTTTTTTTAAGATAAAAT
TGTTTAGAGCCACA

hide sequence

RefSeq Acc Id:

XM_008769765 ⟹ XP_008767987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,382,026 - 86,385,523 (+)	NCBI
mRatBN7.2	13	83,845,230 - 83,853,033 (+)	NCBI
Rnor_6.0	13	89,801,249 - 89,805,561 (+)	NCBI

Sequence:

show sequence

TTAGCATTCAGACCTTGGCGTCAGGAGATACGAGGTCCTCCAAAAAAAGACCAGTGCCTCGGAT
GAGCCCCCTCACAGAGAGATGAAGGGGCAGCAGAAAACAGCCGAAACCGAAGAGGGGACAGTGC
AGATTCAGGAAGGTGCAGTGGCTACTGGAGAGGACCCAACTAGTGTAGCTATCGCCAGCATCCA
ATCAGCTGCCACTTTCCCCGACCCCAACGTCAAGTGATGTACAGGGTGATCCAGGTGTCTGAGG
GGCAGCTGGATGGCCAGACAGAGGGCTCTGGCGCTATCAGTGGCTACCCTGCCACTCAGTCTAT
GACTCAGGCAGTAATCCAGGGGGCTTTCACCAGTGATGATGCTGTTGACGCGGAGGGAACAGCT
GCCGAGACCCACTACACTTACTTCCCCAGCACCGCAGTGGGAGATGGGTCAGGGGGTACGACAT
CTGGGAGTACAACCGCCGTGGTCACCACCCAGGGCTCAGAGGCACTGCTGGGGCAGGCAACCCC
GCCCAGCACAGGCCAATTCTTTGTGATGATGTCACCACAAGAAGTGTTACAGGGAGGGAGCCAG
CGGTCAATTGCCCCCAGGACCCACCCTTATTCCCCGAAGTCAGAGGCTCCCAGGACAACGCGAG
ATGAGAAACGGAGGGCTCAACATAACGAAGTGGAGCGCCGCCGCCGGGACAAGATCAACAACTG
GATTGTACAGCTGTCCAAAATCATCCCAGACTGCTCTATGGAGAGCACCAAGTCTGGCCAGAGT
AAGGGTGGAATCCTGTCCAAAGCCTGTGACTATATCCAGGAACTACGTCAGAGCAACCACCGGC
TGTCTGAAGAGCTGCAGGGGTTAGATCAGTTGCAGCTCGACAATGACGTGCTTCGACAGCAGGT
GGAAGATCTTAAAAACAAGAACCTGCTACTACGAGCTCAGTTACGGCACCACGGATTAGAGGTC
GTCATCAAGAATGACAGCAACTAACTGTGGGGACTCAGGGGCTTTGGGCCCGAGAACTGCACAT
AGCCCAGGAGCAACAGGCTGACCCCATGCCCCTCTCTTTCACTGCCTACTTCTGGCGTGGGACT
CGGGGGAGTTGGGCAAGTGTGATTTTGAACTGAGGCCTGTGGCATGGCAGTCTGCAGTGAGTGC
TGGGAAACCGTGTGGACACGCACCGCCAGCCTTGCCTGCCCCCACCGCGCAGTCCCCGGGCCCT
GGTGCTCCTTTGGCACACTGCATGTGCTGTCTCCTTGGTGGACACTGGACACACGAAATCTGGG
CTCGCCGCGTGCTTGCTTAGAGTGCCTGGCAGAGGGTCTGTGGGCCGAGTACTTCACTGGTTCT
TCCTTTCTCTGAAGCAGAAGTTAAGATACATACCTGATTACTCTGGGGAGCAGGCTTACTCAAG
AGGTGGGGAAGGATGCTAGCGGGCTGCTCTCCCAGGAGTAGAGGGGGCAGTGAGCAGCCGAAGC
CTCTGCAGAAGGCCCTGGAGTCAGGGAGAGCTATAGGCAGGGCGGGTTCACAGAGAGCCCGCCC
TGTTCCAGGGGTGGTTCTTTTTATTTCTTTACTTTTTTTTTTTTTAAGATAAAATTGTTTAGAG
CCACA

hide sequence

RefSeq Acc Id:

XM_063272640 ⟹ XP_063128710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,377,679 - 86,385,523 (+)	NCBI

RefSeq Acc Id:

XM_063272641 ⟹ XP_063128711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,377,847 - 86,385,523 (+)	NCBI

RefSeq Acc Id:

XM_063272642 ⟹ XP_063128712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,377,800 - 86,385,523 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417776	(Get FASTA)	NCBI Sequence Viewer
	NP_001417777	(Get FASTA)	NCBI Sequence Viewer
	NP_001417778	(Get FASTA)	NCBI Sequence Viewer
	NP_113965	(Get FASTA)	NCBI Sequence Viewer
	XP_006250328	(Get FASTA)	NCBI Sequence Viewer
	XP_008767987	(Get FASTA)	NCBI Sequence Viewer
	XP_063128710	(Get FASTA)	NCBI Sequence Viewer
	XP_063128711	(Get FASTA)	NCBI Sequence Viewer
	XP_063128712	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB82712	(Get FASTA)	NCBI Sequence Viewer
	AAH88849	(Get FASTA)	NCBI Sequence Viewer
	EDL94648	(Get FASTA)	NCBI Sequence Viewer
	EDL94649	(Get FASTA)	NCBI Sequence Viewer
	EDL94650	(Get FASTA)	NCBI Sequence Viewer
	EDL94651	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005811
	ENSRNOP00000005811.5

RefSeq Acc Id:

NP_113965 ⟸ NM_031777

- UniProtKB:

O35410 (UniProtKB/TrEMBL), A6JFZ3 (UniProtKB/TrEMBL), Q5HZX6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVI
QVSEGQLDGQTEGSGAISGYPATQSMTQAVIQGAFTSDDAVDAEGTAAETHYTYFPSTAVGDGS
GGTTSGSTTAVVTTQGSEALLGQATPPSTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAP
RTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQ
SNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN

hide sequence

RefSeq Acc Id:	XP_006250328 ⟸ XM_006250266
- Peptide Label:	isoform X1
- UniProtKB:	O35410 (UniProtKB/TrEMBL), A6JFZ3 (UniProtKB/TrEMBL), Q5HZX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVI QVSEGQLDGQTEGSGAISGYPATQSMTQAVIQGAFTSDDAVDAEGTAAETHYTYFPSTAVGDGS GGTTSGSTTAVVTTQGSEALLGQATPPSTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAP RTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQ SNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN hide sequence

RefSeq Acc Id:

XP_008767987 ⟸ XM_008769765

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYRVIQVSEGQLDGQTEGSGAISGYPATQSMTQAVIQGAFTSDDAVDAEGTAAETHYTYFPSTA
VGDGSGGTTSGSTTAVVTTQGSEALLGQATPPSTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYI
QELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN

hide sequence

Ensembl Acc Id:

ENSRNOP00000005811 ⟸ ENSRNOT00000005811

RefSeq Acc Id:	XP_063128710 ⟸ XM_063272640
- Peptide Label:	isoform X1
- UniProtKB:	A6JFZ3 (UniProtKB/TrEMBL), O35410 (UniProtKB/TrEMBL), Q5HZX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128712 ⟸ XM_063272642
- Peptide Label:	isoform X1
- UniProtKB:	A6JFZ3 (UniProtKB/TrEMBL), O35410 (UniProtKB/TrEMBL), Q5HZX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128711 ⟸ XM_063272641
- Peptide Label:	isoform X1
- UniProtKB:	A6JFZ3 (UniProtKB/TrEMBL), O35410 (UniProtKB/TrEMBL), Q5HZX6 (UniProtKB/TrEMBL)

Protein Domains

bHLH Rhodanese

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35410-F1-model_v2	AlphaFold	O35410	1-310	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699006

Promoter ID:

EPDNEW_R9531

Type:

initiation region

Name:

Usf1_1

Description:

upstream transcription factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	89,797,718 - 89,797,778	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620974	AgrOrtholog
BioCyc Gene	G2FUF-17368	BioCyc
Ensembl Genes	ENSRNOG00000004255	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005811	ENTREZGENE
	ENSRNOT00000005811.6	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
	Rhodanese-like domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7313699	IMAGE-MGC_LOAD
InterPro	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	HLH_DNA_bd	UniProtKB/TrEMBL
	Rhodanese-like_dom	UniProtKB/TrEMBL
	Rhodanese-like_dom_sf	UniProtKB/TrEMBL
	TSTD1_mml	UniProtKB/TrEMBL
	USF	UniProtKB/TrEMBL
KEGG Report	rno:83586	UniProtKB/TrEMBL
MGC_CLONE	MGC:105389	IMAGE-MGC_LOAD
NCBI Gene	83586	ENTREZGENE
PANTHER	FI24210P1	UniProtKB/TrEMBL
	THIOSULFATE:GLUTATHIONE SULFURTRANSFERASE	UniProtKB/TrEMBL
	THIOSULFATE:GLUTATHIONE SULFURTRANSFERASE	UniProtKB/TrEMBL
	UPSTREAM STIMULATORY FACTOR 1	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
	Rhodanese	UniProtKB/TrEMBL
PhenoGen	Usf1	PhenoGen
PROSITE	HLH	UniProtKB/TrEMBL
	RHODANESE_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004255	RatGTEx
SMART	HLH	UniProtKB/TrEMBL
	RHOD	UniProtKB/TrEMBL
Superfamily-SCOP	HLH_basic	UniProtKB/TrEMBL
	Rhodanese/Cell cycle control phosphatase	UniProtKB/TrEMBL
UniProt	A6JFZ3	ENTREZGENE, UniProtKB/TrEMBL
	A6JFZ4_RAT	UniProtKB/TrEMBL
	A6JFZ6	ENTREZGENE, UniProtKB/TrEMBL
	A6JFZ7	ENTREZGENE
	F7FDQ5	ENTREZGENE
	O35410	ENTREZGENE
	Q5HZX6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F7FDQ5	UniProtKB/TrEMBL
	O35410	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Usf1	upstream transcription factor 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Usf1	upstream transcription factor 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	transactivation enhanced by glucose	634232

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM