Prep (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 20 | 50,138,588 - 50,235,549 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 20 | 50,131,819 - 50,252,697 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 20 | 48,556,211 - 48,653,165 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 20 | 48,556,280 - 48,654,466 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 20 | 50,300,058 - 50,395,795 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 20 | 49,949,970 - 50,045,703 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 20 | 50,634,121 - 50,729,857 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 20 | 50,172,618 - 50,269,992 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 20 | 50,172,618 - 50,269,992 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 20 | 51,789,200 - 51,885,778 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 20 | 49,024,917 - 49,144,670 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 20 | 51,366,123 - 51,463,044 (-) | NCBI | | Celera | | | RGSC_v3.1 | 20 | 49,053,613 - 49,173,367 (+) | NCBI | | | | | Cytogenetic Map | 20 | q13 | NCBI | | | | |
|
PREP (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 6 | 105,273,218 - 105,403,082 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 105,273,218 - 105,454,062 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 6 | 105,721,093 - 105,850,957 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 105,832,199 - 105,957,662 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 105,832,198 - 105,957,662 | NCBI | | | | | Celera | 6 | 106,347,577 - 106,473,093 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | q21 | NCBI | | | | | HuRef | 6 | 103,168,797 - 103,294,318 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 105,987,432 - 106,112,999 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 106,448,949 - 106,578,910 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Prep (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 10 | 44,943,312 - 45,038,847 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 10 | 44,943,299 - 45,043,294 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 10 | 45,067,216 - 45,162,751 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 10 | 45,067,203 - 45,167,198 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 10 | 44,787,020 - 44,878,801 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 10 | 44,755,629 - 44,847,410 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 10 | 45,941,173 - 46,032,935 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | B2 | NCBI | | | | | cM Map | 10 | 23.27 | NCBI | | | | |
|
Prep (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955411 | 30,698,112 - 30,835,923 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955411 | 30,698,112 - 30,797,096 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
PREP (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 5 | 125,296,938 - 125,425,063 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 123,183,455 - 123,311,849 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 103,091,315 - 103,219,335 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 106,965,275 - 107,093,091 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 106,965,275 - 107,091,278 (-) | Ensembl | | | panPan2 | panpan1.1 |
|
PREP (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 12 | 62,709,158 - 62,821,247 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 12 | 62,709,434 - 62,829,084 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 12 | 62,497,580 - 62,615,079 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 12 | 63,560,860 - 63,678,389 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 12 | 63,560,878 - 63,680,592 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 12 | 62,915,128 - 63,032,788 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 12 | 62,756,480 - 62,874,410 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 12 | 63,035,919 - 63,153,927 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
|
Prep (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024404946 | 97,669,412 - 97,787,348 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936564 | 1,944,245 - 2,062,262 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936564 | 1,944,245 - 2,062,178 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
PREP (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 1 | 71,496,306 - 71,636,747 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 71,496,299 - 72,027,308 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 80,817,291 - 80,892,385 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
PREP (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 13 | 68,406,298 - 68,536,166 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 13 | 68,406,452 - 68,536,234 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666040 | 40,749,136 - 40,882,911 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Prep (Heterocephalus glaber - naked mole-rat) |
|
Prep (Rattus rattus - black rat) |
|