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Gene: Epha5 (EPH receptor A5) Rattus norvegicus

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Symbol:

Epha5

Name:

EPH receptor A5

RGD ID:

620831

Description:

Enables ephrin receptor activity and growth factor binding activity. Involved in axonal fasciculation; dendritic spine morphogenesis; and ephrin receptor signaling pathway. Acts upstream of or within negative regulation of cell adhesion. Located in axon and plasma membrane. Orthologous to human EPHA5 (EPH receptor A5); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH (+)-pilocarpine; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

eck-like sequence 1; EHK-1; Els1; Els1.; EPH homology kinase 1; ephrin type-A receptor 5; tyrosine-protein kinase receptor EHK-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EPHA5 (EPH receptor A5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Epha5 (Eph receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Epha5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EPHA5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EPHA5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Epha5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EPHA5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EPHA5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Epha5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Epha5 (EPH receptor A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Epha5 (Eph receptor A5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Epha5 (Eph receptor A5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EPHA5 (EPH receptor A5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Eph	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Eph	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vab-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	epha5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl				GRCr8
mRatBN7.2	14	23,653,393 - 24,020,129 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	23,653,393 - 24,017,317 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	23,956,543 - 24,317,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	25,268,992 - 25,630,263 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	23,801,211 - 24,162,478 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	24,245,431 - 24,606,295 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	24,343,456 - 24,704,307 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	24,351,450 - 24,712,312 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	24,341,071 - 24,721,248 (+)	NCBI		F344_StmMcwi
Rnor_6.0	14	25,589,312 - 25,958,258 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	25,589,762 - 25,958,227 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	25,417,590 - 25,788,026 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	25,524,170 - 25,896,798 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	23,059,394 - 23,424,647 (+)	NCBI		Celera
RGSC_v3.1	14	25,256,413 - 25,884,513 (+)	NCBI
Cytogenetic Map	14	p21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

malignant astrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-pilocarpine (EXP)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

clofibrate (ISO)

cocaine (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dichromium trioxide (ISO)

ethanol (ISO)

folic acid (ISO)

glycidol (EXP)

indometacin (EXP)

lead diacetate (ISO)

lithium chloride (EXP)

melphalan (ISO)

miconazole (ISO)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

pioglitazone (ISO)

ponatinib (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ development (IEA)

axon guidance (IBA,ISO,ISS)

axonal fasciculation (IDA)

cell surface receptor protein tyrosine kinase signaling pathway (IEA)

cellular response to follicle-stimulating hormone stimulus (ISO)

cellular response to forskolin (ISO)

cellular response to oxygen-containing compound (IEA)

central nervous system development (IEA)

dendritic spine morphogenesis (IDA)

ephrin receptor signaling pathway (IBA,IDA,IEA,ISO)

hippocampus development (ISO,ISS)

negative regulation of cell adhesion (IDA)

negative regulation of insulin secretion involved in cellular response to glucose stimulus (ISO,ISS)

nervous system development (IEA)

neuron development (ISO)

neuron projection development (IEA)

Cellular Component

adherens junction (ISO)

axon (IDA,IEA)

cell periphery (ISO)

dendrite (IBA,IEA,ISO,ISS)

external side of plasma membrane (ISO)

insulin-responsive compartment (ISO,ISS)

membrane (IEA)

neuronal cell body (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (IBA,IDA,IEA,ISO,ISS)

rough endoplasmic reticulum (ISO)

Molecular Function

ATP binding (IEA)

ephrin receptor activity (IDA,IEA,ISO)

GPI-linked ephrin receptor activity (ISO,ISS)

growth factor binding (IPI)

kinase activity (IEA)

nucleotide binding (IEA)

protein binding (IPI,ISO)

protein kinase activity (IEA)

protein tyrosine kinase activity (IEA)

transferase activity (IEA)

transmembrane receptor protein tyrosine kinase activity (IEA)

transmembrane-ephrin receptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

ephrin - ephrin receptor bidirectional signaling axis (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Ephrin-A5 and EphA5 interaction induces synaptogenesis during early hippocampal development.	Akaneya Y, etal., PLoS One. 2010 Aug 31;5(8):e12486. doi: 10.1371/journal.pone.0012486.
2.	The ephrin signaling pathway regulates morphology and adhesion of mouse granulosa cells in vitro.	Buensuceso AV and Deroo BJ, Biol Reprod. 2013 Jan 31;88(1):25. doi: 10.1095/biolreprod.112.100123. Print 2013 Jan.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Ehk-1 and Ehk-2: two novel members of the Eph receptor-like tyrosine kinase family with distinctive structures and neuronal expression.	Maisonpierre PC, etal., Oncogene 1993 Dec;8(12):3277-88.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Profiling Eph receptor expression in cells and tissues: a targeted mass spectrometry approach.	Noberini R, etal., Cell Adh Migr. 2012 Mar-Apr;6(2):102-12. doi: 10.4161/cam.19620. Epub 2012 Mar 1.
8.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Expression and developmental regulation of Ehk-1, a neuronal Elk-like receptor tyrosine kinase in brain.	Taylor V, etal., Neuroscience 1994 Nov;63(1):163-78.
12.	Cloning of AL-1, a ligand for an Eph-related tyrosine kinase receptor involved in axon bundle formation.	Winslow JW, etal., Neuron 1995 May;14(5):973-81.

Additional References at PubMed

PMID:9191074	PMID:10064801	PMID:10375373	PMID:12124402	PMID:17448994	PMID:19036963	PMID:24222347	PMID:26109526	PMID:29237529	PMID:29330744

Genomics

Comparative Map Data

Epha5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl				GRCr8
mRatBN7.2	14	23,653,393 - 24,020,129 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	23,653,393 - 24,017,317 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	23,956,543 - 24,317,814 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	25,268,992 - 25,630,263 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	23,801,211 - 24,162,478 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	24,245,431 - 24,606,295 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	24,343,456 - 24,704,307 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	24,351,450 - 24,712,312 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	24,341,071 - 24,721,248 (+)	NCBI		F344_StmMcwi
Rnor_6.0	14	25,589,312 - 25,958,258 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	25,589,762 - 25,958,227 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	25,417,590 - 25,788,026 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	25,524,170 - 25,896,798 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	23,059,394 - 23,424,647 (+)	NCBI		Celera
RGSC_v3.1	14	25,256,413 - 25,884,513 (+)	NCBI
Cytogenetic Map	14	p21	NCBI

EPHA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	65,319,567 - 65,670,489 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	65,319,563 - 65,670,495 (-)	Ensembl			hg38	GRCh38
GRCh37	4	66,185,285 - 66,536,207 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	65,872,241 - 66,218,104 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	63,644,911 - 63,993,769 (-)	NCBI		Celera
Cytogenetic Map	4	q13.1-q13.2	NCBI
HuRef	4	62,095,699 - 62,445,869 (-)	NCBI		HuRef
CHM1_1	4	66,222,199 - 66,573,162 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	68,756,500 - 69,108,844 (-)	NCBI		T2T-CHM13v2.0

Epha5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	84,199,024 - 84,565,677 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	84,202,620 - 84,565,241 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	84,054,761 - 84,417,818 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	84,054,761 - 84,417,382 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	84,483,786 - 84,846,407 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	85,132,352 - 85,491,482 (-)	NCBI		MGSCv36	mm8
Celera	5	81,291,528 - 81,651,176 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.0	NCBI

Epha5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	7,066,111 - 7,382,046 (+)	Ensembl
ChiLan1.0	NW_004955447	7,066,111 - 7,382,046 (+)	NCBI	ChiLan1.0	ChiLan1.0

EPHA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	64,222,358 - 64,574,467 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	64,447,417 - 64,799,360 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	58,392,771 - 58,743,604 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	64,767,083 - 65,113,510 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

EPHA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	56,054,247 - 56,402,583 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	56,058,800 - 56,383,301 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	55,969,239 - 56,314,376 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	56,669,158 - 57,015,552 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	56,671,834 - 57,016,808 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	56,388,025 - 56,733,358 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	55,892,815 - 56,238,437 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	56,885,964 - 57,231,303 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Epha5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	19,941,499 - 20,271,236 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936582	2,505,145 - 2,830,014 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936582	2,503,546 - 2,832,950 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPHA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	63,287,711 - 63,604,734 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	63,285,006 - 63,604,734 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	67,246,392 - 67,540,677 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPHA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	3,219,396 - 3,564,416 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	3,219,449 - 3,559,854 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666066	3,415,672 - 3,777,756 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Epha5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	3,693,540 - 4,048,953 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624761	3,693,462 - 4,050,426 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Epha5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	40,535,752 - 40,889,501 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Epha5
3727 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1701
Count of miRNA genes:	263
Interacting mature miRNAs:	320
Transcripts:	ENSRNOT00000002793, ENSRNOT00000042149, ENSRNOT00000043938, ENSRNOT00000047290, ENSRNOT00000065394, ENSRNOT00000067439
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631528	Scl11	Serum cholesterol level QTL 11	4.9		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	14	17875645	36079022	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11334906	30674469	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	28389666	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3957878	31121464	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3957878	24886169	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	15137594	31238250	Rat

Markers in Region

D14Hmgc6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	23,685,539 - 23,685,694 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	23,685,539 - 23,685,855 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	23,685,571 - 23,685,694 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,622,244 - 25,622,398	NCBI	Rnor6.0
Rnor_6.0	14	25,622,244 - 25,622,682	NCBI	Rnor6.0
Rnor_5.0	14	25,451,582 - 25,452,020	UniSTS	Rnor5.0
Rnor_5.0	14	25,451,582 - 25,451,736	UniSTS	Rnor5.0
RGSC_v3.4	14	25,556,517 - 25,556,671	UniSTS	RGSC3.4
RGSC_v3.4	14	25,556,516 - 25,556,671	RGD	RGSC3.4
Celera	14	23,091,473 - 23,091,627	UniSTS
Cytogenetic Map	14	p21	UniSTS

RH131857

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	23,654,973 - 23,655,193 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,591,348 - 25,591,567	NCBI	Rnor6.0
Rnor_5.0	14	25,419,680 - 25,419,899	UniSTS	Rnor5.0
RGSC_v3.4	14	25,525,751 - 25,525,970	UniSTS	RGSC3.4
Celera	14	23,060,975 - 23,061,194	UniSTS
Cytogenetic Map	14	p21	UniSTS

AW531504

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	23,948,852 - 23,949,029 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,886,078 - 25,886,254	NCBI	Rnor6.0
Rnor_5.0	14	25,715,317 - 25,715,493	UniSTS	Rnor5.0
RGSC_v3.4	14	25,825,316 - 25,825,492	UniSTS	RGSC3.4
Celera	14	23,353,273 - 23,353,449	UniSTS
Cytogenetic Map	14	p21	UniSTS

BE110064

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	24,018,345 - 24,018,512 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,956,469 - 25,956,635	NCBI	Rnor6.0
Rnor_5.0	14	25,786,237 - 25,786,403	UniSTS	Rnor5.0
RGSC_v3.4	14	25,895,010 - 25,895,176	UniSTS	RGSC3.4
Celera	14	23,422,858 - 23,423,024	UniSTS
Cytogenetic Map	14	p21	UniSTS

UniSTS:266988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	24,007,760 - 24,007,912 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,945,114 - 25,945,265	NCBI	Rnor6.0
Rnor_5.0	14	25,774,882 - 25,775,033	UniSTS	Rnor5.0
RGSC_v3.4	14	25,884,209 - 25,884,360	UniSTS	RGSC3.4
Celera	14	23,412,268 - 23,412,419	UniSTS
Cytogenetic Map	14	p21	UniSTS

UniSTS:495883

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	23,653,448 - 23,653,687 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	25,589,823 - 25,590,061	NCBI	Rnor6.0
Rnor_5.0	14	25,418,155 - 25,418,393	UniSTS	Rnor5.0
RGSC_v3.4	14	25,524,226 - 25,524,464	UniSTS	RGSC3.4
Celera	14	23,059,450 - 23,059,688	UniSTS
Cytogenetic Map	14	p21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	5	32	144	63	61	31	84	31	5	225	138	2	131	38	85	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001169137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_024367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X78689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002793 ⟹ ENSRNOP00000002793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl
mRatBN7.2 Ensembl	14	23,653,393 - 24,017,317 (+)	Ensembl
Rnor_6.0 Ensembl	14	25,589,767 - 25,958,227 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000043938 ⟹ ENSRNOP00000043926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl
mRatBN7.2 Ensembl	14	23,653,393 - 24,017,317 (+)	Ensembl
Rnor_6.0 Ensembl	14	25,589,762 - 25,945,398 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000067439 ⟹ ENSRNOP00000062326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl
mRatBN7.2 Ensembl	14	23,653,393 - 24,008,122 (+)	Ensembl
Rnor_6.0 Ensembl	14	25,589,767 - 25,945,398 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100109 ⟹ ENSRNOP00000085420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl
mRatBN7.2 Ensembl	14	23,653,393 - 24,017,317 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127030 ⟹ ENSRNOP00000105927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	24,008,122 - 24,374,848 (+)	Ensembl

RefSeq Acc Id:

NM_001169137 ⟹ NP_001162608

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,008,122 - 24,374,848 (+)	NCBI
mRatBN7.2	14	23,653,393 - 24,020,129 (+)	NCBI
Dahl_SR_JrHsd	14	24,245,431 - 24,606,295 (+)	NCBI
Lyon_Normotensive	14	24,343,456 - 24,704,307 (+)	NCBI
Lyon_Hypertensive	14	24,351,450 - 24,712,312 (+)	NCBI
F344_StmMcwi	14	24,341,071 - 24,721,248 (+)	NCBI
Rnor_6.0	14	25,589,767 - 25,958,258 (+)	NCBI
Rnor_5.0	14	25,417,590 - 25,788,026 (+)	NCBI
RGSC_v3.4	14	25,524,170 - 25,896,798 (+)	RGD
Celera	14	23,059,394 - 23,424,647 (+)	NCBI

Sequence:

show sequence

AAATAACAGTTCTAAAAAAGAAAGGGGGACCAAAAAACAGAAAAAGGAAAGTCTTAAGAGGCAA
AGGAGCGGGACTCGGGACCCTCTGCAGACCCTTGACTCAGCCCACCCAGGACCGTACTAGCCAT
CCGAACTTCTAATTCATCTTATCCAACTGAAAGGGAGGGCGGCACAAGCCAGAAGCAAACTTCG
GCGGTCTCTGCGGATCTGTGATTCCCACATTGAGAGGGGTCGAGAGCCAGAAGGCACAGGACCC
CACCAGGAGGAGGAGTTCCGCGCCTCTCTCGCCCCTTCCACCAAGCCTGAACCTTAGACTGAAC
CACGCGGGACCTAAGAGGCAGAAGAGGGTAGTAGAAAATGCGGGGCTCCGGGCCCCGCGGTGCG
GGACGCCGACGGACCCAGGGCAGAGGTGGCGGCGGCGACACCCCCCGCGTCCCTGCCTCTCTGG
CAGGCTGCTATTCCGCACCTCTAAAGGGGCCCCTCTGGACGTGCCTTCTCCTGTGTGCGGCGCT
CCGGACCCTTTTGGCCAGCCCCAGTAACGAAGTGAATTTATTGGATTCGCGCACTGTCCTGGGA
GACCTTGGATGGATTGCTTTTCCAAAGAATGGGTGGGAAGAGATTGGTGAAGTTGATGAAAACT
ATGCCCCCATCCACACCTATCAAGTGTGCAAAGTTATGGAACAGAATCAGAATAATTGGCTGTT
GACCAGTTGGATCTCTAACGAAGGTGCTTCCAGAATTTTTATTGAACTCAAGTTTACTCTGAGG
GATTGCAACAGCCTTCCTGGAGGACTGGGGACTTGCAAGGAGACCTTTAACATGTATTATTTTG
AGTCGGATGATGAGAATGGGAGAAATATCAAAGAGAACCAGTACATCAAGATCGATACCATTGC
TGCTGATGAGAGCTTCACCGAACTTGACCTTGGAGACCGGGTCATGAAGCTGAATACGGAGGTC
AGAGATGTAGGACCTCTGAGCAAAAAGGGATTTTATCTTGCTTTCCAAGATGTCGGTGCTTGCA
TCGCTCTGGTTTCTGTCCGTGTCTACTATAAAAAATGTCCTTCTGTAGTTAGACATTTGGCTGT
TTTCCCTGACACGATCACTGGAGCAGATTCTTCCCAGTTGCTAGAGGTGTCAGGCTCCTGCGTC
AACCATTCTGTGACAGACGATCCTCCCAAAATGCATTGCAGTGCTGAAGGGGAGTGGCTGGTTC
CCATCGGGAAATGCATGTGCAAGGCCGGATATGAAGAGAAAAATGGTACCTGTCAAGTGTGCAG
ACCTGGGTTCTTCAAAGCCTCTCCTCACAGCCAGACCTGCAGCAAATGTCCACCTCACAGTTAC
ACCCATGAGGAAGCTTCCACCTCTTGTGTCTGTGAAAAGGATTATTTCAGGAGGGAATCTGATC
CGCCCACAATGGCATGCACAAGACCCCCCTCAGCTCCTCGGAATGCCATCTCAAATGTTAATGA
AACTAGTGTCTTTCTGGAGTGGATTCCTCCTGCTGACACTGGTGGACGGAAAGATGTGTCCTAT
TACATTGCATGCAAGAAGTGCAACTCCCATGCAGGTGTGTGTGAGGAGTGTGGCGGTCATGTCA
GGTACCTCCCCCAGCAAATCGGCCTGAAAAATACCTCTGTCATGATGGCGGACCTCCTTGCTCA
CACAAACTATACCTTTGAAATTGAGGCAGTGAACGGAGTTTCCGACTTGAGTCCAGGCACCCGG
CAGTATGTGTCTGTAAATGTAACCACGAACCAAGCAGCTCCTTCTCCAGTCACCAACGTGAAGA
AGGGGAAGATCGCAAAGAACAGCATTTCTTTGTCTTGGCAAGAGCCAGATCGCCCCAATGGGAT
CATCCTGGAGTACGAAATCAAGTACTTTGAAAAGGACCAAGAGACCAGCTACACAATTATCAAG
TCTAAAGAGACCACTATTACGGCAGAGGGCCTGAAACCTGCGTCTGTGTATGTCTTCCAAATTC
GAGCACGTACAGCAGCAGGCTACGGCGTCTTCAGTCGACGGTTTGAGTTTGAAACCACACCAGT
GTTTGCAGCATCTAATGATCAAAGCCAGATTCCCATCATTGCGGTGTCAGTGACGGTGGGAGTC
ATCTTGTTGGCAGTGATGATCGGCTTCCTCCTCAGTGGCAGTTGCTGCGAATGTGGCTGTGGGA
GGGCTTCTTCCCTGTGCGCTGTTGCCCATCCAAGCCTAATATGGCGGTGTGGCTACAGCAAAGC
AAAGCAGGATCCAGAAGAGGAAAAGATGCACTTTCATAACGGGCACATTAAACTGCCAGGAGTA
AGAACGTACATTGATCCACACACCTACGAAGATCCCACTCAAGCCGTTCATGAATTTGCCAAGG
AGATCGAGGCCTCATGCATCACCATTGAGAGAGTTATTGGAGCAGGTGAATTTGGTGAAGTTTG
TAGTGGACGTTTGAAACTACCCGGAAAAAGAGAATTGCCTGTGGCTATCAAAACTCTTAAAGTA
GGCTACACTGAAAAGCAGCGCAGAGATTTTCTGAGTGAAGCGAGTATCATGGGGCAGTTTGATC
ATCCAAACATCATCCATCTAGAAGGCGTTGTGACTAAAAGTAAACCTGTGATGATAGTGACAGA
GTACATGGAGAATGGCTCCTTAGACACATTTTTAAAGAAAAACGATGGCCAGTTCACTGTGATT
CAGCTTGTTGGCATGCTGAGAGGCATCGCTGCAGGAATGAAGTACCTTTCTGACATGGGCTACG
TGCACAGAGACCTTGCTGCTAGAAACATCTTAATCAACAGTAACCTTGTGTGCAAAGTGTCTGA
CTTTGGACTTTCCAGGGTGCTGGAAGATGATCCTGAGGCAGCCTATACCACAAGGGGAGGCAAA
ATTCCAATCAGGTGGACTGCTCCAGAAGCAATAGCTTTTCGAAAGTTTACCTCTGCCAGTGATG
TCTGGAGCTATGGAATCGTAATGTGGGAAGTTGTGTCCTATGGAGAGAGACCGTACTGGGAGAT
GACCAATCAGGATGTGATCAAGGCAGTGGAAGAAGGCTACCGCCTGCCAAGCCCCATGGATTGT
CCTGCTGCCCTCTATCAATTAATGCTGGATTGCTGGCAGAAAGATCGCAACAGCAGGCCCAAGT
TTGATGACATAGTCAACATGCTGGATAAGCTGATACGAAACCCAAGTAGTTTGAAGACACTGGT
GAACGCGTCAAGCAGGGTATCTACTTTGTTGGCAGAACATGGATCTTTGGGGTCTGGGGCCTAC
AGATCAGTAGGTGAATGGCTAGAAGCAATCAAAATGGGCCGGTACACAGAGATTTTCATGGAAA
ATGGATACAGTTCAATGGACGCTGTGGCTCAGGTGACCTTGGAGGATTTGAGACGCCTGGGAGT
GACTCTGGTCGGTCACCAGAAGAAGATCATGAACAGCCTTCAAGAGATGAAGGTGCAGCTGGTA
AACGGGATGGTGCCAGTGTGACCCGCACACGGGTCACTTCTCCAAGTGAACAACTCTGCACTTT
GTAAACAGCCCTAAGATTTATTTTAACAGAGAAAGGGAAATGGGTGGTTCCTAAACCTTTGAAG
GCACTTGTCTCATCCTTTGAACTTATAATCAACATTTTACTAAAATCTCCAGATCTTCTTCTTA
ATGTCTTCGTTTTTTTCACTATGTAAATGTAACCTGCGAAGAGAGCTAACATGAGAAACAACAT
CCTATAAAAACATAGTAACTAAATCTTTCTCCACTTCTTCCACGGAATCTTGTACATGAAATAT
ATCAAGACACAGAACCTATAGAGACTGTTAAGGCAGCCCCTTTCAAAACTACCAGGGATCGACT
TGAAAGGAAAAGTTTTAAAGCCATGTGTGGGCAAAGAAACGCTGCATTTTACTGACGTTTACTT
CGAGTTTTATTTGTCTGCATAAGTGTATTGGAGAGCAATATGATTAGATTATTTCTTAAATACA
GTTTGTAATTTAAAATGGAATTACATGTTATAAGTTATAGAAAATAGTTTATAGACATGTTGCC
CGGTCAAGGAAAAGTTCAGCACAGGGTGTATATTTATTTTTCTGTGTTATATAATTTACTTTTA
GTTGCACTTCTAGAGAGTATTAGGCAATGAATGTGTATAGACTGTATAGTTTGCAATATACCGA
GGAATGGACTTAAATTGGAAATGTATGTATATGTGTGTGTATGTGCGTATGTGTGTGTGTGTTT
GAATATGTAGATGGTATTGTTCTGCTTGCCTTTTGTATAGGGTTTTAATTTTGGCCTCATACAG
CAAAGGGTGTTCTAGACTATTTTATGGGTAAGAGGAATAGGAAGCCTTAGACCAAATTTCCACT
CAAGTAGGTGTCCTTTCTCTCATTTTGAAAGCAACTAATTAGTTTATTTAAACAGCTAATGCCT
CTAGATTAAATTCCCTTTGGATTTTACACATACCCAACCTATGCGTGATAAAGAAGTTCTCGCC
ATTAATCTTTCATGTTTCTTCCAAATTCGACCTTTCAAAGTTCCTGAAAATATCTTCTCAAGCT
GACACAAAGGGCACACGTTGTGTCATAGAATGTAGAGAGTTGTGATTGTAGTGGCATCTGTGAA
CATCCAATCCAGGCAGAGGTACTCAAAATCTCCCTGCATGCCCTAACCATTTGTAGTCACTCCC
CTTATGACTCATTCACAGAGAGTTTAATACTAAGACAGCATTAAAAAGTGAAGTAAAAAATGTT
TTGCTCAGAATTTTCTGTTTGAACTTTGTTTCTCCTTGGTAACAGTTTGTGCACATCTTGTCCT
CCATTACAGTGAATATGTTTGGAAAAACCAATGGGGAGTATTTTAAAAAATTAGAATTTTTAGG
TAGTTTACAATAGTCCTTCAGTATTCTCAAGCTGACACAAAGGGCACACGTTGTGTCATAGAAT
GTAGAGAGTTGTGATTGTAGTGGCATCTGTGAACATCCAATCCAGGCAGAGGTACTCAAAATCT
CCCTGCATGCCCTAACCATTTGTAGTCACTCCCCTTATGACTCATTCACAGAGAGTTTAATACT
AAGACAGCATTAAAAAGTGAAGTAAAAAATGTTTTGCTCAGAATTTTCTGTTTGAACTTTGTTT
CTCCTTGGTAACAGTTTGTGCACATCTTGTCCTCCATTACAGTGAATATGTTTGGAAAAACCAA
TGGGGAGTATTTTAAAAAATTAGAATTTTTAGGTAGTTTACAATAGTCCTTCAGTATATTTTAT
ATACTACATCAGAAAAGGGCTGACATTTATGGAAAATCCATGTGGTTTATTGAAATGTTCACTT
AAGTGACCATGATGGTAAGATGAAAAATATTTTATATTATTATGCTTTATAAAATCTGGAGAAT
GGTATACAATATTTTGAGGAGCCAAGAACTTATATCAGGACTTTCACTACTGCATGGGAAAAAC
CATGTGAGCAGAGTGAGATCTACAGGGGGGAGGCCAGTATTTTGTGAGGAGTACGCCTTTATTC
TTACTAAGATACGTTTCACTTCAGTATTCACCCATATAAGGAAGACAATTGGGGAACTTACTAT
TTATCTCCCACCCCCATTTTTTAAAAGGAGAAATAGCTCCTTGATAAATAAGGAAAGATCAAAG
TTGCAAAAGGATGTGAAGCATCTAAACAGTTTTTATATTATACATTGATTCCCCTCTCCGAATA
ACACTGATCCCACAATGTGCTCAAGAAATGTGGAAGTGACACTTTCAGAAAATACTAAGAGTAG
TTTAATACTATGTTGGTAAAAAAAAATCACAGAGAGATGTCAGTATGAAAATACATTTACATAA
AATCATTGAAACTAATTACTACTGTACAGATAAATTCATTGGAATCTAAGTGATACAGTAGTAC
TGAGAACTTCAAGACCGAACAAAAATACAAAACATTTACACATGTGTGATTTAGAGCTCGTACA
ACGCACAACTATATGGACATCAAAAATACATTCTAATTTGTTTTCTAACTTTGTATGGTATAAT
TGGTAAGGTCTAGCTGTTAGACTGATGATTTCATTTTTTCCCCATAGAATATTAGGTCACTTAC
TTCCCTTTGCAATTCAAGTGTTACATTTGGAGAGCAATTCAGAAGCTCTATGGCCACATGGCGT
TCATCCACGCCTCAATTTGGTTGAGGGTTTCTAAAGACTGTCACTCTGATTTTCAAATAAACAG
ACCTTTAAATTGTAAGTGCTCTGTCCCTCAAAGAAGAGAGAGCACCTTTCTAAAATATTTGTTC
ACCACTGGATATGTCACCCATTGAAAAGTGCCAAACTCATCGATCAATGTGAGAAATGCAGCTG
GAAGGGAAGCCAGCTCTCGTACGATGTAACGAGGCTGCCACTCAGCACAAGACTGGGTACATTC
TCATGGTGTGGATTTTCTTCTTGTGGCTTCATTTCCTTACTCATGGACTCCCCAAAATAAAGCA
TAAGATTCCATAATCTCCACACGTATAACTGATTTGTAAAATGATATTTAACTGGATTGTCAGA
AGGAACAACGGGGAACTTTCCTATTTGAAGTCATTCCGTTACTGTGGTTTATCAATCATAATTT
ATACCCACTCTTGCCATTCCCTAGCATGTGACAATTTTTTCCTCTTTCAAATGTATCGATTGTA
TGTGAAATATAGAGATGCTGATTTTCACCGTTTAAAAAAAATTATGACATGCATGTGTTTTAAA
TTCCTGTGTTTTGTTAACCAAGCCAGTGTTCTAAAGTAATAGGTTCATGTTACAATTTAAATAG
GAATATTTCATCAGAACTTCAGTGCGTCTAGACTTTTGGAATCGTCACAAATAAAGGAAAACAC
ACTTAGCTCTTTTTATCAAAACAGTTCTACCCACTATGTAATTAAAGAGCTGTAACTTCACATC
TCCGGTTAAGTGGAGCAGTTACTGTCGGTTGAGCACTGCATTTGCATGTCTGCTGTTTAAATTT
TACGTGGAAGTGAAAGGCAGTAAAGAAGATATTTGTACACCCATTGAAGTGGGTTTTCAGAAGC
ACAATGAAAAATATTCACCTTTGGAACGTGTTCTGGCTGTAATGGTATGTTAGATAACAAAGAG
CGTGTGGTGTAGAGACTCAGTAGGTATATGGTGTTGCATAGTAGTAAATATCTCTTTCTTATTT
TGTTCTTTCTAAAATCTAAGTGGGAAAGTACATGTGATGATGAAATATCTTTGTTTAAACTTTG
CCAGACGTTTAACCTCAATGTAAATAAAATATAGGATAATACGATGGCGGTTGATGATCCTAAC
GAACGAATGAACAGAATCAGAATGGTAGCTTTATTTGAAATTTGATAGCTGAACAAGTCATCAC
TTTTTTTCTTCTGTGCAGTAGCACAGCTGGTTACATTGAATATTTTTCCTCCATTATGCTGTTA
ATTATACAGTAATGTATCAGGAAAGAAATAGATAAAAAAAACTTTCTGCTTGTATCTTGTTATT
TTCTGAGTCTTTTCACACATCAACGATTGAATGTTCTTATTCAGAATGACCACGTAATTGTCGC
ATAGAAGAAGCTGCTATTTCTTTTTAAAATGTCTGTTTATAATAACCAGACTCAAATTCATTTT
CTCAATGTTAATAGGGGAAAAATGTTGGCAAAAATACATCCCGTCTTTGCAAGCTGGGTGCTAT
ATTCACTGAAGTTTGAGTGGTCAATTATTTGTGAATATTTAGACTACTGCAGTTTTCGATTAAT
TATTTAAAAGCATATATATACTGAATTTGTAACAGTCAGAGAATAAAGTCAGACTCTGTCCTTT
GTGAATATGTTGATCAACATCACATGGTTTCGGGCAGGTCAGAGACATCCATGCAGCCTGTCCG
ATTCTTTGGTAGGCATCAGGAAATCTTGTGTCCCTACCTCAGAGTGAATTCAGGAAGGATGAAC
AGTTTTGTATTGGTTTCCATCTGCGTCTCTTTGTGCTTTCAGTTTGTGTACATGTTTTTTGTAG
TGTAAGATATTAAATTTTATATTTTTTCAGAAAATAAAAAACATTTGAATATAGAAAAA

hide sequence

RefSeq Acc Id:

NM_024367 ⟹ NP_077343

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,008,122 - 24,362,841 (+)	NCBI
mRatBN7.2	14	23,653,393 - 24,008,122 (+)	NCBI
Dahl_SR_JrHsd	14	24,245,431 - 24,594,274 (+)	NCBI
Lyon_Normotensive	14	24,343,456 - 24,692,286 (+)	NCBI
Lyon_Hypertensive	14	24,351,450 - 24,700,291 (+)	NCBI
F344_StmMcwi	14	24,341,071 - 24,709,211 (+)	NCBI
Rnor_6.0	14	25,589,767 - 25,945,423 (+)	NCBI
Rnor_5.0	14	25,417,590 - 25,788,026 (+)	NCBI
RGSC_v3.4	14	25,524,170 - 25,896,798 (+)	RGD
Celera	14	23,059,394 - 23,412,577 (+)	NCBI

Sequence:

show sequence

AAATAACAGTTCTAAAAAAGAAAGGGGGACCAAAAAACAGAAAAAGGAAAGTCTTAAGAGGCAA
AGGAGCGGGACTCGGGACCCTCTGCAGACCCTTGACTCAGCCCACCCAGGACCGTACTAGCCAT
CCGAACTTCTAATTCATCTTATCCAACTGAAAGGGAGGGCGGCACAAGCCAGAAGCAAACTTCG
GCGGTCTCTGCGGATCTGTGATTCCCACATTGAGAGGGGTCGAGAGCCAGAAGGCACAGGACCC
CACCAGGAGGAGGAGTTCCGCGCCTCTCTCGCCCCTTCCACCAAGCCTGAACCTTAGACTGAAC
CACGCGGGACCTAAGAGGCAGAAGAGGGTAGTAGAAAATGCGGGGCTCCGGGCCCCGCGGTGCG
GGACGCCGACGGACCCAGGGCAGAGGTGGCGGCGGCGACACCCCCCGCGTCCCTGCCTCTCTGG
CAGGCTGCTATTCCGCACCTCTAAAGGGGCCCCTCTGGACGTGCCTTCTCCTGTGTGCGGCGCT
CCGGACCCTTTTGGCCAGCCCCAGTAACGAAGTGAATTTATTGGATTCGCGCACTGTCCTGGGA
GACCTTGGATGGATTGCTTTTCCAAAGAATGGGTGGGAAGAGATTGGTGAAGTTGATGAAAACT
ATGCCCCCATCCACACCTATCAAGTGTGCAAAGTTATGGAACAGAATCAGAATAATTGGCTGTT
GACCAGTTGGATCTCTAACGAAGGTGCTTCCAGAATTTTTATTGAACTCAAGTTTACTCTGAGG
GATTGCAACAGCCTTCCTGGAGGACTGGGGACTTGCAAGGAGACCTTTAACATGTATTATTTTG
AGTCGGATGATGAGAATGGGAGAAATATCAAAGAGAACCAGTACATCAAGATCGATACCATTGC
TGCTGATGAGAGCTTCACCGAACTTGACCTTGGAGACCGGGTCATGAAGCTGAATACGGAGGTC
AGAGATGTAGGACCTCTGAGCAAAAAGGGATTTTATCTTGCTTTCCAAGATGTCGGTGCTTGCA
TCGCTCTGGTTTCTGTCCGTGTCTACTATAAAAAATGTCCTTCTGTAGTTAGACATTTGGCTGT
TTTCCCTGACACGATCACTGGAGCAGATTCTTCCCAGTTGCTAGAGGTGTCAGGCTCCTGCGTC
AACCATTCTGTGACAGACGATCCTCCCAAAATGCATTGCAGTGCTGAAGGGGAGTGGCTGGTTC
CCATCGGGAAATGCATGTGCAAGGCCGGATATGAAGAGAAAAATGGTACCTGTCAAGTGTGCAG
ACCTGGGTTCTTCAAAGCCTCTCCTCACAGCCAGACCTGCAGCAAATGTCCACCTCACAGTTAC
ACCCATGAGGAAGCTTCCACCTCTTGTGTCTGTGAAAAGGATTATTTCAGGAGGGAATCTGATC
CGCCCACAATGGCATGCACAACTCCTTCTCCAGTCACCAACGTGAAGAAGGGGAAAATCGCAAA
GAACAGCATTTCTTTGTCTTGGCAAGAGCCAGATCGCCCCAATGGGATCATCCTGGAGTACGAA
ATCAAGTACTTTGAAAAGGACCAAGAGACCAGCTACACAATTATCAAGTCTAAAGAGACCACTA
TTACGGCAGAGGGCCTGAAACCTGCGTCTGTGTATGTCTTCCAAATTCGAGCACGTACAGCAGC
AGGCTACGGCGTCTTCAGTCGACGGTTTGAGTTTGAAACCACACCAGTGTTTGCAGCATCTAAT
GATCAAAGCCAGATTCCCATTATTGCGGTGTCAGTGACGGTGGGAGTCATCTTGTTGGCAGTGA
TGATCGGCTTCCTCCTCAGTGGCAGTTGCTGCGAATGTGGCTGTGGGAGGGCTTCTTCCCTGTG
CGCTGTTGCCCATCCAAGCCTAATATGGCGGTGTGGCTACAGCAAAGCAAAGCAGGATCCAGAA
GAGGAAAAGATGCACTTTCATAACGGGCACATTAAACTGCCAGGAGTAAGAACGTACATTGATC
CACACACCTACGAAGATCCCACTCAAGCCGTTCATGAATTTGCCAAGGAGATCGAGGCCTCATG
CATCACCATTGAGAGAGTTATTGGAGCAGGTGAATTTGGTGAAGTTTGTAGTGGACGTTTGAAA
CTACCCGGAAAAAGAGAATTGCCTGTGGCTATCAAAACTCTTAAAGTAGGCTACACTGAAAAGC
AGCGCAGAGATTTTCTGAGTGAAGCGAGTATCATGGGGCAGTTTGATCATCCAAACATCATCCA
TCTAGAAGGCGTTGTGACTAAAAGTAAACCTGTGATGATAGTGACAGAGTACATGGAGAATGGC
TCCTTAGACACATTTTTAAAGAAAAACGATGGCCAGTTCACTGTGATTCAGCTTGTTGGCATGC
TGAGAGGCATCGCTGCAGGAATGAAGTACCTTTCTGACATGGGCTACGTGCACAGAGACCTTGC
TGCTAGAAACATCTTAATCAACAGTAACCTTGTGTGCAAAGTGTCTGACTTTGGACTTTCCAGG
GTGCTGGAAGATGATCCTGAGGCAGCCTATACCACAAGGGGAGGCAAAATTCCAATCAGGTGGA
CTGCTCCAGAAGCAATAGCTTTTCGAAAGTTTACCTCTGCCAGTGATGTCTGGAGCTATGGAAT
CGTAATGTGGGAAGTTGTGTCCTATGGAGAGAGACCGTACTGGGAGATGACCAATCAGGATGTG
ATCAAGGCAGTGGAAGAAGGCTACCGCCTGCCAAGCCCCATGGATTGTCCTGCTGCCCTCTATC
AATTAATGCTGGATTGCTGGCAGAAAGATCGCAACAGCAGGCCCAAGTTTGATGACATAGTCAA
CATGCTGGATAAGCTGATACGAAACCCAAGTAGTTTGAAGACACTGGTGAACGCGTCAAGCAGG
GTATCTACTTTGTTGGCAGAACATGGATCTTTGGGGTCTGGGGCCTACAGATCAGTAGGTGAAT
GGCTAGAAGCAATCAAAATGGGCCGGTACACAGAGATTTTCATGGAAAATGGATACAGTTCAAT
GGACGCTGTGGCTCAGGTGACCTTGGAGTGAGTAGTTTTTCTGATAATTTTTACATAGCTGTTG
GGGCAAGAAAAGTATATTCAGACAACAGAGTGGATGCAATGAAGGGAAAACAGTTTACCTGTGT
CCATATGTGTCAGCTTCAAAGAAGCCTCATCTTTTTTTAGCCTGTGCTGTTAACAGCTGCATGG
TTCCTGCTTCTTGTGTCCAGTATCTTTGCTATTTTGTTCATCAAACAGCACTTGAGAGTTTGGA
TAATTGGATTACAACCCTTGGCAAAGTACTGGTACTTTGTGTTGTGAAAAAAAAGACATTTCCT
TGAGTTTTTATACTGGTACTTATGTTACATGAATGTAAATATAAAACAAAACAAGCTGTAAGCA
CAATTGGTGTGGTTAGTCTTGTGTAACAAAAACATAAAAAGATTAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063273652 ⟹ XP_063129722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273653 ⟹ XP_063129723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273654 ⟹ XP_063129724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273655 ⟹ XP_063129725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273656 ⟹ XP_063129726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273657 ⟹ XP_063129727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273659 ⟹ XP_063129729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,374,854 (+)	NCBI

RefSeq Acc Id:

XM_063273660 ⟹ XP_063129730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	24,007,400 - 24,363,979 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001162608	(Get FASTA)	NCBI Sequence Viewer
	NP_077343	(Get FASTA)	NCBI Sequence Viewer
	XP_063129722	(Get FASTA)	NCBI Sequence Viewer
	XP_063129723	(Get FASTA)	NCBI Sequence Viewer
	XP_063129724	(Get FASTA)	NCBI Sequence Viewer
	XP_063129725	(Get FASTA)	NCBI Sequence Viewer
	XP_063129726	(Get FASTA)	NCBI Sequence Viewer
	XP_063129727	(Get FASTA)	NCBI Sequence Viewer
	XP_063129729	(Get FASTA)	NCBI Sequence Viewer
	XP_063129730	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA55357	(Get FASTA)	NCBI Sequence Viewer
	EDL89846	(Get FASTA)	NCBI Sequence Viewer
	EDL89847	(Get FASTA)	NCBI Sequence Viewer
	EDL89848	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002793
	ENSRNOP00000043926
	ENSRNOP00000062326
	ENSRNOP00000085420
GenBank Protein	P54757	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001162608 ⟸ NM_001169137
- Peptide Label:	isoform 1 precursor
- UniProtKB:	P54757 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRGSGPRGAGRRRTQGRGGGGDTPRVPASLAGCYSAPLKGPLWTCLLLCAALRTLLASPSNEVN LLDSRTVLGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVMEQNQNNWLLTSWISNEGASRI FIELKFTLRDCNSLPGGLGTCKETFNMYYFESDDENGRNIKENQYIKIDTIAADESFTELDLGD RVMKLNTEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAVFPDTITGADSSQ LLEVSGSCVNHSVTDDPPKMHCSAEGEWLVPIGKCMCKAGYEEKNGTCQVCRPGFFKASPHSQT CSKCPPHSYTHEEASTSCVCEKDYFRRESDPPTMACTRPPSAPRNAISNVNETSVFLEWIPPAD TGGRKDVSYYIACKKCNSHAGVCEECGGHVRYLPQQIGLKNTSVMMADLLAHTNYTFEIEAVNG VSDLSPGTRQYVSVNVTTNQAAPSPVTNVKKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKD QETSYTIIKSKETTITAEGLKPASVYVFQIRARTAAGYGVFSRRFEFETTPVFAASNDQSQIPI IAVSVTVGVILLAVMIGFLLSGSCCECGCGRASSLCAVAHPSLIWRCGYSKAKQDPEEEKMHFH NGHIKLPGVRTYIDPHTYEDPTQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKREL PVAIKTLKVGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLK KNDGQFTVIQLVGMLRGIAAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPE AAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEG YRLPSPMDCPAALYQLMLDCWQKDRNSRPKFDDIVNMLDKLIRNPSSLKTLVNASSRVSTLLAE HGSLGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNS LQEMKVQLVNGMVPV hide sequence

RefSeq Acc Id:	NP_077343 ⟸ NM_024367
- Peptide Label:	isoform 2
- UniProtKB:	D3ZCV9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGSGPRGAGRRRTQGRGGGGDTPRVPASLAGCYSAPLKGPLWTCLLLCAALRTLLASPSNEVN LLDSRTVLGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVMEQNQNNWLLTSWISNEGASRI FIELKFTLRDCNSLPGGLGTCKETFNMYYFESDDENGRNIKENQYIKIDTIAADESFTELDLGD RVMKLNTEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAVFPDTITGADSSQ LLEVSGSCVNHSVTDDPPKMHCSAEGEWLVPIGKCMCKAGYEEKNGTCQVCRPGFFKASPHSQT CSKCPPHSYTHEEASTSCVCEKDYFRRESDPPTMACTTPSPVTNVKKGKIAKNSISLSWQEPDR PNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASVYVFQIRARTAAGYGVFSRRFEFE TTPVFAASNDQSQIPIIAVSVTVGVILLAVMIGFLLSGSCCECGCGRASSLCAVAHPSLIWRCG YSKAKQDPEEEKMHFHNGHIKLPGVRTYIDPHTYEDPTQAVHEFAKEIEASCITIERVIGAGEF GEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVM IVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGIAAGMKYLSDMGYVHRDLAARNILINSNLVC KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERP YWEMTNQDVIKAVEEGYRLPSPMDCPAALYQLMLDCWQKDRNSRPKFDDIVNMLDKLIRNPSSL KTLVNASSRVSTLLAEHGSLGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVTLE hide sequence

Ensembl Acc Id:

ENSRNOP00000062326 ⟸ ENSRNOT00000067439

Ensembl Acc Id:

ENSRNOP00000002793 ⟸ ENSRNOT00000002793

Ensembl Acc Id:

ENSRNOP00000043926 ⟸ ENSRNOT00000043938

Ensembl Acc Id:

ENSRNOP00000085420 ⟸ ENSRNOT00000100109

RefSeq Acc Id:	XP_063129722 ⟸ XM_063273652
- Peptide Label:	isoform X1
- UniProtKB:	P54757 (UniProtKB/Swiss-Prot), F1M7W0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129723 ⟸ XM_063273653
- Peptide Label:	isoform X2
- UniProtKB:	P54757 (UniProtKB/Swiss-Prot), A0A8I6A019 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129724 ⟸ XM_063273654
- Peptide Label:	isoform X3
- UniProtKB:	P54757 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063129725 ⟸ XM_063273655
- Peptide Label:	isoform X4
- UniProtKB:	D3ZCV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129726 ⟸ XM_063273656
- Peptide Label:	isoform X5
- UniProtKB:	D3ZCV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129727 ⟸ XM_063273657
- Peptide Label:	isoform X6
- UniProtKB:	D3ZBZ7 (UniProtKB/TrEMBL), D3ZCV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129729 ⟸ XM_063273659
- Peptide Label:	isoform X7
- UniProtKB:	D3ZCV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129730 ⟸ XM_063273660
- Peptide Label:	isoform X8
- UniProtKB:	D3ZCV9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105927 ⟸ ENSRNOT00000127030

Protein Domains

Eph LBD Fibronectin type-III Protein kinase SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P54757-F1-model_v2	AlphaFold	P54757	1-1005	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620831	AgrOrtholog
BioCyc Gene	G2FUF-16048	BioCyc
Ensembl Genes	ENSRNOG00000002024	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000002793	ENTREZGENE
	ENSRNOT00000043938	ENTREZGENE
	ENSRNOT00000067439	ENTREZGENE
	ENSRNOT00000100109	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	2.60.40.10	UniProtKB/Swiss-Prot
	ephrin a2 ectodomain	UniProtKB/Swiss-Prot
	Galactose-binding domain-like	UniProtKB/Swiss-Prot
	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
	Tumor Necrosis Factor Receptor, subunit A, domain 2	UniProtKB/Swiss-Prot
InterPro	Eph_TM	UniProtKB/Swiss-Prot
	Ephrin_rcpt_lig-bd_dom	UniProtKB/Swiss-Prot
	Ephrin_rcpt_TKs	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot
	Growth_fac_rcpt_cys_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
	Tyr-kin_ephrin_A/B_rcpt-like	UniProtKB/Swiss-Prot
	Tyr_kinase_AS	UniProtKB/Swiss-Prot
	Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
	Tyr_kinase_ephrin_rcpt	UniProtKB/Swiss-Prot
	Tyr_kinase_rcpt_V_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:79208	UniProtKB/Swiss-Prot
NCBI Gene	79208	ENTREZGENE
PANTHER	EPH RECEPTOR A5	UniProtKB/Swiss-Prot
	EPHRIN TYPE-A RECEPTOR 5	UniProtKB/Swiss-Prot
Pfam	EphA2_TM	UniProtKB/Swiss-Prot
	Ephrin_lbd	UniProtKB/Swiss-Prot
	Ephrin_rec_like	UniProtKB/Swiss-Prot
	fn3	UniProtKB/Swiss-Prot
	Pkinase_Tyr	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
PhenoGen	Epha5	PhenoGen
PIRSF	TyrPK_ephrin_receptor	UniProtKB/Swiss-Prot
PRINTS	FNTYPEIII	UniProtKB/Swiss-Prot
	TYRKINASE	UniProtKB/Swiss-Prot
PROSITE	EGF_2	UniProtKB/Swiss-Prot
	EPH_LBD	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_TYR	UniProtKB/Swiss-Prot
	RECEPTOR_TYR_KIN_V_1	UniProtKB/Swiss-Prot
	RECEPTOR_TYR_KIN_V_2	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002024	RatGTEx
SMART	EPH_lbd	UniProtKB/Swiss-Prot
	Ephrin_rec_like	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
	TyrKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
	SSF49785	UniProtKB/Swiss-Prot
	SSF56112	UniProtKB/Swiss-Prot
	SSF57184	UniProtKB/Swiss-Prot
UniProt	A0A8I6A019	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LLV7_RAT	UniProtKB/TrEMBL
	A6JCS4_RAT	UniProtKB/TrEMBL
	A6JCS5_RAT	UniProtKB/TrEMBL
	A6JCS6_RAT	UniProtKB/TrEMBL
	D3ZBZ7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZCV9	ENTREZGENE, UniProtKB/TrEMBL
	EPHA5_RAT	UniProtKB/Swiss-Prot
	F1M7W0	ENTREZGENE, UniProtKB/TrEMBL
	P54757	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-16	Epha5	EPH receptor A5	Epha5	EphA5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Epha5	EphA5	Els1	eck-like sequence 1	Symbol and Name updated	1299863	APPROVED
2002-08-07	Els1	eck-like sequence 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	early in development expression is prominent in the periventricular germinal layers of the brain	632543

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)