Advanced Search (OLGA)

Gene: Ptpro (protein tyrosine phosphatase, receptor type, O) Rattus norvegicus

Analyze

Symbol:

Ptpro

Name:

protein tyrosine phosphatase, receptor type, O

RGD ID:

62068

Description:

Enables protein tyrosine phosphatase activity. Involved in negative regulation of glomerular filtration. Predicted to be located in apical plasma membrane; dendritic spine; and lateral plasma membrane. Predicted to be active in GABA-ergic synapse; glutamatergic synapse; and postsynaptic density membrane. Human ortholog(s) of this gene implicated in nephrotic syndrome type 6. Orthologous to human PTPRO (protein tyrosine phosphatase receptor type O); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GLEPP1; Glomerular epithelial protein 1; receptor-type protein tyrosine phosphatase D30; receptor-type tyrosine-protein phosphatase O; RPTP-BK

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Candidate Gene For:

Kidm48

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,895,104 - 172,105,911 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	171,895,232 - 172,105,903 (+)	Ensembl				GRCr8
mRatBN7.2	4	170,164,071 - 170,374,790 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	170,164,431 - 170,374,771 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	176,455,604 - 176,666,205 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	172,240,800 - 172,451,487 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,861,264 - 171,071,868 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	171,250,766 - 171,461,571 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	171,250,818 - 171,461,677 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	235,507,823 - 235,718,691 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	174,376,396 - 174,586,694 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	158,744,680 - 158,954,298 (+)	NCBI		Celera
RGSC_v3.1	4	174,621,519 - 174,831,818 (+)	NCBI
Cytogenetic Map	4	q43-q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

focal segmental glomerulosclerosis (ISO)

Liver Neoplasms (ISO)

melanoma (ISO)

nephrotic syndrome type 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-bromohexadecanoic acid (ISO)

3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine (EXP)

4,4'-diaminodiphenylmethane (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

amitrole (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

camptothecin (ISO)

carbon nanotube (ISO)

chloroprene (EXP,ISO)

choline (ISO)

chromium(6+) (ISO)

clothianidin (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

curcumin (ISO)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (EXP)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

entinostat (ISO)

ethanol (EXP)

flavonoids (EXP)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

gamma-tocopherol (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

panobinostat (ISO)

paracetamol (ISO)

paraquat (ISO)

parathion (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

progesterone (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

tamoxifen (ISO)

terbufos (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

tocopherol (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

zinc protoporphyrin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA,ISO)

cell morphogenesis (IEA,ISO)

glomerulus development (IEA,ISO)

lamellipodium assembly (IEA,ISO)

monocyte chemotaxis (IEA,ISO)

negative regulation of canonical Wnt signaling pathway (IEA,ISO)

nervous system development (NAS)

podocyte differentiation (IEA,ISO)

regulation of glomerular filtration (IEA,ISO)

regulation of synapse organization (IEA,ISO)

slit diaphragm assembly (IEA,ISO)

Cellular Component

apical plasma membrane (IEA,ISO)

dendritic spine (IEA,ISO)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IEA,ISO)

lateral plasma membrane (IEA,ISO)

membrane (IEA)

plasma membrane (IEA,ISO)

postsynaptic density membrane (IEA,ISO)

Molecular Function

cadherin binding (IEA,ISO)

hydrolase activity (IEA)

identical protein binding (IEA,ISO)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

protein tyrosine phosphatase activity (IDA,IEA,ISO)

Wnt-protein binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Antibodies to protein tyrosine phosphatase receptor type O (PTPro) increase glomerular albumin permeability (P(alb)).	Charba DS, etal., Am J Physiol Renal Physiol. 2009 Jul;297(1):F138-44. doi: 10.1152/ajprenal.00122.2008. Epub 2009 Apr 29.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	GLEPP1 receptor tyrosine phosphatase (Ptpro) in rat PAN nephrosis. A marker of acute podocyte injury.	Kim YH, etal., Nephron 2002 Apr;90(4):471-6.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Identification of a receptor-type protein tyrosine phosphatase expressed in postmitotic maturing neurons: its structure and expression in the central nervous system.	Tagawa M, etal., Biochem J 1997 Feb 1;321 ( Pt 3)(30):865-71.
12.	Identification of a rat protein tyrosine phosphatase gene preferentially expressed in the embryonal brain.	Tagawa M, etal., Cell Mol Biol Res 1994;40(7-8):627-31.
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:11086029	PMID:15673668	PMID:15978577	PMID:17457373	PMID:19056867	PMID:19167335	PMID:19233845	PMID:19573017	PMID:19800005	PMID:19924828	PMID:20398064	PMID:20633639
PMID:20804755	PMID:21722858	PMID:23376485	PMID:26063811	PMID:28871037	PMID:28926625	PMID:35906634	PMID:38565385

Genomics

Comparative Map Data

Ptpro
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,895,104 - 172,105,911 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	171,895,232 - 172,105,903 (+)	Ensembl				GRCr8
mRatBN7.2	4	170,164,071 - 170,374,790 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	170,164,431 - 170,374,771 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	176,455,604 - 176,666,205 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	172,240,800 - 172,451,487 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,861,264 - 171,071,868 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	171,250,766 - 171,461,571 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	171,250,818 - 171,461,677 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	235,507,823 - 235,718,691 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	174,376,396 - 174,586,694 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	158,744,680 - 158,954,298 (+)	NCBI		Celera
RGSC_v3.1	4	174,621,519 - 174,831,818 (+)	NCBI
Cytogenetic Map	4	q43-q44	NCBI

PTPRO
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	15,322,508 - 15,598,331 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	15,322,257 - 15,602,175 (+)	Ensembl			hg38	GRCh38
GRCh37	12	15,475,442 - 15,751,265 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	15,366,754 - 15,641,602 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	15,590,552 - 15,641,602	NCBI
Celera	12	20,620,432 - 20,895,225 (+)	NCBI		Celera
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	15,244,485 - 15,520,600 (+)	NCBI		HuRef
CHM1_1	12	15,441,256 - 15,717,221 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	15,199,775 - 15,475,561 (+)	NCBI		T2T-CHM13v2.0

Ptpro
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	137,229,189 - 137,440,251 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	137,229,317 - 137,440,231 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	137,252,299 - 137,464,634 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	137,252,319 - 137,463,233 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	137,200,820 - 137,413,155 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	137,216,661 - 137,427,429 (+)	NCBI		MGSCv36	mm8
Celera	6	140,313,708 - 140,529,181 (+)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.75	NCBI

Ptpro
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	12,018,888 - 12,248,807 (+)	Ensembl
ChiLan1.0	NW_004955413	12,019,026 - 12,248,026 (+)	NCBI	ChiLan1.0	ChiLan1.0

PTPRO
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	20,775,178 - 21,040,639 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	20,771,989 - 21,037,405 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	15,329,314 - 15,594,787 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	15,725,447 - 15,990,532 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	15,725,917 - 15,990,532 (+)	Ensembl			panPan2	panpan1.1

PTPRO
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	31,082,334 - 31,322,024 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	31,084,544 - 31,322,022 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	15,127,226 - 15,366,211 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	31,403,012 - 31,640,473 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	31,403,562 - 31,640,210 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	31,291,842 - 31,530,890 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	31,247,444 - 31,488,513 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,846,836 - 15,088,282 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ptpro
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	92,239,451 - 92,460,970 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	1,964,665 - 2,188,672 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	1,967,079 - 2,188,651 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTPRO
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	57,019,745 - 57,263,346 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	57,021,819 - 57,263,395 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	60,237,424 - 60,286,938 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PTPRO
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	15,225,375 - 15,494,559 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	15,392,926 - 15,495,807 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	19,805,301 - 20,076,839 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptpro
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	22,445,311 - 22,700,904 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624752	22,446,203 - 22,700,925 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptpro
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	11,973,388 - 12,179,315 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ptpro
1231 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	714
Count of miRNA genes:	301
Interacting mature miRNAs:	389
Transcripts:	ENSRNOT00000040576
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	160623982	184426481	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat

Markers in Region

RH127867

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	170,283,489 - 170,283,689 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	171,370,284 - 171,370,483	NCBI	Rnor6.0
Rnor_5.0	4	235,627,170 - 235,627,369	UniSTS	Rnor5.0
RGSC_v3.4	4	174,495,293 - 174,495,492	UniSTS	RGSC3.4
Celera	4	158,863,125 - 158,863,324	UniSTS
RH 3.4 Map	4	1024.4	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH141958

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	170,374,393 - 170,374,612 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	171,461,173 - 171,461,391	NCBI	Rnor6.0
Rnor_5.0	4	235,718,295 - 235,718,513	UniSTS	Rnor5.0
Celera	4	158,953,921 - 158,954,139	UniSTS
RH 3.4 Map	4	1024.8	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
18	12	67	176	91	90	59	92	59	6	367	192	11	155	90	93	31	24	24

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D30749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D45412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U28938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040576 ⟹ ENSRNOP00000044055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	171,895,232 - 172,105,903 (+)	Ensembl
mRatBN7.2 Ensembl	4	170,276,715 - 170,374,771 (+)	Ensembl
Rnor_6.0 Ensembl	4	171,250,818 - 171,461,677 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095117 ⟹ ENSRNOP00000095771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	170,164,431 - 170,374,771 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097203 ⟹ ENSRNOP00000077071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	171,895,444 - 172,105,903 (+)	Ensembl
mRatBN7.2 Ensembl	4	170,164,431 - 170,374,771 (+)	Ensembl

RefSeq Acc Id:

NM_017336 ⟹ NP_059032

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,895,511 - 172,105,911 (+)	NCBI
mRatBN7.2	4	170,164,373 - 170,374,790 (+)	NCBI
Rnor_6.0	4	171,251,243 - 171,461,550 (+)	NCBI
Rnor_5.0	4	235,507,823 - 235,718,691 (+)	NCBI
RGSC_v3.4	4	174,376,396 - 174,586,694 (+)	RGD
Celera	4	158,744,680 - 158,954,298 (+)	RGD

Sequence:

show sequence

TTTTAAGCGCCACGGGGACCCGCTGGCGCTGCCATCCCTCCCGGGTTCCTGGTCGCGCCACGAT
GGGGCACCTGCCTAGGGAAAGGCGCGGGGGCCGCCGCCTGCTACCTCTGCTCGGGCTCTTTGTG
CTGCTCAAGATTGTTTCAACGTTCCACGTGACTGTCCGAGACGACAACAACATCGTTGTGTCTT
TAGAAGCTTCTGATGTAGTCAGCCCAACCTCCGTGTATGTTGTGAGGGTAGCTGGCGAATCCAA
AAACTATTTCTTCGAATTTGAGGAATCCAATGGCACACTGCCTCCTCCTGTGGTCTTTAAGGCC
ACGTATCATGGTCTTTATTACATCATCAGTCTGGTGGTAGTCAGTGGGAATGTGGTCACCAAAC
CATCCCGATCAATCACCGTGCTGACAAAACCCTTGCCCGTAACCAGTGTGTCTATATATGACTA
TAAGCCTTCTCCTGAGACAGGAGTACTGTTTGAAATTCACTATCCGGAAAAATACAACGTGTTC
AGCAGAGTGAACATCAGCTACTGGGAGGGGAAGGATTTCAGGACGATGCTGTACAAAGACTTCC
TGAAGGGGAAAACCGTGTTTAATCACTGGCTCCCGGGGATCTGCTACAGTAACATCACTTTCCA
GCTGGTTTCTGAGGCGACCTTTAACAAAAGCACCCTGGTGGAGTGCAGTGGTGTGAGTCACGAA
CCCAAACAACACAGAACAGCGCCGTATCCCCCTCGAAACATCTCTGTTCGCTTTGTCAACTTGA
ACAAGAACAACTGGGAAGAACCAAGCGGGAGCTTCCCCGAGGACTCGTTCATCAAACCGCAAGA
CGCGATAGGAAGAGACAGACCCTTCCATTTCCCCGAGGAAACCCCTGAGACGCCCGCCAGCAAT
GCGTCTTCCGGCTGGCCTGACCCGAACGGCACTGAGTATGAGAGCACATCTCAGCCCTACTGGT
GGGACAGTGCATCCGCGGCCCCTGAAAACGAGGAGGACTTCGTCAGCGTGCTGCCAGCGGACTA
TGACACTGAGGCCACGCTCGGCAGGACAGAGAAACCCACAGCTGACCCTTTCTCTGCCTTCCCC
GTGCAGATGACTCTGAGCTGGTTACCACCAAAACCGCCTACAGCCTTCGATGGCTTCAATATCC
TCATAGAGAGGGAAGGGAACTTTACCGACTATTTGACAGTGGATGAAGAAGCCCACGAGTTTGT
TGCCGAACTGAAGGAGCCTGGAAAGTACAGACTCTCAGTGACAACCTTCAGCTCCTCGGGAGCC
TGTGAGACTCGGAAAAGCCAGTCAGCAAAATCGCTCAGCTTCTACATCAGCCCCACAGGAGAGT
GGATTGAAGAACTGACTGAGAAACCGCAGCACGTGAGTGTCCACGTCTTAAGCTCAACCACTGC
CTTGTTGTCGTGGACATCTTCCCAGGAGAACTACAACAGCACCATTGTGTCTGTGGTGTCCCTG
ACATGCCAGAAACAGAAAGAGAGCCAGCGGCTGGAGAAGCAGTATTGTACCCAGGTGAACTCAA
GCAAACCTGTAATTGAGAACCTGGTTCCCGGTGCCCAGTACCAGGTTGTGATGTACCTAAGAAA
AGGCCCTTTGATTGGGCCACCTTCTGATCCTGTGACATTTGCCATTGTTCCCACGGGGATAAAG
GATTTAATGCTCTATCCATTGGGTCCCACGGCAGTAGTGCTGAGCTGGACCCGACCTTACTTGG
GAGTGTTCAGAAAATACGTGGTTGAAATGTTTTATTTCAACCCCACCACCATGACCTCCGAGTG
GACGACCTACTACGAAATAGCAGCGACCGTCTCCTTAACATCGTCCGTGAGAATAGCAAATCTA
TTGCCGGCGTGGTACTACAACTTTCGCGTAACCATGGTGACGTGGGGAGATCCAGAACTGAGCT
GCTGTGACAGTTCCACCATCAGCTTCATAACGGCCCCCGTCGCTCCAGAAATCACGTCTGTGGA
GTACTTCAACAGCCTGCTGTACATCAGCTGGACCTACGGGGACGCCACCACTGACCTGTCCCAT
TCGAGAATGCTACACTGGATGGTCGTGGCAGAAGGGAGGAGGAAAATTAAAAAGAGTGTGACAC
GCAATGTCATGACGGCCATCCTTAGCCTGCCTCCAGGAGATATCTACAACCTGTCTGTCACAGC
CTGCACTGAGAGGGGGAGTAACACCTCCATGCTCCGCCTTGTCAAGCTAGAACCAGCTCCTCCA
AAATCACTCTTCGCAGTGAACAAAACGCAGACATCGGTCACCCTGCTTTGGGTTGAGGAGGGCG
TAGCTGATTTCTTTGAAGTCCTCTGTCAGAAGCTCGGGTCTGGCCACGATGGCAAACTCCAGGA
ACCGGTAGCTGTTTCCTCCCACGTGGTGACCATCTCCAGCCTCCTCCCAGCCACTGCCTACAAC
TGCAGTGTCACCAGCTTCAGCCACGACAGTCCCAGTGTCCCTACGTTCATAGCTGTCTCCACAA
TGGTTACAGAGGTGAACCCTAATGTGGTGGTGATCTCGGTGCTGGCCATCCTCAGCATACTTTT
AATTGGACTGCTGTTAGTGACCCTTGTCATTCTGAGAAAGAAGCACCTGCAGATGGCCAGGGAG
TGTGGGGCTGGCACGTTTGTCAATTTTGCATCCTTGGAGAGGGAAGGGAAACTCCCCTACAGTT
GGCGTAGGAGTGTCTTTACTTTCTTAACCCTGCTGCCCTCATGTCTGTGGACTGACTATCTGTT
GGCATTTTATATTAACCCTTGGAGTAAAAATGGCTTAAAGAAGAGGAAACTGACGAACCCTGTT
CAGCTGGACGATTTTGATTCTTACATCAAGGACATGGCCAAGGACTCTGACTATAAATTCTCTC
TTCAGTTTGAGGAGTTGAAGTTGATTGGACTGGATATTCCACACTTTGCTGCAGATCTTCCGCT
GAACCGATGTAAAAACCGCTATACAAACATCCTGCCGTACGACTTCAGCAGAGTGAGGCTGGTC
TCCATGAATGAAGAAGAAGGAGCAGACTACATTAATGCCAATTATATTCCTGGCTACAACTCAC
CTCAGGAGTACATTGCCACCCAGGGACCACTGCCGGAAACCAGAAATGATTTCTGGAAGATGGT
CCTGCAGCAGAAGTCTCGCATCATTGTCATGCTCACTCAGTGCAATGAGAAAAGAAGGGTAAAA
TGCGACCACTACTGGCCATTCACGGAAGAACCCATTGCTTATGGAGACATCACCGTGGAGATGG
TCTCTGAGGAAGAACAGGAGGACTGGGCCAGCAGACACTTCCGGATCAATTATGCTGACGAGGC
CCAGGATGTGATGCACTTTAACTACACGGCCTGGCCAGACCATGGCGTGCCTCCAGCAAATGCT
GCCGAGAGCATCCTGCAGTTCGTGTACACTGTCCGGCAGCAAGCCACCAAGAGCAAAGGACCCA
TGATCATCCACTGCAGCGCGGGCGTGGGACGGACAGGCACCTTCATAGCCCTTGACAGGCTCTT
GCAACACATCCGAGATCACGAATTTGTGGACATCTTGGGGCTGGTGTCAGAAATGCGCTCATAC
CGAATGTCGATGGTACAGACAGAGGAGCAGTACATCTTCATCCATCAGTGCGTGCAGCTGATGT
GGCTGAAGAAGAAGCAACAGTTCTGCATCAGTGACGTCATCTACGAGAACGTCAGCAAGTCCTA
GTTCAGACTCGGGAGCGGTGAGGCCATGATGTCTACCCATCCTCCCTTGCTTCCAGAGGTTTTA
TAGGGGCCTTTAGTCACTTTGTCAAATCGCGTCCCCGCTGCGCAGTTTGTGGACAAGGAGGTGA
TTTAACCTCCTAGAACCGAGAAGACTTAGCCTTAAGGAGCCTACAATACCGTTTGGAGTCTTTT
CACTTCTAGACGTTTGATGGTCCAAATTCACTAGGATTTCCAGAAATGCTCCTCCTCGAAGGGC
GGGAAGTGCCCTTCCTGATGGTTCAGTCGGCTCTTTGCTGCTTGGGCTGGGTTTGGTTTTTTCT
TTTTTTTAAGTGCAATAATTTCTGTATAATCGTGATTTTTTTTTTACATTCGCAATTCAGAATG
TTGAATTGTTATCCGCCCACATCACTGATCAGTGCCACAGCCTTGGGAAGGCCTTATCGCAGAG
TTTTATCTCACCACTGAAGAGGCATGGCTACACACAGGAAGACTCGGTGACAAATCCTCAAAGG
AAATGAGCGCGTGTGTCCCTCCCTCCAACCTCTCGAAGCTATGGGTCAGGAGTAGGTGGGCAGA
GAGAGAAGAGAGGGGTTCTACTCACACGTCAGCCGGTTTATCTCTTCCTATTTCGAATATGAGA
ACCTGTGTTTCGAAGTAGAGTAGGAAAAACATTACTTGTCTGACTTGTCGTAGTGGGTTTCTTC
CTTGTTGACAGTTGGGAGTTTCTTCCGTGGCTCTTTTGAACTAGTGTCACTGTCATGGTCCTTT
TCAAACAGCCAGAGCTGACTCAACAGTTTTGAGTCTGACTCTGAACTCTGAGAAATCTTGGTGC
CTAGCCTTCTTTATTTTTCTGTCCACCCGTGTACACAAGAACAGTTTCTCCAAGAGCTATAGGC
TGTAAAAATGCACTTTCTTTCCCCACCCAGAGGAGCTGGGAATTCAGAAGTCAGGACAACGAAC
TCAGCATGCTAGGACAGTCACTGGACACCGTCCCTTAAGAATACCGTTGAGCGTCTCCGTGGAT
TCCGACAGGATATTCTCTGGGTTCTTTGCATTTCTGTTGTCAGACTCATTTTAACCCGTGTAGC
TAGTGGCATTTTATTCTTTGGATTTTGTATGATTAAAGTACATGATTATGTGTTGTGACCAGCG
CCGCGAA

hide sequence

RefSeq Acc Id:

XM_006237571 ⟹ XP_006237633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	172,053,885 - 172,105,910 (+)	NCBI
mRatBN7.2	4	170,322,746 - 170,374,790 (+)	NCBI
Rnor_6.0	4	171,409,565 - 171,461,571 (+)	NCBI
Rnor_5.0	4	235,507,823 - 235,718,691 (+)	NCBI

Sequence:

show sequence

AAAGGAGAAGTTGAAAACACAAGCAGGGAAGGACACAAACCACTCTGCCTTCGGATGTGGATGA
CAGGCTTTGTGTGTGGGCATATTCGAAAGCTGAGTGAAAGCTCAGGCTCTTATCTACCTGCCTA
ACCAGCTCCTCCAAAATCACTCTTCGCAGTGAACAAAACGCAGACATCGGTCACCCTGCTTTGG
GTTGAGGAGGGCGTAGCTGATTTCTTTGAAGTCCTCTGTCAGAAGCTCGGGTCTGGCCACGATG
GCAAACTCCAGGAACCGGTAGCTGTTTCCTCCCACGTGGTGACCATCTCCAGCCTCCTCCCAGC
CACTGCCTACAACTGCAGTGTCACCAGCTTCAGCCACGACAGTCCCAGTGTCCCTACGTTCATA
GCTGTCTCCACAATGGTTACAGAGGTGAACCCTAATGTGGTGGTGATCTCGGTGCTGGCCATCC
TCAGCATACTTTTAATTGGACTGCTGTTAGTGACCCTTGTCATTCTGAGAAAGAAGCACCTGCA
GATGGCCAGGGAGTGTGGGGCTGGCACGTTTGTCAATTTTGCATCCTTGGAGAGGGAAGGGAAA
CTCCCCTACAGTTGGCGTAGGAGTGTCTTTACTTTCTTAACCCTGCTGCCCTCATGTCTGTGGA
CTGACTATCTGTTGGCATTTTATATTAACCCTTGGAGTAAAAATGGCTTAAAGAAGAGGAAACT
GACGAACCCTGTTCAGCTGGACGATTTTGATTCTTACATCAAGGACATGGCCAAGGACTCTGAC
TATAAATTCTCTCTTCAGTTTGAGGAGTTGAAGTTGATTGGACTGGATATTCCACACTTTGCTG
CAGATCTTCCGCTGAACCGATGTAAAAACCGCTATACAAACATCCTGCCGTACGACTTCAGCAG
AGTGAGGCTGGTCTCCATGAATGAAGAAGAAGGAGCAGACTACATTAATGCCAATTATATTCCT
GGCTACAACTCACCTCAGGAGTACATTGCCACCCAGGGACCACTGCCGGAAACCAGAAATGATT
TCTGGAAGATGGTCCTGCAGCAGAAGTCTCGCATCATTGTCATGCTCACTCAGTGCAATGAGAA
AAGAAGGGTAAAATGCGACCACTACTGGCCATTCACGGAAGAACCCATTGCTTATGGAGACATC
ACCGTGGAGATGGTCTCTGAGGAAGAACAGGAGGACTGGGCCAGCAGACACTTCCGGATCAATT
ATGCTGACGAGGCCCAGGATGTGATGCACTTTAACTACACGGCCTGGCCAGACCATGGCGTGCC
TCCAGCAAATGCTGCCGAGAGCATCCTGCAGTTCGTGTACACTGTCCGGCAGCAAGCCACCAAG
AGCAAAGGACCCATGATCATCCACTGCAGCGCGGGCGTGGGACGGACAGGCACCTTCATAGCCC
TTGACAGGCTCTTGCAACACATCCGAGATCACGAATTTGTGGACATCTTGGGGCTGGTGTCAGA
AATGCGCTCATACCGAATGTCGATGGTACAGACAGAGGAGCAGTACATCTTCATCCATCAGTGC
GTGCAGCTGATGTGGCTGAAGAAGAAGCAACAGTTCTGCATCAGTGACGTCATCTACGAGAACG
TCAGCAAGTCCTAGTTCAGACTCGGGAGCGGTGAGGCCATGATGTCTACCCATCCTCCCTTGCT
TCCAGAGGTTTTATAGGGGCCTTTAGTCACTTTGTCAAATCGCGTCCCCGCTGCGCAGTTTGTG
GACAAGGAGGTGATTTAACCTCCTAGAACCGAGAAGACTTAGCCTTAAGGAGCCTACAATACCG
TTTGGAGTCTTTTCACTTCTAGACGTTTGATGGACCAAATTCACTAGGATTTCCAGAAATGCTC
CTCCTCGAAGGGCGGGAAGTGCCCTTCCTGATGGTTCAGTCGGCTCTTTGCTGCTTGGGCTGGG
TTTGGTTTTTTCTTTTTTTTAAGTGCAATAATTTCTGTATAATCGTGATTTTTTTTTTTACATT
CGCAATTCAGAATGTTGAATTGTTATCCGCCCACATCACTGATCAGTGCCACAGCCTTGGGAAG
GACCTTATCGCAGAGTTTTATCTCACCACTGAAGAGGCATGGCTACACACAGGAAGACTCGGTG
ACAAATCCTCAAAGGAAATGAGCGCGTGTGTCCCTCCCTCCAACCTCTCGAAGCTATGGGTCAG
GAGTAGGTGGGCAGAGAGAGAAGAGAGGGGTTCTACTCACACGTCAGCCGGTTTATCTCTTCCT
ATTTCGAATATGAGAACCTGTGTTTCGAAGTAGAGTAGGAAAAACATTACTTGTCTGACTTGTC
GTAGTGGGTTTCTTCCTTGTTGACAGTTGGGAGTTTCTTCCGTGGCTCTTTTGAACTAGTGTCA
CTGTCATGGTCCTTTTCAAACAGCCAGAGCTGACTCAACAGTTTTGAGTCTGACTCTGAACTCT
GAGAAATCTTGGTGCCTAGCCTTCTTTATTTTTCTGTCCACCCGTGTACACAAGAACAGTTTCT
CCAAGAGCTATAGGCTGTAAAAATGCACTTTCTTTCCCCACCCAGAGGAGCTGGGAATTCAGAA
GTCAGGACAACGAACTCAGCATGCTAGGACAGTCACTGGACACCGTCCCTTAAGAATACCGTTG
AGCGTCTCCGTGGATTCCGACAGGATATTCTCTGGGTTTCTTTGCATTTCTGTTGTCAGACTCA
TTTTAACCCGTGTAGCTAGTGGCATTTTATTCTTTGGATTTTGTATGATTAAAGTACATGATTA
TGTGTTGTGACCATAAAAGTTGTCAAAATGAGCA

hide sequence

RefSeq Acc Id:

XM_017592851 ⟹ XP_017448340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,895,104 - 172,105,910 (+)	NCBI
mRatBN7.2	4	170,164,098 - 170,374,790 (+)	NCBI
Rnor_6.0	4	171,250,766 - 171,461,571 (+)	NCBI

Sequence:

show sequence

TGAGAAGGACCTGGGATAAGAGGCAGAGGGGAAATCCCCGCAAACACATCCTCCTAGGAGACTC
TGGAGGGGCTGAGGCGGAGCGTGGTCTGGGGGCTGCCTAGCAATGGGAAGCGAGCAGGCCCTGG
TGGGAGGACCTGAGATCTGCACTTGAGGAGTTCCTTGCTCTGAGACAGAACATCCCTGTTGCTA
GGGGCCGCTGAGGGCTGCGGAGCCCGGGCAGCTCCCTCTGCACGCCGACCCCTGCCTCCCGTGG
CAACCGCTGTAGCTGTGGCGCAGAGCCTCGCCCACTGCCATCCCCACCCTCTCCATCCTTAGCC
ATTAAGCGACGCCGGCTCCTGGAACGTTCTAGCAGGAGTCAGGCACAGAAGAGGAGAGCGATCC
ATCCGGAGGCGCAGGAGGACCTGCCAGGCGACATGCGGCCGCCTGGAGCCGCCCGGGCGCCCGA
GGTCTAAGGCTGCCAGCCGGGACTGGTCATTTTAAGCGCCACGGGGACCCGCTGGCGCTGCCAT
CCCTCCCGGGTTCCTGGTCGCGCCACGATGGGGCACCTGCCTAGGGAAAGGCGCGGGGGCCGCC
GCCTGCTACCTCTGCTCGGGCTCTTTGTGCTGCTCAAGATTGTTTCAACGTTCCACGTGACTGT
CCGAGACGACAACAACATCGTTGTGTCTTTAGAAGCTTCTGATGTAGTCAGCCCAACCTCCGTG
TATGTTGTGAGGGTAGCTGGCGAATCCAAAAACTATTTCTTCGAATTTGAGGAATCCAATGGCA
CACTGCCTCCTCCTGTGGTCTTTAAGGCCACGTATCATGGTCTTTATTACATCATCAGTCTGGT
GGTAGTCAGTGGGAATGTGGTCACCAAACCATCCCGATCAATCACCGTGCTGACAAAACCCTTG
CCCGTAACCAGTGTGTCTATATATGACTATAAGCCTTCTCCTGAGACAGGAGTACTGTTTGAAA
TTCACTATCCGGAAAAATACAACGTGTTCAGCAGAGTGAACATCAGCTACTGGGAGGGGAAGGA
TTTCAGGACGATGCTGTACAAAGACTTCCTGAAGGGGAAAACCGTGTTTAATCACTGGCTCCCG
GGGATCTGCTACAGTAACATCACTTTCCAGCTGGTTTCTGAGGCGACCTTTAACAAAAGCACCC
TGGTGGAGTGCAGTGGTGTGAGTCACGAACCCAAACAACACAGAACAGCGCCGTATCCCCCTCG
AAACATCTCTGTTCGCTTTGTCAACTTGAACAAGAACAACTGGGAAGAACCAAGCGGGAGCTTC
CCCGAGGACTCGTTCATCAAACCGCAAGACGCGATAGGAAGAGACAGACCCTTCCATTTCCCCG
AGGAAACCCCTGAGACGCCCGCCAGCAATGCGTCTTCCGGCTGGCCTGACCCGAACGGCACTGA
GTATGAGAGCACATCTCAGCCCTACTGGTGGGACAGTGCATCCGCGGCCCCTGAAAACGAGGAG
GACTTCGTCAGCGTGCTGCCAGCGGACTATGACACTGAGGCCACGCTCGGCAGGACAGAGAAAC
CCACAGCTGACCCTTTCTCTGCCTTCCCCGTGCAGATGACTCTGAGCTGGTTACCACCAAAACC
GCCTACAGCCTTCGATGGCTTCAATATCCTCATAGAGAGGGAAGGGAACTTTACCGACTATTTG
ACAGTGGATGAAGAAGCCCACGAGTTTGTTGCCGAACTGAAGGAGCCTGGAAAGTACAGACTCT
CAGTGACAACCTTCAGCTCCTCGGGAGCCTGTGAGACTCGGAAAAGCCAGTCAGCAAAATCGCT
CAGCTTCTACATCAGCCCCACAGGAGAGTGGATTGAAGAACTGACTGAGAAACCGCAGCACGTG
AGTGTCCACGTCTTAAGCTCAACCACTGCCTTGTTGTCGTGGACATCTTCCCAGGAGAACTACA
ACAGCACCATTGTGTCTGTGGTGTCCCTGACATGCCAGAAACAGAAAGAGAGCCAGCGGCTGGA
GAAGCAGTATTGTACCCAGGTGAACTCAAGCAAACCTGTAATTGAGAACCTGGTTCCCGGTGCC
CAGTACCAGGTTGTGATGTACCTAAGAAAAGGCCCTTTGATTGGGCCACCTTCTGATCCTGTGA
CATTTGCCATTGTTCCCACGGGGATAAAGGATTTAATGCTCTATCCATTGGGTCCCACGGCAGT
AGTGCTGAGCTGGACCCGACCTTACTTGGGAGTGTTCAGAAAATACGTGGTTGAAATGTTTTAT
TTCAACCCCACCACCATGACCTCCGAGTGGACGACCTACTACGAAATAGCAGCGACCGTCTCCT
TAACATCGTCCGTGAGAATAGCAAATCTATTGCCGGCGTGGTACTACAACTTTCGCGTAACCAT
GGTGACGTGGGGAGATCCAGAACTGAGCTGCTGTGACAGTTCCACCATCAGCTTCATAACGGCC
CCCGTCGCTCCAGAAATCACGTCTGTGGAGTACTTCAACAGCCTGCTGTACATCAGCTGGACCT
ACGGGGACGCCACCACTGACCTGTCCCATTCGAGAATGCTACACTGGATGGTCGTGGCAGAAGG
GAGGAGGAAAATTAAAAAGAGTGTGACACGCAATGTCATGACGGCCATCCTTAGCCTGCCTCCA
GGAGATATCTACAACCTGTCTGTCACAGCCTGCACTGAGAGGGGGAGTAACACCTCCATGCTCC
GCCTTGTCAAGCTAGAACCAGCTCCTCCAAAATCACTCTTCGCAGTGAACAAAACGCAGACATC
GGTCACCCTGCTTTGGGTTGAGGAGGGCGTAGCTGATTTCTTTGAAGTCCTCTGTCAGAAGCTC
GGGTCTGGCCACGATGGCAAACTCCAGGAACCGGTAGCTGTTTCCTCCCACGTGGTGACCATCT
CCAGCCTCCTCCCAGCCACTGCCTACAACTGCAGTGTCACCAGCTTCAGCCACGACAGTCCCAG
TGTCCCTACGTTCATAGCTGTCTCCACAATGGTTACAGAGGTGAACCCTAATGTGGTGGTGATC
TCGGTGCTGGCCATCCTCAGCATACTTTTAATTGGACTGCTGTTAGTGACCCTTGTCATTCTGA
GAAAGAAGCACCTGCAGATGGCCAGGGAGTGTGGGGCTGGCACGTTTGTCAATTTTGCATCCTT
GGAGAGGGAAGGGAAACTCCCCTACAGTTGGAGTAAAAATGGCTTAAAGAAGAGGAAACTGACG
AACCCTGTTCAGCTGGACGATTTTGATTCTTACATCAAGGACATGGCCAAGGACTCTGACTATA
AATTCTCTCTTCAGTTTGAGGAGTTGAAGTTGATTGGACTGGATATTCCACACTTTGCTGCAGA
TCTTCCGCTGAACCGATGTAAAAACCGCTATACAAACATCCTGCCGTACGACTTCAGCAGAGTG
AGGCTGGTCTCCATGAATGAAGAAGAAGGAGCAGACTACATTAATGCCAATTATATTCCTGGCT
ACAACTCACCTCAGGAGTACATTGCCACCCAGGGACCACTGCCGGAAACCAGAAATGATTTCTG
GAAGATGGTCCTGCAGCAGAAGTCTCGCATCATTGTCATGCTCACTCAGTGCAATGAGAAAAGA
AGGGTAAAATGCGACCACTACTGGCCATTCACGGAAGAACCCATTGCTTATGGAGACATCACCG
TGGAGATGGTCTCTGAGGAAGAACAGGAGGACTGGGCCAGCAGACACTTCCGGATCAATTATGC
TGACGAGGCCCAGGATGTGATGCACTTTAACTACACGGCCTGGCCAGACCATGGCGTGCCTCCA
GCAAATGCTGCCGAGAGCATCCTGCAGTTCGTGTACACTGTCCGGCAGCAAGCCACCAAGAGCA
AAGGACCCATGATCATCCACTGCAGCGCGGGCGTGGGACGGACAGGCACCTTCATAGCCCTTGA
CAGGCTCTTGCAACACATCCGAGATCACGAATTTGTGGACATCTTGGGGCTGGTGTCAGAAATG
CGCTCATACCGAATGTCGATGGTACAGACAGAGGAGCAGTACATCTTCATCCATCAGTGCGTGC
AGCTGATGTGGCTGAAGAAGAAGCAACAGTTCTGCATCAGTGACGTCATCTACGAGAACGTCAG
CAAGTCCTAGTTCAGACTCGGGAGCGGTGAGGCCATGATGTCTACCCATCCTCCCTTGCTTCCA
GAGGTTTTATAGGGGCCTTTAGTCACTTTGTCAAATCGCGTCCCCGCTGCGCAGTTTGTGGACA
AGGAGGTGATTTAACCTCCTAGAACCGAGAAGACTTAGCCTTAAGGAGCCTACAATACCGTTTG
GAGTCTTTTCACTTCTAGACGTTTGATGGACCAAATTCACTAGGATTTCCAGAAATGCTCCTCC
TCGAAGGGCGGGAAGTGCCCTTCCTGATGGTTCAGTCGGCTCTTTGCTGCTTGGGCTGGGTTTG
GTTTTTTCTTTTTTTTAAGTGCAATAATTTCTGTATAATCGTGATTTTTTTTTTTACATTCGCA
ATTCAGAATGTTGAATTGTTATCCGCCCACATCACTGATCAGTGCCACAGCCTTGGGAAGGACC
TTATCGCAGAGTTTTATCTCACCACTGAAGAGGCATGGCTACACACAGGAAGACTCGGTGACAA
ATCCTCAAAGGAAATGAGCGCGTGTGTCCCTCCCTCCAACCTCTCGAAGCTATGGGTCAGGAGT
AGGTGGGCAGAGAGAGAAGAGAGGGGTTCTACTCACACGTCAGCCGGTTTATCTCTTCCTATTT
CGAATATGAGAACCTGTGTTTCGAAGTAGAGTAGGAAAAACATTACTTGTCTGACTTGTCGTAG
TGGGTTTCTTCCTTGTTGACAGTTGGGAGTTTCTTCCGTGGCTCTTTTGAACTAGTGTCACTGT
CATGGTCCTTTTCAAACAGCCAGAGCTGACTCAACAGTTTTGAGTCTGACTCTGAACTCTGAGA
AATCTTGGTGCCTAGCCTTCTTTATTTTTCTGTCCACCCGTGTACACAAGAACAGTTTCTCCAA
GAGCTATAGGCTGTAAAAATGCACTTTCTTTCCCCACCCAGAGGAGCTGGGAATTCAGAAGTCA
GGACAACGAACTCAGCATGCTAGGACAGTCACTGGACACCGTCCCTTAAGAATACCGTTGAGCG
TCTCCGTGGATTCCGACAGGATATTCTCTGGGTTTCTTTGCATTTCTGTTGTCAGACTCATTTT
AACCCGTGTAGCTAGTGGCATTTTATTCTTTGGATTTTGTATGATTAAAGTACATGATTATGTG
TTGTGACCATAAAAGTTGTCAAAATGAGCA

hide sequence

RefSeq Acc Id:

XM_039108278 ⟹ XP_038964206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,895,207 - 172,078,060 (+)	NCBI
mRatBN7.2	4	170,164,071 - 170,346,047 (+)	NCBI

RefSeq Acc Id:

XM_039108279 ⟹ XP_038964207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,895,210 - 172,078,060 (+)	NCBI
mRatBN7.2	4	170,164,074 - 170,346,047 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_059032	(Get FASTA)	NCBI Sequence Viewer
	XP_006237633	(Get FASTA)	NCBI Sequence Viewer
	XP_017448340	(Get FASTA)	NCBI Sequence Viewer
	XP_038964206	(Get FASTA)	NCBI Sequence Viewer
	XP_038964207	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB51771	(Get FASTA)	NCBI Sequence Viewer
	BAA06409	(Get FASTA)	NCBI Sequence Viewer
	BAA08252	(Get FASTA)	NCBI Sequence Viewer
	EDM01586	(Get FASTA)	NCBI Sequence Viewer
	EDM01587	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000044055
	ENSRNOP00000044055.3
	ENSRNOP00000077071
	ENSRNOP00000077071.1

RefSeq Acc Id:	NP_059032 ⟸ NM_017336
- Peptide Label:	precursor
- UniProtKB:	Q62797 (UniProtKB/TrEMBL), A0A8I6AS38 (UniProtKB/TrEMBL), F7F9Z5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGHLPRERRGGRRLLPLLGLFVLLKIVSTFHVTVRDDNNIVVSLEASDVVSPTSVYVVRVAGES KNYFFEFEESNGTLPPPVVFKATYHGLYYIISLVVVSGNVVTKPSRSITVLTKPLPVTSVSIYD YKPSPETGVLFEIHYPEKYNVFSRVNISYWEGKDFRTMLYKDFLKGKTVFNHWLPGICYSNITF QLVSEATFNKSTLVECSGVSHEPKQHRTAPYPPRNISVRFVNLNKNNWEEPSGSFPEDSFIKPQ DAIGRDRPFHFPEETPETPASNASSGWPDPNGTEYESTSQPYWWDSASAAPENEEDFVSVLPAD YDTEATLGRTEKPTADPFSAFPVQMTLSWLPPKPPTAFDGFNILIEREGNFTDYLTVDEEAHEF VAELKEPGKYRLSVTTFSSSGACETRKSQSAKSLSFYISPTGEWIEELTEKPQHVSVHVLSSTT ALLSWTSSQENYNSTIVSVVSLTCQKQKESQRLEKQYCTQVNSSKPVIENLVPGAQYQVVMYLR KGPLIGPPSDPVTFAIVPTGIKDLMLYPLGPTAVVLSWTRPYLGVFRKYVVEMFYFNPTTMTSE WTTYYEIAATVSLTSSVRIANLLPAWYYNFRVTMVTWGDPELSCCDSSTISFITAPVAPEITSV EYFNSLLYISWTYGDATTDLSHSRMLHWMVVAEGRRKIKKSVTRNVMTAILSLPPGDIYNLSVT ACTERGSNTSMLRLVKLEPAPPKSLFAVNKTQTSVTLLWVEEGVADFFEVLCQKLGSGHDGKLQ EPVAVSSHVVTISSLLPATAYNCSVTSFSHDSPSVPTFIAVSTMVTEVNPNVVVISVLAILSIL LIGLLLVTLVILRKKHLQMARECGAGTFVNFASLEREGKLPYSWRRSVFTFLTLLPSCLWTDYL LAFYINPWSKNGLKKRKLTNPVQLDDFDSYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLP LNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKM VLQQKSRIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMVSEEEQEDWASRHFRINYADE AQDVMHFNYTAWPDHGVPPANAAESILQFVYTVRQQATKSKGPMIIHCSAGVGRTGTFIALDRL LQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWLKKKQQFCISDVIYENVSKS hide sequence

RefSeq Acc Id:

XP_006237633 ⟸ XM_006237571

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVTEVNPNVVVISVLAILSILLIGLLLVTLVILRKKHLQMARECGAGTFVNFASLEREGKLPYS
WRRSVFTFLTLLPSCLWTDYLLAFYINPWSKNGLKKRKLTNPVQLDDFDSYIKDMAKDSDYKFS
LQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNS
PQEYIATQGPLPETRNDFWKMVLQQKSRIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEM
VSEEEQEDWASRHFRINYADEAQDVMHFNYTAWPDHGVPPANAAESILQFVYTVRQQATKSKGP
MIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLM
WLKKKQQFCISDVIYENVSKS

hide sequence

RefSeq Acc Id:	XP_017448340 ⟸ XM_017592851
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5YC57 (UniProtKB/TrEMBL), F7F9Z5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGHLPRERRGGRRLLPLLGLFVLLKIVSTFHVTVRDDNNIVVSLEASDVVSPTSVYVVRVAGES KNYFFEFEESNGTLPPPVVFKATYHGLYYIISLVVVSGNVVTKPSRSITVLTKPLPVTSVSIYD YKPSPETGVLFEIHYPEKYNVFSRVNISYWEGKDFRTMLYKDFLKGKTVFNHWLPGICYSNITF QLVSEATFNKSTLVECSGVSHEPKQHRTAPYPPRNISVRFVNLNKNNWEEPSGSFPEDSFIKPQ DAIGRDRPFHFPEETPETPASNASSGWPDPNGTEYESTSQPYWWDSASAAPENEEDFVSVLPAD YDTEATLGRTEKPTADPFSAFPVQMTLSWLPPKPPTAFDGFNILIEREGNFTDYLTVDEEAHEF VAELKEPGKYRLSVTTFSSSGACETRKSQSAKSLSFYISPTGEWIEELTEKPQHVSVHVLSSTT ALLSWTSSQENYNSTIVSVVSLTCQKQKESQRLEKQYCTQVNSSKPVIENLVPGAQYQVVMYLR KGPLIGPPSDPVTFAIVPTGIKDLMLYPLGPTAVVLSWTRPYLGVFRKYVVEMFYFNPTTMTSE WTTYYEIAATVSLTSSVRIANLLPAWYYNFRVTMVTWGDPELSCCDSSTISFITAPVAPEITSV EYFNSLLYISWTYGDATTDLSHSRMLHWMVVAEGRRKIKKSVTRNVMTAILSLPPGDIYNLSVT ACTERGSNTSMLRLVKLEPAPPKSLFAVNKTQTSVTLLWVEEGVADFFEVLCQKLGSGHDGKLQ EPVAVSSHVVTISSLLPATAYNCSVTSFSHDSPSVPTFIAVSTMVTEVNPNVVVISVLAILSIL LIGLLLVTLVILRKKHLQMARECGAGTFVNFASLEREGKLPYSWSKNGLKKRKLTNPVQLDDFD SYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEE GADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSRIIVMLTQCNEKRRVKCDHYWP FTEEPIAYGDITVEMVSEEEQEDWASRHFRINYADEAQDVMHFNYTAWPDHGVPPANAAESILQ FVYTVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQ TEEQYIFIHQCVQLMWLKKKQQFCISDVIYENVSKS hide sequence

Ensembl Acc Id:

ENSRNOP00000044055 ⟸ ENSRNOT00000040576

RefSeq Acc Id:	XP_038964206 ⟸ XM_039108278
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964207 ⟸ XM_039108279
- Peptide Label:	isoform X3
- UniProtKB:	A6IMK3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095771 ⟸ ENSRNOT00000095117

Ensembl Acc Id:

ENSRNOP00000077071 ⟸ ENSRNOT00000097203

Protein Domains

Fibronectin type-III Tyrosine specific protein phosphatases Tyrosine-protein phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62797-F1-model_v2	AlphaFold	Q62797	1-1216	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62068	AgrOrtholog
BioCyc Gene	G2FUF-42576	BioCyc
Ensembl Genes	ENSRNOG00000006231	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040576	ENTREZGENE
	ENSRNOT00000040576.5	UniProtKB/TrEMBL
	ENSRNOT00000097203	ENTREZGENE
	ENSRNOT00000097203.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
InterPro	Fibronectin_type3	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	PTPRO	UniProtKB/TrEMBL
	Tyr/Dual-specificity_Pase	UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/TrEMBL
	Tyr_Pase_rcpt/non-rcpt	UniProtKB/TrEMBL
KEGG Report	rno:50677	UniProtKB/TrEMBL
NCBI Gene	50677	ENTREZGENE
PANTHER	PTHR47028	UniProtKB/TrEMBL
	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE O	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	Y_phosphatase	UniProtKB/TrEMBL
PhenoGen	Ptpro	PhenoGen
PRINTS	PRTYPHPHTASE	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_1	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_2	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_PTP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006231	RatGTEx
SMART	FN3	UniProtKB/TrEMBL
	PTPc	UniProtKB/TrEMBL
	PTPc_motif	UniProtKB/TrEMBL
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
TIGR	TC218827
UniProt	A0A8I5YC57	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS38	ENTREZGENE, UniProtKB/TrEMBL
	A6IMK3	ENTREZGENE, UniProtKB/TrEMBL
	F7F9Z5	ENTREZGENE, UniProtKB/TrEMBL
	Q62797	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Ptpro	protein tyrosine phosphatase, receptor type, O			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_homology	has similarity to Drosophila DPTP10D, also an embryonic central nervous system-specific tyrosine phosphatase	633820

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM