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Gene: Fut9 (fucosyltransferase 9) Rattus norvegicus

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Symbol:

Fut9

Name:

fucosyltransferase 9

RGD ID:

619955

Description:

Predicted to enable 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity and protein homodimerization activity. Involved in nervous system development. Predicted to be located in trans-Golgi network membrane. Orthologous to human FUT9 (fucosyltransferase 9); PARTICIPATES IN globoside metabolic pathway; lacto-series glycosphingolipid metabolic pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9; alpha-(1,3)-fucosyltransferase; alpha-(1,3)-fucosyltransferase 9; fuc-TIX; fucosyltransferase 9 (alpha (1,3) fucosyltransferase); fucosyltransferase IX; fucT-IX; galactoside 3-L-fucosyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FUT9 (fucosyltransferase 9)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fut9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fut9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FUT9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FUT9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fut9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FUT9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FUT9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fut9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fut9 (fucosyltransferase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FUT9 (fucosyltransferase 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fut9 (fucosyltransferase 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch1073-440p11.2	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Danio rerio (zebrafish):	fut9a (fucosyltransferase 9a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fut9a (fucosyltransferase 9a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FucTC	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FucTC	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	fut-3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	fut-4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FucTA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fut-5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fut9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fut9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	44,148,371 - 44,361,209 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	44,146,152 - 44,362,823 (-)	Ensembl				GRCr8
mRatBN7.2	5	39,351,815 - 39,565,256 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	39,351,819 - 39,565,130 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	41,464,393 - 41,677,219 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	43,063,396 - 43,276,231 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	42,996,762 - 43,209,609 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	40,032,855 - 40,237,591 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	40,032,855 - 40,237,591 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	44,751,837 - 44,863,523 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	5	44,660,497 - 44,662,321 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	40,716,822 - 40,934,545 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	38,275,370 - 38,475,910 (-)	NCBI		Celera
RGSC_v3.1	5	40,717,000 - 40,934,724 (-)	NCBI
Cytogenetic Map	5	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cordycepin (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

lead(0) (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

panobinostat (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

raloxifene (ISO)

SB 431542 (ISO)

tamoxifen (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycoprotein biosynthetic process (IEA,ISO)

glycosphingolipid biosynthetic process (ISO,ISS)

Lewis x epitope biosynthetic process (ISO,ISS)

lipid metabolic process (IEA)

N-glycan processing (ISO,ISS)

nervous system development (IDA)

neuron differentiation (ISO,ISS)

neuronal stem cell division (ISO,ISS)

oligosaccharide biosynthetic process (ISO)

polysaccharide biosynthetic process (ISO,ISS)

positive regulation of neuron projection development (ISO,ISS)

protein N-linked glycosylation (ISO,ISS)

protein O-linked glycosylation (ISO,ISS)

regulation of leukocyte cell-cell adhesion (ISO,ISS)

regulation of leukocyte tethering or rolling (ISO,ISS)

Cellular Component

Golgi apparatus (IEA,ISO,ISS)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA)

membrane (IEA)

trans-Golgi network (ISO,ISS)

trans-Golgi network membrane (ISO,ISS)

Molecular Function

4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity (IBA,IEA,ISO,ISS)

alpha-(1->3)-fucosyltransferase activity (ISO)

fucosyltransferase activity (IEA,NAS)

glycosyltransferase activity (IEA)

protein homodimerization activity (ISO,ISS)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

globoside metabolic pathway (IEA)

lacto-series glycosphingolipid metabolic pathway (IEA)

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning of rat alpha1,3-fucosyltransferase IX (Fuc-TIX) and comparison of the expression of Fuc-TIV and Fuc-TIX genes during rat postnatal cerebellum development.	Baboval T, etal., J Neurosci Res 2000 Oct 15;62(2):206-15.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Pax6 controls the expression of Lewis x epitope in the embryonic forebrain by regulating alpha 1,3-fucosyltransferase IX expression.	Shimoda Y, etal., J Biol Chem 2002 Jan 18;277(3):2033-9.

Additional References at PubMed

PMID:10622713	PMID:11278338	PMID:12107078	PMID:12626397	PMID:15121843	PMID:15364956	PMID:17335083	PMID:18395013	PMID:23000574	PMID:23192350	PMID:37674364

Genomics

Comparative Map Data

Fut9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	44,148,371 - 44,361,209 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	44,146,152 - 44,362,823 (-)	Ensembl				GRCr8
mRatBN7.2	5	39,351,815 - 39,565,256 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	39,351,819 - 39,565,130 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	41,464,393 - 41,677,219 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	43,063,396 - 43,276,231 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	42,996,762 - 43,209,609 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	40,032,855 - 40,237,591 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	40,032,855 - 40,237,591 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	44,751,837 - 44,863,523 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	5	44,660,497 - 44,662,321 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	40,716,822 - 40,934,545 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	38,275,370 - 38,475,910 (-)	NCBI		Celera
RGSC_v3.1	5	40,717,000 - 40,934,724 (-)	NCBI
Cytogenetic Map	5	q21	NCBI

FUT9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	96,015,974 - 96,215,612 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	96,015,436 - 96,215,612 (+)	Ensembl			hg38	GRCh38
GRCh37	6	96,463,850 - 96,663,488 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	96,570,566 - 96,770,209 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	96,570,589 - 96,760,477	NCBI
Celera	6	97,104,994 - 97,305,565 (+)	NCBI		Celera
Cytogenetic Map	6	q16.1	NCBI
HuRef	6	93,896,758 - 94,097,599 (+)	NCBI		HuRef
CHM1_1	6	96,725,919 - 96,925,506 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	97,186,913 - 97,387,800 (+)	NCBI		T2T-CHM13v2.0

Fut9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	25,609,333 - 25,800,003 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	25,609,332 - 25,800,244 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	25,609,333 - 25,800,003 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	25,609,332 - 25,800,244 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	25,536,480 - 25,727,150 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	25,699,963 - 25,890,633 (-)	NCBI		MGSCv36	mm8
Celera	4	25,322,237 - 25,513,151 (-)	NCBI		Celera
Cytogenetic Map	4	A3	NCBI
cM Map	4	10.59	NCBI

Fut9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	22,203,809 - 22,318,518 (+)	Ensembl
ChiLan1.0	NW_004955411	22,112,230 - 22,318,518 (+)	NCBI	ChiLan1.0	ChiLan1.0

FUT9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	116,062,989 - 116,260,985 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	113,941,236 - 114,139,154 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	93,857,269 - 94,048,555 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	97,744,014 - 97,935,960 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	97,932,631 - 97,933,710 (+)	Ensembl			panPan2	panpan1.1

FUT9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	54,581,280 - 54,784,072 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	54,771,426 - 54,772,505 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	54,582,005 - 54,583,084 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	55,481,655 - 55,603,595 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	55,590,962 - 55,592,041 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	54,926,591 - 54,927,670 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	54,788,110 - 54,789,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	55,035,177 - 55,036,256 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fut9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	89,115,122 - 89,310,993 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936699	1,429,015 - 1,612,291 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936699	1,428,131 - 1,612,294 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FUT9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	1	71,777,134 - 71,790,121 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FUT9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	20,966,232 - 21,165,638 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	21,162,381 - 21,163,457 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	197,188,369 - 197,382,874 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fut9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624810	9,154,818 - 9,217,177 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624810	9,152,805 - 9,403,382 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fut9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	116,852,581 - 116,853,930 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fut9
2579 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	257
Count of miRNA genes:	178
Interacting mature miRNAs:	193
Transcripts:	ENSRNOT00000011393
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	31130421	48841739	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

RH138003

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	39,538,679 - 39,538,868 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	40,211,604 - 40,211,792	NCBI	Rnor6.0
Rnor_5.0	5	44,837,536 - 44,837,724	UniSTS	Rnor5.0
RGSC_v3.4	5	40,908,558 - 40,908,746	UniSTS	RGSC3.4
Celera	5	38,449,915 - 38,450,103	UniSTS
RH 3.4 Map	5	199.1	UniSTS
Cytogenetic Map	5	q21	UniSTS

Fut9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	39,363,130 - 39,363,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	40,034,237 - 40,034,652	NCBI	Rnor6.0
Rnor_5.0	5	44,661,879 - 44,662,294	UniSTS	Rnor5.0
RGSC_v3.4	5	40,718,204 - 40,718,619	UniSTS	RGSC3.4
Celera	5	38,276,752 - 38,277,167	UniSTS
Cytogenetic Map	5	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	6	13	142	38	35	17	14	17	6	162	44	1	126	81	81	18	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB049819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF345993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011393 ⟹ ENSRNOP00000011393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	40,032,855 - 40,237,591 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113229 ⟹ ENSRNOP00000087361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,148,375 - 44,283,494 (-)	Ensembl
mRatBN7.2 Ensembl	5	39,351,819 - 39,565,130 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127777 ⟹ ENSRNOP00000109892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,158,178 - 44,259,885 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155901 ⟹ ENSRNOP00000100992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,146,152 - 44,362,823 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160477 ⟹ ENSRNOP00000108699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,147,892 - 44,360,180 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166081 ⟹ ENSRNOP00000105382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,148,109 - 44,362,823 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169939 ⟹ ENSRNOP00000101275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,146,152 - 44,362,823 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172911 ⟹ ENSRNOP00000108256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	44,158,796 - 44,361,180 (-)	Ensembl

RefSeq Acc Id:

NM_053465 ⟹ NP_445917

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	44,158,300 - 44,361,209 (-)	NCBI
mRatBN7.2	5	39,361,749 - 39,564,675 (-)	NCBI
Rnor_6.0	5	40,032,855 - 40,237,591 (-)	NCBI
Rnor_5.0	5	44,660,497 - 44,662,321 (-)	NCBI
Rnor_5.0	5	44,751,837 - 44,863,523 (-)	NCBI
RGSC_v3.4	5	40,716,822 - 40,934,545 (-)	RGD
Celera	5	38,275,370 - 38,475,910 (-)	RGD

Sequence:

show sequence

CCTGTCTGCTCTGGGCAGCGGCAACCTCGGCAGCCGGGGAGATGGGAAGAGAGCGCGCGGGGCG
TGCACCTCTGGAGCCGCCGATCTTTCCTACTCCGGTTCCCTGAGCCCCCGGCGCCACTCTCGCC
CCCTGGCTACCCACCGATTCCCGCTACGCTGCTAGGACAGCGCCGCCGTCACCGCCAGCCCTCG
TCCCGCCCGCGCCTCTCTGCCCTCACGCGCCCTGGATGGAGCTTTCCCTTGCTGGGATCGATTT
AGAATGTGATAAGTCAAGTATCTGAACACAGTGGAGTAGTTCAACACTCATCTCAGCTTTCCAT
GATATGTTCTCTACCGTGAAAAATTATGACCTCAACATCCAAAGGCATTCTTCGCCCATTTCTA
ATCGTCTGCATTATCCTGGGCTGCTTCGTGGCATGTCTACTTATCTACATCAAGCCCACCAACA
GCTGGGTCTTCAGTCCAATGGAGTCTGCAAGCTCTGTGCTGAAAATGAAAAATTTCTTCTCCAG
GAAAACTGATTATTTTAATGAAACTACTATTCTGGTTTGGGTGTGGCCATTTGGGCAGACCTTT
GACCTTACATCCTGCCAAGCCATGTTCAACATCCAAGGGTGCCATCTCACAACGGACCGCTCGT
TGTACAACAAATCCCATGCGGTCCTGATACACCACAGAGACATCAGCTGGGATCTGACTAACTT
ACCTCAGCAGGCCAGGCCGCCCTTTCAGAAATGGATTTGGATGAACTTAGAGTCACCCACTCAC
ACCCCCCAAAAGAGTGGCATTGAGCACTTGTTCAACCTGACTCTAACTTATCGCCGTGATTCAG
ATATACAAGTGCCTTACGGCTTCTTGACGGTGAGCACAAGCCCCTTTGTGTTTGAAGTGCCAAG
CAAAGAGAAGTTAGTGTGCTGGGTTGTGAGTAACTGGAATCCCGAGCATGCCAGGGTCAAGTAT
TACAACGAGCTCAGCAAGAGTATTGAAATCCACACCTATGGGCAAGCATTTGGAGAATATGTGA
ATGATAAAAATCTGATTCCCACCATATCTACTTGTAAATTTTATCTTTCCTTTGAAAACTCAAT
TCACAAAGATTACATCACAGAAAAGCTCTACAATGCATTTTTGGCTGGTTCGGTACCTGTTGTC
CTGGGACCATCTAGGGAAAACTATGAGAATTATATTCCAGCTGATTCATTCATTCATGTGGAAG
ATTTTAACTCACCCAGTGAGTTGGCAAAATATCTGAAGGAGGTTGACAAAAACAATAAGTTATA
TCTTAGTTACTTCAACTGGAGGAAGGATTTTACTGTAAACCTCCCACGGTTTTGGGAATCACAT
GCATGCCTGGCATGCGATCATGTAAAAAGGCATCAAGAATATAAGTCTGTTGGCAATTTAGAGA
AATGGTTTTGGAATTAAAATGTCCATCATCGTCACAGTGAAATAGATTAATGAGACACCATTCA
AGTGTTCAGGATAAGAAGAAACACGCTGCATTTGGGTCACAGTTTATTTTTCCTGCTCTCCCTT
GAGGACCATGTATATTTTGATGAAATTTTTAAGAGACCAGAATCAGCAAATCACTCAATTTGGT
TTTAAATTATCCTGTATATATGTGATAACAAGCACTGGAAATAATTTATTCATCATTCTCATTT
GTGAAGCATTCTGTTTTTACATTTTATAGTTGACTGTAAAGTAAGTTTGTGATTTAATTGTTTC
CACATCAATCAGATCTTTCATCTACTTGGGAAATGAAAATACATATTCTAAAATATGAAGGACT
CTTTGCCAAGTGTTATGAAATTTAGATTCTAACTTGTATAATGCTAACAAAAAAGGATTATTGA
ACCACTTAATTCTTAATCTCTCTGACTTCAGAGCTGAACACTACTCACAATTGATGTAGGTTTT
ACCTGTACCATGTTTGTGATGGTGGACTAATTGATGTAGTGAAGAAGAAAGGCAGGAAGCAGAA
ATGTTAGTAGACTCCACACTCATTTTCATTAAGTTGTTTTACAAATGCAGATCTCAATATTTTA
AGTTAAAGAAAGAAAGAAATACAATTTATGTGGTTGGGGGAGGCTGTTTGTTTTGTTTTTGTTT
TTTTTTTTTTTTTTTTTTGCCTAATAATACATGAGAGAATCTTC

hide sequence

RefSeq Acc Id:

XM_039110877 ⟹ XP_038966805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	44,148,371 - 44,360,943 (-)	NCBI
mRatBN7.2	5	39,351,815 - 39,565,256 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_445917	(Get FASTA)	NCBI Sequence Viewer
	XP_038966805	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK16591	(Get FASTA)	NCBI Sequence Viewer
	BAB40953	(Get FASTA)	NCBI Sequence Viewer
	EDL98546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000087361
	ENSRNOP00000087361.1
	ENSRNOP00000100992
GenBank Protein	Q99JB3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445917 ⟸ NM_053465

- UniProtKB:

Q99JB3 (UniProtKB/Swiss-Prot), A6IIH6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSTSKGILRPFLIVCIILGCFVACLLIYIKPTNSWVFSPMESASSVLKMKNFFSRKTDYFNET
TILVWVWPFGQTFDLTSCQAMFNIQGCHLTTDRSLYNKSHAVLIHHRDISWDLTNLPQQARPPF
QKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFLTVSTSPFVFEVPSKEKLVCWV
VSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVNDKNLIPTISTCKFYLSFENSIHKDYITEK
LYNAFLAGSVPVVLGPSRENYENYIPADSFIHVEDFNSPSELAKYLKEVDKNNKLYLSYFNWRK
DFTVNLPRFWESHACLACDHVKRHQEYKSVGNLEKWFWN

hide sequence

Ensembl Acc Id:

ENSRNOP00000011393 ⟸ ENSRNOT00000011393

RefSeq Acc Id:	XP_038966805 ⟸ XM_039110877
- Peptide Label:	isoform X1
- UniProtKB:	Q99JB3 (UniProtKB/Swiss-Prot), A6IIH6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000087361 ⟸ ENSRNOT00000113229

Ensembl Acc Id:

ENSRNOP00000108256 ⟸ ENSRNOT00000172911

Ensembl Acc Id:

ENSRNOP00000109892 ⟸ ENSRNOT00000127777

Ensembl Acc Id:

ENSRNOP00000108699 ⟸ ENSRNOT00000160477

Ensembl Acc Id:

ENSRNOP00000101275 ⟸ ENSRNOT00000169939

Ensembl Acc Id:

ENSRNOP00000100992 ⟸ ENSRNOT00000155901

Ensembl Acc Id:

ENSRNOP00000105382 ⟸ ENSRNOT00000166081

Protein Domains

Fucosyltransferase C-terminal Fucosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99JB3-F1-model_v2	AlphaFold	Q99JB3	1-359	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619955	AgrOrtholog
BioCyc Gene	G2FUF-41774	BioCyc
BioCyc Pathway	PWY-7831 [ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide]	BioCyc
BioCyc Pathway Image	PWY-7831	BioCyc
Ensembl Genes	ENSRNOG00000008475	Ensembl
	ENSRNOG00000070149	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000113229	ENTREZGENE
	ENSRNOT00000113229.1	UniProtKB/Swiss-Prot
	ENSRNOT00000155901	ENTREZGENE
Gene3D-CATH	3.40.50.11660	UniProtKB/Swiss-Prot
InterPro	Glyco_tran_10_C	UniProtKB/Swiss-Prot
	Glyco_tran_10_N	UniProtKB/Swiss-Prot
	Glyco_trans_10	UniProtKB/Swiss-Prot
	GT10-like_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:84597	UniProtKB/Swiss-Prot
NCBI Gene	84597	ENTREZGENE
PANTHER	4-GALACTOSYL-N-ACETYLGLUCOSAMINIDE 3-ALPHA-L-FUCOSYLTRANSFERASE 9	UniProtKB/Swiss-Prot
	PTHR11929	UniProtKB/Swiss-Prot
Pfam	Glyco_tran_10_N	UniProtKB/Swiss-Prot
	Glyco_transf_10	UniProtKB/Swiss-Prot
PhenoGen	Fut9	PhenoGen
RatGTEx	ENSRNOG00000008475	RatGTEx
	ENSRNOG00000070149	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/Swiss-Prot
UniProt	A0ABK0M0G9_RAT	UniProtKB/TrEMBL
	A6IIH6	ENTREZGENE, UniProtKB/TrEMBL
	FUT9_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Fut9	fucosyltransferase 9	Fut9	fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Fut9	fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	Fut9	fucosyltransferase 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Fut9	fucosyltransferase 9		fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	Name updated	1299863	APPROVED
2002-08-07	Fut9	fucosyltransferase 9 (alpha (1,3) fucosyltransferase)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	expression regulated by the transcription factor Pax6	632768

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Annotations - KEGG (archival)

BioCyc Pathways