Galr2 (galanin receptor 2) - Rat Genome Database

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Pathways
Gene: Galr2 (galanin receptor 2) Rattus norvegicus
Analyze
Symbol: Galr2
Name: galanin receptor 2
RGD ID: 2657
Description: Enables galanin receptor activity and neuropeptide binding activity. Involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; inositol phosphate metabolic process; and phosphatidylinositol metabolic process. Predicted to be located in cilium. Predicted to be active in plasma membrane. Orthologous to human GALR2 (galanin receptor 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GAL2-R; galanin receptor type 2; GALR-2; LOC103690156
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Note: In Rnor_6.0 (AR 105), the loci 29234 and 103690156 are placed twice on chromosome 10. This is likely an assembly error and not a true gene duplication. [28 May 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,012,086 - 102,016,057 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10102,013,370 - 102,016,055 (+)EnsemblGRCr8
mRatBN7.210101,513,689 - 101,517,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,514,471 - 101,517,176 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10106,571,364 - 106,573,793 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,034,454 - 106,036,883 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,435,666 - 101,438,094 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,156,793 - 105,159,221 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,156,632 - 105,237,611 (+)Ensemblrn6Rnor6.0
Rnor_5.010104,900,150 - 104,902,315 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410106,394,006 - 106,396,171 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10100,087,566 - 100,089,731 (+)NCBICelera
RGSC_v3.110106,408,502 - 106,410,685 (+)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Galanin enhances corticosterone secretion from dispersed rat adrenocortical cells through the activation of GAL-R1 and GAL-R2 receptors coupled to the adenylate cyclase-dependent signaling cascade. Andreis PG, etal., Int J Mol Med. 2007 Jan;19(1):149-55.
2. Two genes in the rat homologous to human NKG2. Berg SF, etal., Eur J Immunol 1998 Feb;28(2):444-50
3. Expression of GalR1 and GalR2 galanin receptor messenger ribonucleic acid in proopiomelanocortin neurons of the rat arcuate nucleus: effect of testosterone. Bouret S, etal., Endocrinology 2000 May;141(5):1780-94
4. Cloning, pharmacological characterization and distribution of a novel galanin receptor. Fathi Z, etal., Brain Res Mol Brain Res 1997 Nov;51(1-2):49-59.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Medical College of Ohio's SSLP Data file transfer Rapp J, Dene H,Direct Electronic Data transfer Feb.(5)2001 . Medical College of Ohio Department of Physiology and Molecular Medicine.
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Expression cloning of a rat hypothalamic galanin receptor coupled to phosphoinositide turnover. Smith KE, etal., J Biol Chem 1997 Sep 26;272(39):24612-6.
13. Differential intracellular signaling of the GalR1 and GalR2 galanin receptor subtypes. Wang S, etal., Biochemistry. 1998 May 12;37(19):6711-7.
14. Molecular cloning and pharmacological characterization of a new galanin receptor subtype. Wang S, etal., Mol Pharmacol 1997 Sep;52(3):337-43.
15. Visualization of a functionally enhanced GFP-tagged galanin R2 receptor in PC12 cells: constitutive and ligand-induced internalization. Xia S, etal., Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15207-12. Epub 2004 Oct 7.
16. The role of galanin system in modulating depression, anxiety, and addiction-like behaviors after chronic restraint stress. Zhao X, etal., Neuroscience. 2013 Aug 29;246:82-93. doi: 10.1016/j.neuroscience.2013.04.046. Epub 2013 Apr 30.
Additional References at PubMed
PMID:9108306   PMID:9473722   PMID:9832121   PMID:12533601   PMID:15885774   PMID:15944003   PMID:15944004   PMID:16248891   PMID:16626647   PMID:17287581   PMID:17993248   PMID:18172432  
PMID:18272487   PMID:20974494   PMID:21496293   PMID:21894515   PMID:24517231   PMID:24602615   PMID:26666529   PMID:27349435   PMID:28062253   PMID:28154160   PMID:28378856   PMID:29928003  
PMID:33632048   PMID:38622072  


Genomics

Comparative Map Data
Galr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,012,086 - 102,016,057 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10102,013,370 - 102,016,055 (+)EnsemblGRCr8
mRatBN7.210101,513,689 - 101,517,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,514,471 - 101,517,176 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10106,571,364 - 106,573,793 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,034,454 - 106,036,883 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,435,666 - 101,438,094 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,156,793 - 105,159,221 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,156,632 - 105,237,611 (+)Ensemblrn6Rnor6.0
Rnor_5.010104,900,150 - 104,902,315 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410106,394,006 - 106,396,171 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10100,087,566 - 100,089,731 (+)NCBICelera
RGSC_v3.110106,408,502 - 106,410,685 (+)NCBI
Cytogenetic Map10q32.1NCBI
GALR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,071,962 - 76,077,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,074,781 - 76,077,537 (+)Ensemblhg38GRCh38
GRCh371774,070,862 - 74,073,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,582,487 - 71,585,168 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341771,582,486 - 71,585,168NCBI
Celera1770,664,718 - 70,667,399 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,499,823 - 69,502,494 (+)NCBIHuRef
CHM1_11774,135,817 - 74,138,498 (+)NCBICHM1_1
T2T-CHM13v2.01776,964,823 - 76,974,102 (+)NCBIT2T-CHM13v2.0
Galr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,170,520 - 116,174,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,171,765 - 116,174,764 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3811116,280,106 - 116,283,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,280,939 - 116,283,938 (+)Ensemblmm10GRCm38
MGSCv3711116,142,253 - 116,145,252 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611116,097,029 - 116,100,005 (+)NCBIMGSCv36mm8
Celera11128,045,589 - 128,048,587 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.1NCBI
Galr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,172,366 - 6,176,084 (-)Ensembl
ChiLan1.0NW_0049555066,172,366 - 6,178,061 (-)NCBIChiLan1.0ChiLan1.0
GALR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,114,145 - 92,123,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,939,371 - 96,948,006 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,019,383 - 70,028,689 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,578,072 - 75,580,806 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,578,072 - 75,580,806 (+)EnsemblpanPan2panpan1.1
GALR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,559,710 - 4,562,474 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,560,067 - 4,562,463 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha95,240,420 - 5,242,990 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.095,230,227 - 5,232,798 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,230,403 - 5,232,798 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,270,157 - 5,272,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,379,443 - 5,382,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,440,143 - 5,442,711 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Galr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,172,746 - 5,175,859 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,236,061 - 1,239,113 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,236,281 - 1,239,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,360,232 - 5,363,059 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1125,360,232 - 5,364,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,262,826 - 5,267,911 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,599,934 - 45,603,207 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,600,038 - 45,602,561 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607716,346,223 - 16,349,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,983,254 - 5,985,596 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248015,982,870 - 5,987,756 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Galr2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1967,786,885 - 67,789,747 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Galr2
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:119
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000012523, ENSRNOT00000075548
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat

Markers in Region
Galr2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,514,753 - 101,514,983 (+)MAPPERmRatBN7.2
Rnor_6.010105,235,266 - 105,235,495NCBIRnor6.0
Rnor_6.010105,156,799 - 105,157,028NCBIRnor6.0
Rnor_5.010104,825,387 - 104,825,616UniSTSRnor5.0
Rnor_5.010104,900,147 - 104,900,376UniSTSRnor5.0
RGSC_v3.410106,394,003 - 106,394,232UniSTSRGSC3.4
Celera10100,087,563 - 100,087,792UniSTS
Cytogenetic Map10q32.3UniSTS
RH131561  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,516,894 - 101,517,074 (+)MAPPERmRatBN7.2
Rnor_6.010105,237,407 - 105,237,586NCBIRnor6.0
Rnor_6.010105,158,940 - 105,159,119NCBIRnor6.0
Rnor_5.010104,827,528 - 104,827,707UniSTSRnor5.0
Rnor_5.010104,902,288 - 104,902,467UniSTSRnor5.0
RGSC_v3.410106,396,144 - 106,396,323UniSTSRGSC3.4
Celera10100,089,704 - 100,089,883UniSTS
Cytogenetic Map10q32.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 43 123 33 36 17 82 17 251 146 11 114 70 68 19 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000012523   ⟹   ENSRNOP00000012523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl10105,156,822 - 105,158,947 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075548   ⟹   ENSRNOP00000067445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl10105,235,289 - 105,237,414 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086288   ⟹   ENSRNOP00000073780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10102,013,370 - 102,016,055 (+)Ensembl
mRatBN7.2 Ensembl10101,514,471 - 101,517,176 (+)Ensembl
Rnor_6.0 Ensembl10105,156,632 - 105,237,611 (+)Ensembl
RefSeq Acc Id: NM_019172   ⟹   NP_062045
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,013,626 - 102,016,054 (+)NCBI
mRatBN7.210101,514,748 - 101,517,176 (+)NCBI
Rnor_6.010105,156,793 - 105,159,221 (+)NCBI
Rnor_5.010104,900,150 - 104,902,315 (+)NCBI
RGSC_v3.410106,394,006 - 106,396,171 (+)RGD
Celera10100,087,566 - 100,089,731 (+)RGD
Sequence:
RefSeq Acc Id: XM_039085710   ⟹   XP_038941638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,013,886 - 102,016,057 (+)NCBI
mRatBN7.210101,515,008 - 101,517,176 (+)NCBI
RefSeq Acc Id: XM_039085711   ⟹   XP_038941639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,012,086 - 102,016,057 (+)NCBI
mRatBN7.210101,513,689 - 101,517,176 (+)NCBI
RefSeq Acc Id: NP_062045   ⟸   NM_019172
- UniProtKB: O08726 (UniProtKB/Swiss-Prot),   A6HKV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038941639   ⟸   XM_039085711
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038941638   ⟸   XM_039085710
- Peptide Label: isoform X1
- UniProtKB: A6HKV5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000073780   ⟸   ENSRNOT00000086288
Ensembl Acc Id: ENSRNOP00000012523   ⟸   ENSRNOT00000012523
Ensembl Acc Id: ENSRNOP00000067445   ⟸   ENSRNOT00000075548
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08726-F1-model_v2 AlphaFold O08726 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2657 AgrOrtholog
BioCyc Gene G2FUF-22615 BioCyc
Ensembl Genes ENSRNOG00000061733 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086288 ENTREZGENE
  ENSRNOT00000086288.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GAL2_rcpt UniProtKB/Swiss-Prot
  Galanin_rcpt UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
KEGG Report rno:29234 UniProtKB/Swiss-Prot
NCBI Gene 29234 ENTREZGENE
PANTHER GALANIN RECEPTOR TYPE 2-LIKE ISOFORM X2 UniProtKB/Swiss-Prot
  LEUCOKININ RECEPTOR-RELATED UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Galr2 PhenoGen
PRINTS GALANIN2R UniProtKB/Swiss-Prot
  GALANINR UniProtKB/Swiss-Prot
  GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000061733 RatGTEx
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A6HKV4 ENTREZGENE, UniProtKB/TrEMBL
  A6HKV5 ENTREZGENE, UniProtKB/TrEMBL
  GALR2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Galr2  galanin receptor 2  LOC103690156  galanin receptor type 2  Data merged from RGD:9251670 737654 PROVISIONAL
2014-08-25 LOC103690156  galanin receptor type 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Galr2  galanin receptor 2      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the brain 69841
gene_expression expressed by POMC (precursor molecule for the opioid peptide beta-endorphin) neurons in the rostral parts of the nucleus 61034
gene_function receptor for neuropeptide galanin 69841
gene_process involved in the control of pituitary functions and feeding behavior and in modulating POMC neuron activity 69841
gene_regulation expression modulated by testosterone 61034