Ctf1 (cardiotrophin 1) - Rat Genome Database

Name: Ctf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ctf1 (cardiotrophin 1) Rattus norvegicus

Analyze

Symbol:

Ctf1

Name:

cardiotrophin 1

RGD ID:

2442

Description:

Enables cytokine activity and leukemia inhibitory factor receptor binding activity. Involved in leukemia inhibitory factor signaling pathway and nervous system development. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Biomarker of hypertension and hypertrophic cardiomyopathy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human CTF1 (cardiotrophin 1); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (+)-pilocarpine; (+)-schisandrin B; 1,2,4-trimethylbenzene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cardiotrophin-1; CT-1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTF1 (cardiotrophin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ctf1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctf1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTF1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTF1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctf1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTF1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103231119 (cardiotrophin-1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctf1 (cardiotrophin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ctf1 (cardiotrophin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CTF1 (cardiotrophin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	191,758,512 - 191,771,259 (+)	NCBI		GRCr8
mRatBN7.2	1	182,328,035 - 182,336,346 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	182,328,090 - 182,333,335 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	190,678,674 - 190,683,883 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,864,766 - 197,869,976 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	190,535,271 - 190,540,479 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	199,162,319 - 199,168,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	199,163,086 - 199,168,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	206,186,511 - 206,191,930 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	187,001,445 - 187,006,655 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	187,151,325 - 187,156,536 (+)	NCBI
Celera	1	179,979,246 - 179,984,456 (+)	NCBI		Celera
Cytogenetic Map	1	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

abdominal obesity-metabolic syndrome (ISS)

branched-chain keto acid dehydrogenase kinase deficiency (ISO)

Cardiomegaly (ISO)

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

familial hypertrophic cardiomyopathy (ISO)

generalized epilepsy with febrile seizures plus 9 (ISO)

genetic disease (ISO)

Hypercholesterolemia (ISO)

hypertension (IEP,ISO)

hypertrophic cardiomyopathy (IEP,ISO)

Hypotension (ISO)

Insulin Resistance (ISO)

kidney disease (ISO)

Left Ventricular Hypertrophy (ISO)

Necrosis (ISO)

obesity (ISO)

type 2 diabetes mellitus (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (EXP)

(+)-schisandrin B (EXP)

1,2,4-trimethylbenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxy-17beta-estradiol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (EXP)

amitrole (EXP)

ammonium chloride (EXP)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

apocynin (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

carmustine (ISO)

CGP 52608 (ISO)

cis-caffeic acid (ISO)

cobalt dichloride (ISO)

coumarin (EXP)

Cuprizon (EXP)

diarsenic trioxide (ISO)

dibenziodolium (ISO)

dioxygen (ISO)

dobutamine (ISO)

flutamide (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

isoprenaline (EXP)

leflunomide (EXP)

LY294002 (ISO)

mancozeb (ISO)

meglumine amidotrizoate (EXP)

menadione (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

mevalonic acid (EXP)

nitric oxide (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

pirinixic acid (ISO)

resveratrol (EXP)

simvastatin (EXP)

sodium arsenite (ISO)

Soman (EXP)

spironolactone (EXP)

sunitinib (EXP)

tetrachloromethane (EXP)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trans-caffeic acid (ISO)

triphenyl phosphate (EXP)

Triptolide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

valsartan (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell surface receptor signaling pathway (IBA,IEA)

immune response (IEA)

leukemia inhibitory factor signaling pathway (IMP)

nervous system development (IDA)

neuron development (IEA,ISO)

positive regulation of tyrosine phosphorylation of STAT protein (IBA,IEA,ISO)

signal transduction (IEA)

Cellular Component

extracellular region (IBA,IEA)

extracellular space (IEA)

Molecular Function

cytokine activity (IBA,IEA,IMP,TAS)

leukemia inhibitory factor receptor binding (IMP)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cytokine mediated signaling pathway (IEA)

Jak-Stat signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The cytoprotective effects of the glycoprotein 130 receptor-coupled cytokine, cardiotrophin-1, require activation of NF-kappa B.	Craig R, etal., J Biol Chem 2001 Oct 5;276(40):37621-9.
2.	Genetic variants in the promoter (g983G>T) and coding region (A92T) of the human cardiotrophin-1 gene (CTF1) in patients with dilated cardiomyopathy.	Erdmann J, etal., Hum Mutat. 2000 Nov;16(5):448.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	cDNA cloning of rat cardiotrophin-1 (CT-1): augmented expression of CT-1 gene in ventricle of genetically hypertensive rats.	Ishikawa M, etal., Biochem Biophys Res Commun 1996 Feb 15;219(2):377-81.
5.	Is plasma cardiotrophin-1 a marker of hypertensive heart disease?	Lopez B, etal., J Hypertens. 2005 Mar;23(3):625-32.
6.	Development of cardiac hypertrophy by sunitinib in vivo and in vitro rat cardiomyocytes is influenced by the aryl hydrocarbon receptor signaling pathway.	Maayah ZH, etal., Arch Toxicol. 2014 Mar;88(3):725-38. doi: 10.1007/s00204-013-1159-5. Epub 2013 Nov 19.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Comparison of the effects of HGF, BDNF, CT-1, CNTF, and the branchial arches on the growth of embryonic cranial motor neurons.	Naeem A, etal., J Neurobiol 2002 May;51(2):101-14.
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	Cardiotrophin-1 and urocortin cause protection by the same pathway and hypertrophy via distinct pathways in cardiac myocytes.	Railson JE, etal., Cytokine 2002 Mar 7;17(5):243-53.
12.	GOA pipeline	RGD automated data pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
16.	Hypertrophic responses to cardiotrophin-1 are not mediated by STAT3, but via a MEK5-ERK5 pathway in cultured cardiomyocytes.	Takahashi N, etal., J Mol Cell Cardiol. 2005 Jan;38(1):185-92. Epub 2004 Dec 10.
17.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:14674704	PMID:15489334	PMID:15659589	PMID:15716414	PMID:19327894	PMID:20216087	PMID:21279379	PMID:21912637	PMID:21926338	PMID:22733458	PMID:22787135	PMID:23064267
PMID:23277190

Genomics

Comparative Map Data

Ctf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	191,758,512 - 191,771,259 (+)	NCBI		GRCr8
mRatBN7.2	1	182,328,035 - 182,336,346 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	182,328,090 - 182,333,335 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	190,678,674 - 190,683,883 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,864,766 - 197,869,976 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	190,535,271 - 190,540,479 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	199,162,319 - 199,168,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	199,163,086 - 199,168,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	206,186,511 - 206,191,930 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	187,001,445 - 187,006,655 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	187,151,325 - 187,156,536 (+)	NCBI
Celera	1	179,979,246 - 179,984,456 (+)	NCBI		Celera
Cytogenetic Map	1	q37	NCBI

CTF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	30,895,846 - 30,903,560 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	30,896,614 - 30,903,547 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	30,907,935 - 30,914,881 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	30,815,429 - 30,822,382 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	30,815,428 - 30,822,381	NCBI
Celera	16	29,382,737 - 29,389,814 (-)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	28,470,690 - 28,477,682 (+)	NCBI		HuRef
CHM1_1	16	32,225,018 - 32,231,972 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	31,283,287 - 31,291,024 (+)	NCBI		T2T-CHM13v2.0

Ctf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	127,311,872 - 127,317,360 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	127,311,908 - 127,317,364 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	127,712,676 - 127,718,188 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	127,712,736 - 127,718,192 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	134,856,250 - 134,861,699 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	127,503,884 - 127,509,333 (+)	NCBI		MGSCv36	mm8
Celera	7	127,551,798 - 127,557,251 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.69	NCBI

Ctf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955493	7,735,996 - 7,737,559 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	34,101,941 - 34,109,044 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	38,903,404 - 38,910,508 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	24,065,866 - 24,072,973 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	31,263,009 - 31,269,439 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

CTF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	17,299,561 - 17,303,095 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	17,299,561 - 17,303,095 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	18,874,611 - 18,878,145 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	17,427,691 - 17,433,408 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	17,406,389 - 17,433,403 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	17,230,218 - 17,233,760 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,149,372 - 17,152,903 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	17,461,913 - 17,465,457 (-)	NCBI		UU_Cfam_GSD_1.0

Ctf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	125,188,961 - 125,193,420 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936501	13,286,821 - 13,291,280 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	17,539,941 - 17,544,396 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	17,539,927 - 17,545,250 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	17,955,024 - 17,960,632 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103231119
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	27,579,175 - 27,586,779 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	27,579,987 - 27,585,759 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	1,878,594 - 1,886,866 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	13,976,308 - 13,979,327 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctf1
29 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	105
Count of miRNA genes:	83
Interacting mature miRNAs:	99
Transcripts:	ENSRNOT00000025646
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383668	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383668	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	178810256	188377506	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	181746937	196383668	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	181829673	224569684	Rat

Markers in Region

RH133519

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	182,332,974 - 182,333,193 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	199,167,936 - 199,168,154	NCBI	Rnor6.0
Rnor_5.0	1	206,191,567 - 206,191,785	UniSTS	Rnor5.0
RGSC_v3.4	1	187,006,295 - 187,006,513	UniSTS	RGSC3.4
Celera	1	179,984,096 - 179,984,314	UniSTS
Cytogenetic Map	1	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		2	2		2				27	25	1
Low	2	43	55	39	19	39	8	11	74	8	16	10	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D78591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025646 ⟹ ENSRNOP00000025646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	182,328,784 - 182,333,335 (+)	Ensembl
Rnor_6.0 Ensembl	1	199,163,086 - 199,168,296 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103205 ⟹ ENSRNOP00000089496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	182,328,090 - 182,333,335 (+)	Ensembl

RefSeq Acc Id:

NM_017129 ⟹ NP_058825

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,602 - 191,763,812 (+)	NCBI
mRatBN7.2	1	182,328,125 - 182,333,335 (+)	NCBI
Rnor_6.0	1	199,163,086 - 199,168,296 (+)	NCBI
Rnor_5.0	1	206,186,511 - 206,191,930 (+)	NCBI
RGSC_v3.4	1	187,001,445 - 187,006,655 (+)	RGD
Celera	1	179,979,246 - 179,984,456 (+)	RGD

Sequence:

show sequence

GGTGTGTTGAAGGAAACAGGATCAGCCTGGGGCCAGCATGAGCCAGAGGGAGGGAAGTCTGGAA
GACCACCAGACTGACTCCTCATTCTCATTCCTACCCCATTTGGAGGCCAAGATCCGACAGACAC
ACAACCTTGCACGCCTCCTGACCAAATATGCAGACCAATTGCTGGAGGAATATGTGCAGCAACA
GGGAGAGCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGCCTGAGTGGC
CCGGCTCCGAGCCACGCGGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCTTGA
GTGCTCTGCCCGCGCTATTGGATGCTGTGCGCCGCCGCCAGGCGGAGCTGAACCCACGCGCCCC
GCGCCTACTGCGGAGCCTGGAGGACGCTGCCCGCCAGGTTCGGGCCCTGGGCGCCGCGGTGGAG
ACCGTGCTGGCCGCTCTGGGCGCTGCAGCCCGCGGGCCCGTGCCAGAGCCTGTCGCCACCTCCG
CCCTCTTCACCTCCAACAGTGCGGCAGGCGTCTTCTCAGCTAAGGTGCTGGGGCTCCACGTGTG
CGGCCTCTATGGCGAGTGGGTGAGCCGCACCGAGGGTGACCTGGGCCAACTGGTGCCAGGGGGC
GTTGCCTGAGACTCAGTACTTGTTCTTGCAAGCTCACTCTGTCCCGCCTCTTCGGCTTCTAATT
CTCCGTCTCTCCATCTATGTCATCCATGTGTGTTCTTGGGCTGTCCCTATCTTTCTGCATTGTG
TGATCTCTTTCTCTTCTGCTCTCGCCTCCTCAGGGAGCTTCTTGTGCCCACTAGTTTCTCATTT
TGTCTTTCTGTCTTGAACTCTTCTGTTTCCAAGAGGTTTCTGTTTCTGTTTCCTTGTCTCTTGG
TTCTTTCTTTCTTTGCTTGCTTGCTTGTTTGTTTTTGAGACAGGGTCTTACCATATAGCTCTAG
GTGGCCTGGAACTTGCTGTGTAGGCCAGCCTGGCCTCGAACTCATAGAAATTCACCTGCCTCTG
ACTCCCAATTTCCCCATCTGTCTCCCTGTGGTCTATATGGGTAGGTGTAACTCTTACTTCATTT
CATGGAGGTGACATTTTTCTCCTTTCAATTTCTTTGTTCTTTACTAACCAGAAAAGTGCCTACT
TGTCCCCTGGTGGCAAGACCACCCACCCTCAGGACCTTCCTTCCCACCAGTTCCTTTGTAGGCA
AATCCCTCCCCCTTTGAGGTCCTCCCATTTCTTACCTCCCTACTGTGTTTTCAATGGCCCCCAG
TCCTTAGGCTGGTCAATGGGAAGGGAAGGGCAGAAAAACATCTTAAGAGTTTTATTTGAGAATA
AATTAAATTTTTGTAAATAAATTGTTTAACAATAAAACTAAAGTTTTATGAAGC

hide sequence

RefSeq Acc Id:

XM_006230221 ⟹ XP_006230283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,580 - 191,763,815 (+)	NCBI
mRatBN7.2	1	182,328,106 - 182,333,338 (+)	NCBI
Rnor_6.0	1	199,162,319 - 199,168,296 (+)	NCBI
Rnor_5.0	1	206,186,511 - 206,191,930 (+)	NCBI

Sequence:

show sequence

AAAAAAAAGTAGGTTGCAAAAGGTGTGCCTACACTCCATTATCTGAAACCTGAAACCAATGTGG
ATCCTCTGTGCCAGTGCCCAAGGCGCTTGGGAACCAATAGTAGAGGCAAGTGTGTCCAGTCCTT
TCAGAGTCTACCCTGGGTTGATGAGTCGCTGTTTGGGTGTGTCCTCTAAGCTTGTGTTCACCTG
TGTAGAAGACTGGGTCCAAACGCCTTAGTATATCTGCCTATGTGTGGGAGGGTTTGTAATGAAT
GGTAAGTGAGGGGCAGGCTGTCTCTCTTCTGATCAGTGTGACAGAGAAAGTAGAAGGTATCCAA
GTTAACTAGACCGGGGGTGCATGCCTTAGGTGCACCCTAACCTAAACAGGGCTCCCCTGGCCTC
TCTTTGTCTTCCCCCAAAAGGAGGACCTGATGGCATTCTTCTCCCGCCAGTCCTGCACCTTTCC
TCTCGGGTTTCCCAGCTTTTCCCTCCAAAGCAGCCAATAATCTATCTCAGGTCTGAGCCTGAGT
CTCCTCCCAACAGGACACAGAACTGCGTTTAAAGGCCCAAGTTCCCATTCACTGTGCCAACACC
TGCCTCCCAATTCTGGCCCCTTCCCAGTCTAAGCTCACAAGCCGGTTACTGAGCTCTGGGCCAA
GGAATTTTGCCTGAAAGTAATGGTGGGAAGGAAATATTTGGGGTCTGAGCTATGATTGGCCGAG
CCCGAGCCACGCCCCTAGCCCTTTCCCCCTTTTTCCCCCCCTCCCCTCCTCCTCCCCGGTAAGG
GTGTGTTGAAGGAAACAGGATCAGCCTGGGGCCAGCATGAGCCAGAGGGAGGGAAGTCTGGACC
ACCAGACTGACTCCTCATTCTCATTCCTACCCCATTTGGAGGCCAAGATCCGACAGACACACAA
CCTTGCACGCCTCCTGACCAAATATGCAGACCAATTGCTGGAGGAATATGTGCAGCAACAGGGA
GAGCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGCCTGAGTGGCCCGG
CTCCGAGCCACGCGGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCTTGAGTGC
TCTGCCCGCGCTATTGGATGCTGTGCGCCGCCGCCAGGCGGAGCTGAACCCACGCGCCCCGCGC
CTACTGCGGAGCCTGGAGGACGCTGCCCGCCAGGTTCGGGCCCTGGGCGCCGCGGTGGAGACCG
TGCTGGCCGCTCTGGGCGCTGCAGCCCGCGGGCCCGTGCCAGAGCCTGTCGCCACCTCCGCCCT
CTTCACCTCCAACAGTGCGGCAGGCGTCTTCTCAGCTAAGGTGCTGGGGCTCCACGTGTGCGGC
CTCTATGGCGAGTGGGTGAGCCGCACCGAGGGTGACCTGGGCCAACTGGTGCCAGGGGGCGTTG
CCTGAGACTCAGTACTTGTTCTTGCAAGCTCACTCTGTCCCGCCTCTTCGGCTTCTAATTCTCC
GTCTCTCCATCTATGTCATCCATGTGTGTTCTTGGGCTGTCCCTATCTTTCTGCATTGTGTGAT
CTCTTTCTCTTCTGCTCTCGCCTCCTCAGGGAGCTTCTTGTGCCCACTAGTTTCTCATTTTGTC
TTTCTGTCTTGAACTCTTCTGTTTCCAAGAGGTTTCTGTTTCTGTTTCCTTGTCTCTTGGTTCT
TTCTTTCTTTGCTTGCTTGCTTGTTTGTTTTTGAGACAGGGTCTTACCATATAGCTCTAGGTGG
CCTGGAACTTGCTGTGTAGGCCAGCCTGGCCTCGAACTCATAGAAATTCACCTGCCTCTGACTC
CCAATTTCCCCATCTGTCTCCCTGTGGTCTATATGGGTAGGTGTAACTCTTACTTCATTTCATG
GAGGTGACATTTTTCTCCTTTCAATTTCTTTGTTCTTTACTAACCAGAAAAGTGCCTACTTGTC
CCCTGGTGGCAAGACCACCCACCCTCAGGACCTTCCTTCCCACCAGTTCCTTTGTAGGCAAATC
CCTCCCCCTTTGAGGTCCTCCCATTTCTTACCTCCCTACTGTGTTTTCAATGGCCCCCAGTCCT
TAGGCTGGTCAATGGGAAGGGAAGGGCAGAAAAACATCTTAAGAGTTTTATTTGAGAATAAATT
AAATTTTTGTAAATAAATTGTTTAACAATAAAACTAAAGTTTTATGAAGC

hide sequence

RefSeq Acc Id:

XM_039103132 ⟹ XP_038959060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,512 - 191,771,259 (+)	NCBI
mRatBN7.2	1	182,328,035 - 182,336,332 (+)	NCBI

RefSeq Acc Id:

XM_039103137 ⟹ XP_038959065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,512 - 191,771,259 (+)	NCBI
mRatBN7.2	1	182,328,035 - 182,336,346 (+)	NCBI

RefSeq Acc Id:

XM_063282760 ⟹ XP_063138830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,573 - 191,771,259 (+)	NCBI

RefSeq Acc Id:

XM_063282761 ⟹ XP_063138831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,750 - 191,771,259 (+)	NCBI

RefSeq Acc Id:

XM_063282762 ⟹ XP_063138832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,785 - 191,771,259 (+)	NCBI

RefSeq Acc Id:

XM_063282763 ⟹ XP_063138833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,752 - 191,763,815 (+)	NCBI

RefSeq Acc Id:

XM_063282764 ⟹ XP_063138834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	191,758,512 - 191,769,976 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_058825	(Get FASTA)	NCBI Sequence Viewer
	XP_006230283	(Get FASTA)	NCBI Sequence Viewer
	XP_038959060	(Get FASTA)	NCBI Sequence Viewer
	XP_038959065	(Get FASTA)	NCBI Sequence Viewer
	XP_063138830	(Get FASTA)	NCBI Sequence Viewer
	XP_063138831	(Get FASTA)	NCBI Sequence Viewer
	XP_063138832	(Get FASTA)	NCBI Sequence Viewer
	XP_063138833	(Get FASTA)	NCBI Sequence Viewer
	XP_063138834	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH72690	(Get FASTA)	NCBI Sequence Viewer
	BAA11427	(Get FASTA)	NCBI Sequence Viewer
	EDM17243	(Get FASTA)	NCBI Sequence Viewer
	EDM17244	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025646.2
	ENSRNOP00000089496.1
GenBank Protein	Q63086	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_058825 ⟸ NM_017129

- UniProtKB:

Q63086 (UniProtKB/Swiss-Prot), A6I9T6 (UniProtKB/TrEMBL), A0A8L2UK35 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQREGSLEDHQTDSSFSFLPHLEAKIRQTHNLARLLTKYADQLLEEYVQQQGEPFGLPGFSPP
RLPLAGLSGPAPSHAGLPVSERLRQDAAALSALPALLDAVRRRQAELNPRAPRLLRSLEDAARQ
VRALGAAVETVLAALGAAARGPVPEPVATSALFTSNSAAGVFSAKVLGLHVCGLYGEWVSRTEG
DLGQLVPGGVA

hide sequence

RefSeq Acc Id:	XP_006230283 ⟸ XM_006230221
- Peptide Label:	isoform X6
- UniProtKB:	A0A8L2UK35 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQREGSLDHQTDSSFSFLPHLEAKIRQTHNLARLLTKYADQLLEEYVQQQGEPFGLPGFSPPR LPLAGLSGPAPSHAGLPVSERLRQDAAALSALPALLDAVRRRQAELNPRAPRLLRSLEDAARQV RALGAAVETVLAALGAAARGPVPEPVATSALFTSNSAAGVFSAKVLGLHVCGLYGEWVSRTEGD LGQLVPGGVA hide sequence

RefSeq Acc Id:

ENSRNOP00000025646 ⟸ ENSRNOT00000025646

RefSeq Acc Id:	XP_038959065 ⟸ XM_039103137
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038959060 ⟸ XM_039103132
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000089496 ⟸ ENSRNOT00000103205

RefSeq Acc Id:	XP_063138834 ⟸ XM_063282764
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063138830 ⟸ XM_063282760
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063138831 ⟸ XM_063282761
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063138833 ⟸ XM_063282763
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ABW6 (UniProtKB/TrEMBL), A6I9T7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138832 ⟸ XM_063282762
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63086-F1-model_v2	AlphaFold	Q63086	1-203	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690439

Promoter ID:

EPDNEW_R964

Type:

initiation region

Name:

Ctf1_1

Description:

cardiotrophin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	199,163,109 - 199,163,169	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2442	AgrOrtholog
BioCyc Gene	G2FUF-57344	BioCyc
Ensembl Genes	ENSRNOG00000018962	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025646.3	UniProtKB/TrEMBL
	ENSRNOT00000103205.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7096800	IMAGE-MGC_LOAD
InterPro	4_helix_cytokine-like_core	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Leukemia_IF/oncostatin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PRF/CT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29201	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:91750	IMAGE-MGC_LOAD
NCBI Gene	29201	ENTREZGENE
PANTHER	CARDIOTROPHIN-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR21353	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LIF_OSM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ctf1	PhenoGen
RatGTEx	ENSRNOG00000018962	RatGTEx
Superfamily-SCOP	SSF47266	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC219295
UniProt	A0A8I6ABW6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UK35	ENTREZGENE, UniProtKB/TrEMBL
	A6I9T6	ENTREZGENE, UniProtKB/TrEMBL
	A6I9T7	ENTREZGENE, UniProtKB/TrEMBL
	CTF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Ctf1	cardiotrophin 1			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_pathway	acts via the signal transducer and activator of transcription 3 (STAT3) pathway	727670
gene_process	promotes the outgrowth of embryonic cranial motor neurons	727568
gene_product	member of the interleukin-6 family of cytokines	727670

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - KEGG (archival)