Ctf1 (cardiotrophin 1) - Rat Genome Database

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Gene: Ctf1 (cardiotrophin 1) Heterocephalus glaber
Analyze
Symbol: Ctf1
Name: cardiotrophin 1
RGD ID: 18912900
Description: ENCODES a protein that exhibits cytokine activity (ortholog); leukemia inhibitory factor receptor binding (ortholog); INVOLVED IN leukemia inhibitory factor signaling pathway (ortholog); nervous system development (ortholog); neuron development (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); branched-chain keto acid dehydrogenase kinase deficiency (ortholog); Cardiomegaly (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cardiotrophin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478213,976,308 - 13,979,327 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ctf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478213,976,308 - 13,979,327 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,895,846 - 30,903,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,896,614 - 30,903,547 (+)EnsemblGRCh38hg38GRCh38
GRCh371630,907,935 - 30,914,881 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,815,429 - 30,822,382 (+)NCBINCBI36Build 36hg18NCBI36
Build 341630,815,428 - 30,822,381NCBI
Celera1629,382,737 - 29,389,814 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,470,690 - 28,477,682 (+)NCBIHuRef
CHM1_11632,225,018 - 32,231,972 (+)NCBICHM1_1
T2T-CHM13v2.01631,283,287 - 31,291,024 (+)NCBIT2T-CHM13v2.0
Ctf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,311,872 - 127,317,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,311,908 - 127,317,364 (+)EnsemblGRCm39 Ensembl
GRCm387127,712,676 - 127,718,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,712,736 - 127,718,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,856,250 - 134,861,699 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,503,884 - 127,509,333 (+)NCBIMGSCv36mm8
Celera7127,551,798 - 127,557,251 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.69NCBI
Ctf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,758,512 - 191,771,259 (+)NCBIGRCr8
mRatBN7.21182,328,035 - 182,336,346 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,328,090 - 182,333,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,678,674 - 190,683,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,864,766 - 197,869,976 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,535,271 - 190,540,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,162,319 - 199,168,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,163,086 - 199,168,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,186,511 - 206,191,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,001,445 - 187,006,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,151,325 - 187,156,536 (+)NCBI
Celera1179,979,246 - 179,984,456 (+)NCBICelera
Cytogenetic Map1q37NCBI
Ctf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554937,735,996 - 7,737,559 (+)NCBIChiLan1.0ChiLan1.0
CTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,101,941 - 34,109,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,903,404 - 38,910,508 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,065,866 - 24,072,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,263,009 - 31,269,439 (+)NCBIpanpan1.1PanPan1.1panPan2
CTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,299,561 - 17,303,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,299,561 - 17,303,095 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,874,611 - 18,878,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,427,691 - 17,433,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,406,389 - 17,433,403 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,230,218 - 17,233,760 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,149,372 - 17,152,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,461,913 - 17,465,457 (-)NCBIUU_Cfam_GSD_1.0
Ctf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,188,961 - 125,193,420 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650113,286,821 - 13,291,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,539,941 - 17,544,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,539,927 - 17,545,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,955,024 - 17,960,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231119
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,579,175 - 27,586,779 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,579,987 - 27,585,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,878,594 - 1,886,866 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004856193   ⟹   XP_004856250
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,308 - 13,979,327 (+)NCBI
RefSeq Acc Id: XM_004856194   ⟹   XP_004856251
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,308 - 13,979,327 (+)NCBI
RefSeq Acc Id: XR_001184205
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,313 - 13,978,931 (+)NCBI
RefSeq Acc Id: XR_001184207
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,313 - 13,978,931 (+)NCBI
RefSeq Acc Id: XR_001184208
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,320 - 13,978,931 (+)NCBI
RefSeq Acc Id: XR_002386644
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,313 - 13,978,931 (+)NCBI
RefSeq Acc Id: XR_002386645
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,313 - 13,978,931 (+)NCBI
RefSeq Acc Id: XR_002386646
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478213,976,313 - 13,978,904 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856250 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856251 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004856250   ⟸   XM_004856193
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004856251   ⟸   XM_004856194
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Ctf1 ENTREZGENE