Crem (cAMP responsive element modulator) - Rat Genome Database

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Gene: Crem (cAMP responsive element modulator) Rattus norvegicus
Analyze
Symbol: Crem
Name: cAMP responsive element modulator
RGD ID: 2402
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in fatty acid metabolic process; glucose metabolic process; and retinoic acid receptor signaling pathway. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Biomarker of transient cerebral ischemia. Orthologous to human CREM (cAMP responsive element modulator); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cAMP responsive element moderator; cAMP-responsive element modulator; CRE modulator; CREM delta C-G; CREM-17X; Icer; inducible cyclic AMP early repressor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Candidate Gene For: Memor5
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81758,932,011 - 59,001,160 (+)NCBIGRCr8
mRatBN7.21754,238,889 - 54,305,989 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1754,239,030 - 54,305,989 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1757,405,725 - 57,472,789 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01761,408,762 - 61,475,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01755,566,884 - 55,633,838 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01757,021,704 - 57,090,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1757,031,766 - 57,090,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01755,055,678 - 55,122,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,770,633 - 62,837,670 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11762,793,252 - 62,846,993 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBICelera
RH 3.4 Map17555.2RGD
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(R)-noradrenaline  (ISO)
(S)-amphetamine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
15-acetyldeoxynivalenol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
allethrin  (EXP)
amiodarone  (EXP)
amitriptyline  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
ammonium hexachloroplatinate  (ISO)
amphetamine  (EXP,ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
bathocuproine disulfonic acid  (ISO)
benzbromarone  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
bucladesine  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbofuran  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
clofibrate  (EXP)
clomipramine  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diethylstilbestrol  (EXP,ISO)
dobutamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
eugenol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gallic acid  (ISO)
glafenine  (EXP)
glycidol  (EXP)
hydrogen peroxide  (EXP)
imipramine  (EXP)
inulin  (ISO)
ionomycin  (ISO)
isoprenaline  (EXP)
ketoconazole  (EXP)
L-ethionine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (EXP)
medroxyprogesterone acetate  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP)
methotrexate  (ISO)
milrinone  (EXP)
morphine  (ISO)
N(6)-butyryl-cAMP  (EXP)
N-acetyl-L-cysteine  (EXP)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
omeprazole  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phorone  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
pyrethrins  (EXP)
pyrrolidine dithiocarbamate  (ISO)
ranitidine  (EXP)
reserpine  (EXP)
resveratrol  (EXP)
rotenone  (EXP,ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
sevoflurane  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (EXP)
thiacloprid  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
topotecan  (EXP)
torcetrapib  (ISO)
triadimefon  (EXP)
tributylstannane  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (EXP)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
valsartan  (EXP)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Expression of c-Fos, ICER, Krox-24 and JunB in the whisker-to-barrel pathway of rats: time course of induction upon whisker stimulation by tactile exploration of an enriched environment. Bisler S, etal., J Chem Neuroanat 2002 Mar;23(3):187-98.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. CREB expression in cardiac fibroblasts and CREM expression in ventricular myocytes. Husse B and Isenberg G, Biochem Biophys Res Commun. 2005 Sep 9;334(4):1260-5.
5. Transcriptional repressors are increased in pancreatic islets of type 2 diabetic rats. Inada A, etal., Biochem Biophys Res Commun 1998 Dec 30;253(3):712-8.
6. Inducible cAMP early repressor, an endogenous antagonist of cAMP responsive element-binding protein, evokes neuronal apoptosis in vitro. Jaworski J, etal., J Neurosci 2003 Jun 1;23(11):4519-26.
7. Distribution of transcription factor inducible cyclicAMP early repressor (ICER) in rodent brain and pituitary. Kell CA, etal., J Comp Neurol. 2004 Oct 25;478(4):379-94.
8. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
9. The administration of retinoic acid down-regulates cAMP-responsive element modulator (CREM) mRNA in vitamin A-deficient testes. Matsuda M, etal., Biosci Biotechnol Biochem. 2005 Feb;69(2):261-6.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Heart-directed expression of a human cardiac isoform of cAMP-response element modulator in transgenic mice. Muller FU, etal., J Biol Chem. 2005 Feb 25;280(8):6906-14. Epub 2004 Nov 29.
12. Gene expression analysis of spontaneously hypertensive rat cerebral cortex following transient focal cerebral ischemia. Raghavendra Rao VL, etal., J Neurochem 2002 Dec;83(5):1072-86.
13. GOA pipeline RGD automated data pipeline
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Photoinducible and rhythmic ICER-CREM immunoreactivity in the rat suprachiasmatic nucleus. Schwartz WJ, etal., Neurosci Lett. 2005 Sep 2;385(1):87-91.
16. Lithium-induced gene expression of inducible cyclic adenosine monophosphate early repressor in the rat adrenal gland. Spencer CM, etal., J Neurosci Res. 2005 Oct 15;82(2):273-82.
17. Adrenergic signals direct rhythmic expression of transcriptional repressor CREM in the pineal gland. Stehle JH, etal., Nature 1993 Sep 23;365(6444):314-20.
18. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
19. An isoform of transcription factor CREM expressed during spermatogenesis lacks the phosphorylation domain and represses cAMP-induced transcription. Walker WH, etal., Proc Natl Acad Sci U S A 1994 Dec 20;91(26):12423-7.
20. Overexpression of repressive cAMP response element modulators in high glucose and fatty acid-treated rat islets. A common mechanism for glucose toxicity and lipotoxicity? Zhou YP, etal., J Biol Chem. 2003 Dec 19;278(51):51316-23. Epub 2003 Oct 8.
Additional References at PubMed
PMID:1461747   PMID:8206879   PMID:8889548   PMID:11214319   PMID:11354513   PMID:12198242   PMID:12477932   PMID:12626549   PMID:14585816   PMID:14713288   PMID:14757819   PMID:16186489  
PMID:16269517   PMID:16893891   PMID:16899810   PMID:17185632   PMID:17624719   PMID:17681298   PMID:18073214   PMID:18180303   PMID:18308723   PMID:18922788   PMID:19543827   PMID:20488182  
PMID:20724525   PMID:21547497   PMID:21642009   PMID:22044735   PMID:22267842   PMID:22569987   PMID:23443664   PMID:23613279   PMID:25381014   PMID:25517116   PMID:27234251   PMID:28439100  
PMID:30118718  


Genomics

Comparative Map Data
Crem
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81758,932,011 - 59,001,160 (+)NCBIGRCr8
mRatBN7.21754,238,889 - 54,305,989 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1754,239,030 - 54,305,989 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1757,405,725 - 57,472,789 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01761,408,762 - 61,475,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01755,566,884 - 55,633,838 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01757,021,704 - 57,090,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1757,031,766 - 57,090,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01755,055,678 - 55,122,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,770,633 - 62,837,670 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11762,793,252 - 62,846,993 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBICelera
RH 3.4 Map17555.2RGD
Cytogenetic Map17q12.1NCBI
CREM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381035,126,846 - 35,212,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1035,126,791 - 35,212,958 (+)EnsemblGRCh38hg38GRCh38
GRCh371035,415,774 - 35,501,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361035,455,807 - 35,541,892 (+)NCBINCBI36Build 36hg18NCBI36
Build 341035,456,393 - 35,541,891NCBI
Celera1035,181,137 - 35,267,234 (+)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1035,134,234 - 35,220,214 (+)NCBIHuRef
CHM1_11035,416,939 - 35,502,837 (+)NCBICHM1_1
T2T-CHM13v2.01035,155,414 - 35,241,554 (+)NCBIT2T-CHM13v2.0
Crem
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39183,263,181 - 3,337,688 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl183,266,048 - 3,337,748 (-)EnsemblGRCm39 Ensembl
GRCm38183,266,354 - 3,337,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl183,266,048 - 3,337,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv37183,266,352 - 3,337,587 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36183,266,354 - 3,327,517 (-)NCBIMGSCv36mm8
Celera183,313,578 - 3,387,320 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map182.14NCBI
Crem
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554622,491,504 - 2,536,385 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554622,491,504 - 2,547,587 (-)NCBIChiLan1.0ChiLan1.0
CREM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2847,768,085 - 47,855,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11047,773,547 - 47,861,179 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01035,247,426 - 35,335,545 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11035,824,725 - 35,912,432 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1035,825,218 - 35,912,432 (+)Ensemblpanpan1.1panPan2
CREM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.121,755,189 - 1,828,746 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl21,755,522 - 1,828,910 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha21,843,669 - 1,893,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.022,037,957 - 2,111,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl22,038,372 - 2,101,869 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.121,809,553 - 1,859,860 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.021,853,133 - 1,903,529 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.021,973,934 - 2,024,249 (-)NCBIUU_Cfam_GSD_1.0
Crem
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934413,971,103 - 14,048,763 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365743,479,060 - 3,548,951 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365743,478,969 - 3,546,738 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CREM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1057,829,518 - 57,895,610 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11057,829,523 - 57,895,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21063,437,821 - 63,504,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CREM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl934,418,947 - 34,506,930 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605643,570,059 - 43,655,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crem
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248056,923,557 - 6,992,450 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248056,890,484 - 6,992,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Crem
394 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:859
Count of miRNA genes:279
Interacting mature miRNAs:354
Transcripts:ENSRNOT00000020012, ENSRNOT00000020160, ENSRNOT00000020204, ENSRNOT00000068545, ENSRNOT00000074146
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)175402992960463637Rat

Markers in Region
AI556320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,669 - 54,303,870 (+)MAPPERmRatBN7.2
Rnor_6.01757,088,569 - 57,088,769NCBIRnor6.0
Rnor_5.01755,120,394 - 55,120,594UniSTSRnor5.0
RGSC_v3.41762,836,677 - 62,836,877UniSTSRGSC3.4
Celera1750,283,865 - 50,284,065UniSTS
RH 3.4 Map17555.8UniSTS
Cytogenetic Map17q12.1UniSTS
AA930232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,275,281 - 54,275,360 (+)MAPPERmRatBN7.2
Rnor_6.01757,060,190 - 57,060,268NCBIRnor6.0
Rnor_5.01755,092,157 - 55,092,235UniSTSRnor5.0
RGSC_v3.41762,807,738 - 62,807,816UniSTSRGSC3.4
Celera1750,255,826 - 50,255,904UniSTS
Cytogenetic Map17q12.1UniSTS
RH94613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,016 - 54,303,116 (+)MAPPERmRatBN7.2
Rnor_6.01757,087,916 - 57,088,015NCBIRnor6.0
Rnor_5.01755,119,741 - 55,119,840UniSTSRnor5.0
RGSC_v3.41762,836,024 - 62,836,123UniSTSRGSC3.4
Celera1750,283,212 - 50,283,311UniSTS
RH 3.4 Map17555.2UniSTS
Cytogenetic Map17q12.1UniSTS
RH138536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,304,241 - 54,304,405 (+)MAPPERmRatBN7.2
Rnor_6.01757,089,141 - 57,089,304NCBIRnor6.0
Rnor_5.01755,120,966 - 55,121,129UniSTSRnor5.0
RGSC_v3.41762,837,249 - 62,837,412UniSTSRGSC3.4
Celera1750,284,437 - 50,284,600UniSTS
Cytogenetic Map17q12.1UniSTS
BI275488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,275,686 - 54,275,795 (+)MAPPERmRatBN7.2
Rnor_6.01757,060,595 - 57,060,703NCBIRnor6.0
Rnor_5.01755,092,562 - 55,092,670UniSTSRnor5.0
RGSC_v3.41762,808,143 - 62,808,251UniSTSRGSC3.4
Celera1750,256,231 - 50,256,339UniSTS
RH 3.4 Map17555.7UniSTS
Cytogenetic Map17q12.1UniSTS
UniSTS:224716  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,077 - 54,303,251 (+)MAPPERmRatBN7.2
Rnor_6.01757,087,977 - 57,088,150NCBIRnor6.0
Rnor_5.01755,119,802 - 55,119,975UniSTSRnor5.0
RGSC_v3.41762,836,085 - 62,836,258UniSTSRGSC3.4
Celera1750,283,273 - 50,283,446UniSTS
Cytogenetic Map17q12.1UniSTS
GDB:1318198  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,282,603 - 54,282,663 (+)MAPPERmRatBN7.2
Rnor_6.01757,067,512 - 57,067,571NCBIRnor6.0
Rnor_5.01755,099,479 - 55,099,538UniSTSRnor5.0
RGSC_v3.41762,815,060 - 62,815,119UniSTSRGSC3.4
Celera1750,263,148 - 50,263,207UniSTS
Cytogenetic Map17q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 29 15 6 15 4 36 7
Low 3 43 28 26 13 26 8 11 74 31 5 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB031423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY011644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF564195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ194709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU760387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK595763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO556486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV716765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM033648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM089481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z15158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020012   ⟹   ENSRNOP00000020012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,267,750 - 54,305,989 (+)Ensembl
Rnor_6.0 Ensembl1757,074,525 - 57,090,888 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020160   ⟹   ENSRNOP00000020160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,030 - 54,303,642 (+)Ensembl
Rnor_6.0 Ensembl1757,033,573 - 57,088,378 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020204   ⟹   ENSRNOP00000020204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,040,023 - 57,088,502 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068545   ⟹   ENSRNOP00000062109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,031,766 - 57,088,306 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074146   ⟹   ENSRNOP00000067279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1757,074,570 - 57,088,306 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089536   ⟹   ENSRNOP00000074062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,257,422 - 54,305,989 (+)Ensembl
Rnor_6.0 Ensembl1757,075,218 - 57,090,888 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092187   ⟹   ENSRNOP00000070810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,031,766 - 57,087,910 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096686   ⟹   ENSRNOP00000083169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,257,251 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111611   ⟹   ENSRNOP00000083222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,267,750 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112412   ⟹   ENSRNOP00000089944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,250,771 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115950   ⟹   ENSRNOP00000090155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,250,203 - 54,305,989 (+)Ensembl
RefSeq Acc Id: NM_001110860   ⟹   NP_001104330
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,934,066 - 59,001,160 (+)NCBI
mRatBN7.21754,238,889 - 54,305,989 (+)NCBI
Rnor_6.01757,021,704 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
RGSC_v3.41762,770,633 - 62,837,670 (+)RGD
Celera1750,219,777 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271101   ⟹   NP_001258030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,934,066 - 59,001,160 (+)NCBI
mRatBN7.21754,238,889 - 54,305,989 (+)NCBI
Rnor_6.01757,021,704 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271102   ⟹   NP_001258031
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,797 - 59,001,160 (+)NCBI
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271245   ⟹   NP_001258174
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,797 - 59,001,160 (+)NCBI
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271246   ⟹   NP_001258175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,985,490 - 59,001,160 (+)NCBI
mRatBN7.21754,290,318 - 54,305,989 (+)NCBI
Rnor_6.01757,075,218 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271247   ⟹   NP_001258176
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,985,490 - 59,001,160 (+)NCBI
mRatBN7.21754,290,318 - 54,305,989 (+)NCBI
Rnor_6.01757,075,218 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271248   ⟹   NP_001258177
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,985,490 - 59,001,155 (+)NCBI
mRatBN7.21754,290,318 - 54,305,984 (+)NCBI
Rnor_6.01757,075,218 - 57,090,883 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,179 (+)NCBI
Sequence:
RefSeq Acc Id: NM_017334   ⟹   NP_059030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,797 - 59,001,160 (+)NCBI
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
RGSC_v3.41762,770,633 - 62,837,670 (+)RGD
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254051   ⟹   XP_006254113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,934,242 - 58,999,834 (+)NCBI
mRatBN7.21754,239,053 - 54,304,663 (+)NCBI
Rnor_6.01757,021,819 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254054   ⟹   XP_006254116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,962,899 - 58,999,834 (+)NCBI
mRatBN7.21754,267,523 - 54,305,985 (+)NCBI
Rnor_6.01757,050,365 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254060   ⟹   XP_006254122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,952,429 - 58,999,834 (+)NCBI
mRatBN7.21754,256,969 - 54,305,985 (+)NCBI
Rnor_6.01757,039,643 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254061   ⟹   XP_006254123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,951,963 - 58,999,834 (+)NCBI
mRatBN7.21754,256,966 - 54,305,985 (+)NCBI
Rnor_6.01757,039,644 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254062   ⟹   XP_006254124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,951,963 - 58,999,834 (+)NCBI
mRatBN7.21754,256,846 - 54,305,985 (+)NCBI
Rnor_6.01757,039,644 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254068   ⟹   XP_006254130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,951,963 - 58,999,834 (+)NCBI
mRatBN7.21754,256,856 - 54,305,985 (+)NCBI
Rnor_6.01757,039,645 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254069   ⟹   XP_006254131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,275 - 58,999,834 (+)NCBI
mRatBN7.21754,288,997 - 54,305,985 (+)NCBI
Rnor_6.01757,074,137 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254070   ⟹   XP_006254132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,310 - 58,999,834 (+)NCBI
mRatBN7.21754,289,113 - 54,305,985 (+)NCBI
Rnor_6.01757,073,619 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771691   ⟹   XP_008769913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,750 - 58,999,834 (+)NCBI
mRatBN7.21754,288,910 - 54,305,985 (+)NCBI
Rnor_6.01757,074,136 - 57,090,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771692   ⟹   XP_008769914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,946,051 - 58,999,834 (+)NCBI
mRatBN7.21754,250,786 - 54,305,985 (+)NCBI
Rnor_6.01757,033,579 - 57,090,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095381   ⟹   XP_038951309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,934,245 - 58,999,834 (+)NCBI
mRatBN7.21754,239,053 - 54,304,663 (+)NCBI
RefSeq Acc Id: XM_039095385   ⟹   XP_038951313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,934,229 - 58,999,182 (+)NCBI
mRatBN7.21754,239,067 - 54,305,985 (+)NCBI
RefSeq Acc Id: XM_039095386   ⟹   XP_038951314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,945,979 - 58,999,182 (+)NCBI
mRatBN7.21754,250,777 - 54,305,985 (+)NCBI
RefSeq Acc Id: XM_063276081   ⟹   XP_063132151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,081 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276082   ⟹   XP_063132152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,182 (+)NCBI
RefSeq Acc Id: XM_063276083   ⟹   XP_063132153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276084   ⟹   XP_063132154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,951,963 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276085   ⟹   XP_063132155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276086   ⟹   XP_063132156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276087   ⟹   XP_063132157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,962,896 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276088   ⟹   XP_063132158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,182 (+)NCBI
RefSeq Acc Id: XM_063276089   ⟹   XP_063132159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276090   ⟹   XP_063132160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276091   ⟹   XP_063132161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,182 (+)NCBI
RefSeq Acc Id: XM_063276092   ⟹   XP_063132162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276093   ⟹   XP_063132163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,992,997 (+)NCBI
RefSeq Acc Id: XM_063276094   ⟹   XP_063132164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,962,923 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276095   ⟹   XP_063132165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276096   ⟹   XP_063132166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276097   ⟹   XP_063132167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,962,897 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276098   ⟹   XP_063132168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,182 (+)NCBI
RefSeq Acc Id: XM_063276099   ⟹   XP_063132169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,944,089 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276100   ⟹   XP_063132170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,952,407 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276101   ⟹   XP_063132171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,962,928 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276102   ⟹   XP_063132172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,932,011 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276103   ⟹   XP_063132173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,932,011 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276104   ⟹   XP_063132174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,984,259 - 58,999,834 (+)NCBI
RefSeq Acc Id: XM_063276105   ⟹   XP_063132175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81758,932,011 - 58,999,182 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001104330 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258030 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258031 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258174 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258175 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258176 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258177 (Get FASTA)   NCBI Sequence Viewer  
  NP_059030 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254113 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254116 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254122 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254123 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254124 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254130 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254131 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254132 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769913 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769914 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951309 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951314 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132151 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132152 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132153 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132154 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132155 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132156 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132157 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132158 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132160 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132161 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132162 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132164 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132165 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132166 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132167 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132168 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132169 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132170 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132171 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132172 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132173 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132174 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132175 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA96340 (Get FASTA)   NCBI Sequence Viewer  
  AAB28273 (Get FASTA)   NCBI Sequence Viewer  
  AAG47557 (Get FASTA)   NCBI Sequence Viewer  
  AAH78899 (Get FASTA)   NCBI Sequence Viewer  
  BAA83552 (Get FASTA)   NCBI Sequence Viewer  
  CAA78857 (Get FASTA)   NCBI Sequence Viewer  
  EDL87463 (Get FASTA)   NCBI Sequence Viewer  
  EDL87464 (Get FASTA)   NCBI Sequence Viewer  
  EDL87465 (Get FASTA)   NCBI Sequence Viewer  
  EDL87466 (Get FASTA)   NCBI Sequence Viewer  
  EDL87467 (Get FASTA)   NCBI Sequence Viewer  
  EDL87468 (Get FASTA)   NCBI Sequence Viewer  
  EDL87469 (Get FASTA)   NCBI Sequence Viewer  
  EDL87470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020012
  ENSRNOP00000020012.7
  ENSRNOP00000020160.8
  ENSRNOP00000020204
  ENSRNOP00000020204.6
  ENSRNOP00000062109.3
  ENSRNOP00000070810.2
  ENSRNOP00000074062
  ENSRNOP00000074062.2
  ENSRNOP00000083169
  ENSRNOP00000083169.1
  ENSRNOP00000083222.1
  ENSRNOP00000089944.1
  ENSRNOP00000090155
  ENSRNOP00000090155.1
GenBank Protein Q03061 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_059030   ⟸   NM_017334
- Peptide Label: isoform 2
- UniProtKB: A6K9H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104330   ⟸   NM_001110860
- Peptide Label: isoform 3
- UniProtKB: A0A140TAC1 (UniProtKB/TrEMBL),   A6K9H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258030   ⟸   NM_001271101
- Peptide Label: isoform 4
- UniProtKB: Q6AYV1 (UniProtKB/Swiss-Prot),   Q03061 (UniProtKB/Swiss-Prot),   A0A8I6ACV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258174   ⟸   NM_001271245
- Peptide Label: isoform 6
- UniProtKB: A6K9H5 (UniProtKB/TrEMBL),   Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258031   ⟸   NM_001271102
- Peptide Label: isoform 5
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258176   ⟸   NM_001271247
- Peptide Label: isoform 8
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258175   ⟸   NM_001271246
- Peptide Label: isoform 7
- UniProtKB: A0A0G2K748 (UniProtKB/TrEMBL),   A6K9H6 (UniProtKB/TrEMBL),   Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258177   ⟸   NM_001271248
- Peptide Label: isoform 9
- UniProtKB: A6K9H7 (UniProtKB/TrEMBL),   Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254113   ⟸   XM_006254051
- Peptide Label: isoform X4
- UniProtKB: A6K9H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254122   ⟸   XM_006254060
- Peptide Label: isoform X16
- UniProtKB: D3ZXY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254124   ⟸   XM_006254062
- Peptide Label: isoform X19
- UniProtKB: D3ZXY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254123   ⟸   XM_006254061
- Peptide Label: isoform X17
- UniProtKB: A0A8I5ZW07 (UniProtKB/TrEMBL),   D3ZXY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254130   ⟸   XM_006254068
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: XP_006254116   ⟸   XM_006254054
- Peptide Label: isoform X8
- UniProtKB: A6K9H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254132   ⟸   XM_006254070
- Peptide Label: isoform X34
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254131   ⟸   XM_006254069
- Peptide Label: isoform X31
- UniProtKB: A6K9H4 (UniProtKB/TrEMBL),   Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769914   ⟸   XM_008771692
- Peptide Label: isoform X35
- UniProtKB: A0A0G2K748 (UniProtKB/TrEMBL),   A6K9H6 (UniProtKB/TrEMBL),   Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769913   ⟸   XM_008771691
- Peptide Label: isoform X32
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070810   ⟸   ENSRNOT00000092187
RefSeq Acc Id: ENSRNOP00000074062   ⟸   ENSRNOT00000089536
RefSeq Acc Id: ENSRNOP00000062109   ⟸   ENSRNOT00000068545
RefSeq Acc Id: ENSRNOP00000020204   ⟸   ENSRNOT00000020204
RefSeq Acc Id: ENSRNOP00000020012   ⟸   ENSRNOT00000020012
RefSeq Acc Id: ENSRNOP00000020160   ⟸   ENSRNOT00000020160
RefSeq Acc Id: ENSRNOP00000067279   ⟸   ENSRNOT00000074146
RefSeq Acc Id: XP_038951309   ⟸   XM_039095381
- Peptide Label: isoform X13
- UniProtKB: A6K9H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951313   ⟸   XM_039095385
- Peptide Label: isoform X36
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951314   ⟸   XM_039095386
- Peptide Label: isoform X36
- UniProtKB: Q9R1Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089944   ⟸   ENSRNOT00000112412
RefSeq Acc Id: ENSRNOP00000083169   ⟸   ENSRNOT00000096686
RefSeq Acc Id: ENSRNOP00000083222   ⟸   ENSRNOT00000111611
RefSeq Acc Id: ENSRNOP00000090155   ⟸   ENSRNOT00000115950
RefSeq Acc Id: XP_063132172   ⟸   XM_063276102
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063132173   ⟸   XM_063276103
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063132175   ⟸   XM_063276105
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063132151   ⟸   XM_063276081
- Peptide Label: isoform X1
- UniProtKB: A0A140TAC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132153   ⟸   XM_063276083
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132160   ⟸   XM_063276090
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JYV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132162   ⟸   XM_063276092
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063132155   ⟸   XM_063276085
- Peptide Label: isoform X6
- UniProtKB: A0A8L2QUF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132156   ⟸   XM_063276086
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063132159   ⟸   XM_063276089
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063132165   ⟸   XM_063276095
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063132166   ⟸   XM_063276096
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063132169   ⟸   XM_063276099
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063132152   ⟸   XM_063276082
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132161   ⟸   XM_063276091
- Peptide Label: isoform X14
- UniProtKB: A0A140TAC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132158   ⟸   XM_063276088
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063132168   ⟸   XM_063276098
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063132163   ⟸   XM_063276093
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063132154   ⟸   XM_063276084
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132170   ⟸   XM_063276100
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063132157   ⟸   XM_063276087
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063132167   ⟸   XM_063276097
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063132164   ⟸   XM_063276094
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063132171   ⟸   XM_063276101
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063132174   ⟸   XM_063276104
- Peptide Label: isoform X31
- UniProtKB: A6K9H4 (UniProtKB/TrEMBL)
Protein Domains
bZIP   KID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q03061-F1-model_v2 AlphaFold Q03061 1-357 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700530
Promoter ID:EPDNEW_R11053
Type:initiation region
Name:Crem_1
Description:cAMP responsive element modulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11054  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01757,074,526 - 57,074,586EPDNEW
RGD ID:13700531
Promoter ID:EPDNEW_R11054
Type:initiation region
Name:Crem_2
Description:cAMP responsive element modulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11053  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01757,075,291 - 57,075,351EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2402 AgrOrtholog
BioCyc Gene G2FUF-8984 BioCyc
Ensembl Genes ENSRNOG00000014900 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020012.7 UniProtKB/TrEMBL
  ENSRNOT00000020160.9 UniProtKB/TrEMBL
  ENSRNOT00000020204 ENTREZGENE
  ENSRNOT00000020204.7 UniProtKB/TrEMBL
  ENSRNOT00000068545.4 UniProtKB/TrEMBL
  ENSRNOT00000089536 UniProtKB/TrEMBL
  ENSRNOT00000089536.2 UniProtKB/Swiss-Prot
  ENSRNOT00000092187.2 UniProtKB/TrEMBL
  ENSRNOT00000096686.1 UniProtKB/TrEMBL
  ENSRNOT00000111611.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112412.1 UniProtKB/TrEMBL
  ENSRNOT00000115950 ENTREZGENE
  ENSRNOT00000115950.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133070 IMAGE-MGC_LOAD
InterPro bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bZIP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coactivator_CBP_pKID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leuzip_CREB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93635 IMAGE-MGC_LOAD
NCBI Gene 25620 ENTREZGENE
PANTHER CAMP-RESPONSIVE ELEMENT MODULATOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  pKID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crem PhenoGen
PRINTS LEUZIPPRCREB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014900 RatGTEx
SMART BRLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC202440
UniProt A0A0G2JYV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K748 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZW07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AD35_RAT UniProtKB/TrEMBL
  A0A8L2QUF6 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H0 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H1_RAT UniProtKB/TrEMBL
  A6K9H2_RAT UniProtKB/TrEMBL
  A6K9H3 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H4 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H5 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H6 ENTREZGENE, UniProtKB/TrEMBL
  A6K9H7 ENTREZGENE, UniProtKB/TrEMBL
  CREM_RAT UniProtKB/Swiss-Prot
  D3ZXY8 ENTREZGENE, UniProtKB/TrEMBL
  Q03061 ENTREZGENE
  Q62613_RAT UniProtKB/TrEMBL
  Q6AYV1 ENTREZGENE
  Q99NS8_RAT UniProtKB/TrEMBL
  Q9R1Q5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q6AYV1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Crem  cAMP responsive element modulator    CAMP responsive element modulator  Name updated 625702 APPROVED
2002-06-10 Crem  CAMP responsive element modulator      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_disease increased expression of alternatively spliced isoform CREM-17X in pancreatic islet cells may contribute to impaired insulin secretion in type 2 diabetes 1298797
gene_function transcription factor for cAMP signaling pathway 729308
gene_process regulates transcription of cAMP-responsive genes 1298796
gene_process alternatively spliced CREM delta C-G isoform may regulate transcription during spermatogenesis 1298796
gene_process may be involved in neuronal adaptive plasticity 729308
gene_process alternatively spliced isoform CREM-17X represses insulin gene transcription 1298797
gene_process alternatively spliced isoform Icer represses cAMP-induced gene transcription along the hypothalamic-pituitary-gonadal axis 1298798
gene_process may repress transcription of anti-apoptotic genes to contribute to apoptosis in neurons 1298799
gene_transcript alternatively spliced form CREM delta C-G lacking four exons found in male germ cells 1298796
gene_transcript alternatively spliced isoform CREM-17X found in pancreatic islet cells 1298797
gene_transcript alternatively spliced isoform Icer results from use of alternative intronic promoter 1298798