Speg (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 84,314,387 - 84,371,816 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 76,865,714 - 76,923,170 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 76,865,754 - 76,923,144 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 85,310,241 - 85,367,619 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 90,439,123 - 90,496,499 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 88,825,304 - 88,882,675 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 82,571,333 - 82,628,684 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 82,571,269 - 82,628,709 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 82,340,581 - 82,397,945 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 74,652,526 - 74,709,904 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 9 | 74,824,554 - 74,828,988 (+) | NCBI | | | | | Celera | 9 | 74,435,692 - 74,492,957 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q33 | NCBI | | | | |
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SPEG (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 219,434,843 - 219,493,629 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 219,434,843 - 219,493,629 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 220,299,565 - 220,358,351 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 220,007,944 - 220,066,598 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 2 | 220,133,900 - 220,157,088 | NCBI | | | | | Celera | 2 | 214,069,692 - 214,128,346 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q35 | NCBI | | | | | HuRef | 2 | 212,152,724 - 212,211,419 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 220,305,523 - 220,364,193 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 219,919,623 - 219,978,369 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Speg (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 75,351,931 - 75,408,964 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 75,351,941 - 75,408,964 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 75,375,297 - 75,432,320 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 75,375,297 - 75,432,320 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 75,371,872 - 75,428,889 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 75,258,445 - 75,315,462 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 75,865,860 - 75,923,244 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | C4 | NCBI | | | | | cM Map | 1 | 38.88 | NCBI | | | | |
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Speg (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955453 | 13,976,674 - 14,033,252 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955453 | 13,979,080 - 14,033,718 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SPEG (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 122,065,106 - 122,123,484 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 122,080,072 - 122,138,450 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 106,692,222 - 106,750,922 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 225,282,554 - 225,340,753 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 225,282,676 - 225,339,910 (+) | Ensembl | panpan1.1 | | panPan2 | |
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SPEG (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 37 | 25,947,605 - 26,005,601 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 37 | 25,947,773 - 26,005,601 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 37 | 26,773,599 - 26,831,117 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 37 | 25,963,015 - 26,020,671 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 37 | 25,963,015 - 26,020,671 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 37 | 25,866,874 - 25,924,631 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 37 | 25,802,876 - 25,860,720 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 37 | 25,823,459 - 25,881,304 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Speg (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405303 | 175,484,247 - 175,534,225 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936569 | 1,821,143 - 1,876,156 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936569 | 1,821,125 - 1,877,006 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SPEG (Sus scrofa - pig) |
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SPEG (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 10 | 105,330,171 - 105,388,657 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 105,330,171 - 105,387,810 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 94,012,325 - 94,070,649 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Speg (Heterocephalus glaber - naked mole-rat) |
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