Myl1 (myosin, light chain 1) - Rat Genome Database

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Gene: Myl1 (myosin, light chain 1) Rattus norvegicus
Analyze
Symbol: Myl1 (Ensembl: Myl1_v1)
Name: myosin, light chain 1 (Ensembl:myosin, light chain 1, variant 1)
RGD ID: 1598796
Description: Predicted to be a structural constituent of muscle. Involved in cardiac muscle contraction. Located in contractile muscle fiber. Human ortholog(s) of this gene implicated in congenital myopathy 14. Orthologous to human MYL1 (myosin light chain 1); INTERACTS WITH (R)-noradrenaline; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alkali myosin light chain 1; alkali myosin light chain 3; fast myosin alkali light chain 1; fast myosin alkali light chain 3; Mcl3; MLC-f; Mlc1; MLC1/MLC3; MLC1F; MLC1F/MLC3F; Mlc3; MLC3-f; MLC3F; MLCf; myosin light chain 1, skeletal muscle isoform; myosin light chain 1/3, skeletal muscle isoform; myosin light chain 3, skeletal muscle isoform; myosin light chain A1/A2; myosin light chain alkali 1/2; myosin, light polypeptide 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Myl1_v1 ; Myl1_v2
Candidate Gene For: Vetf6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8 Ensembl975,887,227 - 75,907,971 (-)EnsemblGRCr8
mRatBN7.2968,437,514 - 68,458,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,437,517 - 68,458,261 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx976,926,694 - 76,947,188 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0982,055,627 - 82,076,116 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,461,970 - 80,482,459 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,937,820 - 73,958,480 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,937,823 - 73,958,480 (-)Ensemblrn6Rnor6.0
Rnor_5.0973,349,226 - 73,369,886 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4965,717,097 - 65,737,576 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera965,916,653 - 65,937,125 (-)NCBICelera
Cytogenetic Map9q32NCBI



Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
capsaicin  (EXP)
carbofuran  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chelerythrine  (EXP)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
clozapine  (ISO)
deguelin  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
diuron  (EXP)
doxorubicin  (EXP)
fasudil  (EXP)
fenthion  (ISO)
folic acid  (ISO)
graphite  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
methanol  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
milrinone  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel subsulfide  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (ISO)
phenobarbital  (ISO)
phenylephrine  (EXP)
pioglitazone  (ISO)
progesterone  (EXP)
razoxane  (EXP)
resveratrol  (EXP)
scoparone  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
spermine  (ISO)
tamoxifen  (ISO)
Tanshinone I  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triticonazole  (EXP)
valproic acid  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of cDNA sequences corresponding to myosin light chains 1, 2, and 3, troponin-C, troponin-T, alpha-tropomyosin, and alpha-actin. Garfinkel LI, etal., J Biol Chem 1982 Sep 25;257(18):11078-86.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Fast skeletal muscle myosin light chains 1 and 3 are produced from a single gene by a combined process of differential RNA transcription and splicing. Periasamy M, etal., J Biol Chem 1984 Nov 10;259(21):13595-604.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Mechanism of action of endothelin in rat cardiac muscle: cross-bridge kinetics and myosin light chain phosphorylation. Rossmanith GH, etal., J Physiol. 1997 Nov 15;505 ( Pt 1):217-27.
7. Myosin light-chain 1 and 3 gene has two structurally distinct and differentially regulated promoters evolving at different rates. Strehler EE, etal., Mol Cell Biol 1985 Nov;5(11):3168-82.
Additional References at PubMed
PMID:620885   PMID:8145163   PMID:8889548   PMID:11596118   PMID:16160062   PMID:17494635   PMID:19182904   PMID:20518849   PMID:22871113   PMID:23899007   PMID:29476059   PMID:30215711  
PMID:30964931  


Genomics

Comparative Map Data
Myl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8 Ensembl975,887,227 - 75,907,971 (-)EnsemblGRCr8
mRatBN7.2968,437,514 - 68,458,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,437,517 - 68,458,261 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx976,926,694 - 76,947,188 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0982,055,627 - 82,076,116 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,461,970 - 80,482,459 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,937,820 - 73,958,480 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,937,823 - 73,958,480 (-)Ensemblrn6Rnor6.0
Rnor_5.0973,349,226 - 73,369,886 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4965,717,097 - 65,737,576 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera965,916,653 - 65,937,125 (-)NCBICelera
Cytogenetic Map9q32NCBI
MYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382210,290,150 - 210,315,174 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2210,290,150 - 210,315,174 (-)Ensemblhg38GRCh38
GRCh372211,154,874 - 211,179,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,863,113 - 210,888,140 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342210,980,382 - 210,993,845NCBI
Celera2204,922,877 - 204,947,923 (-)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2203,000,114 - 203,025,138 (-)NCBIHuRef
CHM1_12211,160,958 - 211,186,022 (-)NCBICHM1_1
T2T-CHM13v2.02210,770,853 - 210,795,901 (-)NCBIT2T-CHM13v2.0
Myl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,963,454 - 66,987,091 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,963,454 - 66,984,563 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38166,924,295 - 66,947,932 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,924,295 - 66,945,404 (-)Ensemblmm10GRCm38
MGSCv37166,970,869 - 66,991,630 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36166,857,506 - 66,878,240 (-)NCBIMGSCv36mm8
Celera167,442,110 - 67,462,688 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.71NCBI
Myl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,146,633 - 5,168,356 (+)Ensembl
ChiLan1.0NW_0049554575,147,443 - 5,167,587 (+)NCBIChiLan1.0ChiLan1.0
MYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,913,613 - 112,938,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,928,593 - 112,953,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B97,548,013 - 97,573,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,940,808 - 215,974,852 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,950,087 - 215,974,852 (-)EnsemblpanPan2panpan1.1
MYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13718,143,644 - 18,168,208 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3718,143,673 - 18,168,187 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3719,024,436 - 19,048,975 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03718,081,858 - 18,106,400 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3718,050,944 - 18,106,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13718,034,367 - 18,058,915 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,996,703 - 18,021,269 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03718,011,588 - 18,036,161 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Myl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,612,434 - 166,632,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365865,993,098 - 6,013,994 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365865,993,177 - 6,013,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15113,036,228 - 113,063,321 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115113,038,083 - 113,051,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,861,888 - 124,875,123 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap15q23-q26NCBI
MYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11096,015,186 - 96,041,862 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1096,015,034 - 96,029,160 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040103,314,602 - 103,340,346 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247655,883,524 - 5,904,179 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247655,883,908 - 5,903,759 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Myl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14139,919,487 - 139,938,935 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:118
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000017838, ENSRNOT00000018097
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH129698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,437,563 - 68,437,752 (+)MAPPERmRatBN7.2
Rnor_6.0973,937,870 - 73,938,058NCBIRnor6.0
Rnor_5.0973,369,648 - 73,369,836UniSTSRnor5.0
RGSC_v3.4965,717,147 - 65,717,335UniSTSRGSC3.4
Celera965,916,703 - 65,916,891UniSTS
RH 3.4 Map9615.2UniSTS
Cytogenetic Map9q32UniSTS
BI277557  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,437,610 - 68,437,764 (+)MAPPERmRatBN7.2
Rnor_6.0973,937,917 - 73,938,070NCBIRnor6.0
Rnor_5.0973,369,636 - 73,369,789UniSTSRnor5.0
RGSC_v3.4965,717,194 - 65,717,347UniSTSRGSC3.4
Celera965,916,750 - 65,916,903UniSTS
RH 3.4 Map9613.0UniSTS
Cytogenetic Map9q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
10 12 67 87 63 61 32 27 32 6 231 127 11 64 54 75 29

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH002203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI277595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB809837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR755322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR756356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017838   ⟹   ENSRNOP00000017838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,887,234 - 75,907,971 (-)Ensembl
mRatBN7.2 Ensembl968,437,524 - 68,458,261 (-)Ensembl
Rnor_6.0 Ensembl973,937,823 - 73,958,480 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000018097   ⟹   ENSRNOP00000018097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,887,227 - 75,907,774 (-)Ensembl
mRatBN7.2 Ensembl968,437,517 - 68,448,114 (-)Ensembl
Rnor_6.0 Ensembl973,937,823 - 73,948,583 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112334   ⟹   ENSRNOP00000086625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,887,227 - 75,898,068 (-)Ensembl
mRatBN7.2 Ensembl968,437,524 - 68,448,107 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119402   ⟹   ENSRNOP00000097175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl975,887,227 - 75,897,817 (-)Ensembl
mRatBN7.2 Ensembl968,437,517 - 68,448,107 (-)Ensembl
RefSeq Acc Id: NM_001077656   ⟹   NP_001071124
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,457,986 (-)NCBI
Rnor_6.0973,937,820 - 73,958,480 (-)NCBI
Rnor_5.0973,349,226 - 73,369,886 (+)NCBI
RGSC_v3.4965,717,097 - 65,737,576 (-)RGD
Celera965,916,653 - 65,937,125 (-)RGD
Sequence:
RefSeq Acc Id: NM_020104   ⟹   NP_064489
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,448,089 (-)NCBI
Rnor_6.0973,937,820 - 73,948,583 (-)NCBI
Rnor_5.0973,349,226 - 73,369,886 (+)NCBI
RGSC_v3.4965,717,097 - 65,737,576 (-)RGD
Celera965,916,653 - 65,927,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767294   ⟹   XP_008765516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,448,259 (-)NCBI
Rnor_6.0973,937,820 - 73,948,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767295   ⟹   XP_008765517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,448,107 (-)NCBI
Rnor_6.0973,937,820 - 73,948,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084140   ⟹   XP_038940068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,448,259 (-)NCBI
RefSeq Acc Id: XM_039084141   ⟹   XP_038940069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,530 - 68,448,163 (-)NCBI
RefSeq Acc Id: XM_039084142   ⟹   XP_038940070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,437,514 - 68,458,256 (-)NCBI
RefSeq Acc Id: NP_064489   ⟸   NM_020104
- Peptide Label: isoform 3f
- UniProtKB: A6KFD9 (UniProtKB/TrEMBL),   A0A8I6A453 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001071124   ⟸   NM_001077656
- Peptide Label: isoform 1f
- UniProtKB: P02601 (UniProtKB/Swiss-Prot),   P02600 (UniProtKB/Swiss-Prot),   A6KFD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765516   ⟸   XM_008767294
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008765517   ⟸   XM_008767295
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000018097   ⟸   ENSRNOT00000018097
Ensembl Acc Id: ENSRNOP00000017838   ⟸   ENSRNOT00000017838
RefSeq Acc Id: XP_038940070   ⟸   XM_039084142
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A453 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940068   ⟸   XM_039084140
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940069   ⟸   XM_039084141
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A453 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086625   ⟸   ENSRNOT00000112334
Ensembl Acc Id: ENSRNOP00000097175   ⟸   ENSRNOT00000119402
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P02600-F1-model_v2 AlphaFold P02600 1-189 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696725
Promoter ID:EPDNEW_R7250
Type:multiple initiation site
Name:Myl1_1
Description:myosin, light chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7251  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,948,601 - 73,948,661EPDNEW
RGD ID:13696726
Promoter ID:EPDNEW_R7251
Type:initiation region
Name:Myl1_2
Description:myosin, light chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7250  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,958,485 - 73,958,545EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598796 AgrOrtholog
BioCyc Gene G2FUF-27284 BioCyc
Ensembl Genes ENSRNOG00000013262 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017838 ENTREZGENE
  ENSRNOT00000017838.7 UniProtKB/Swiss-Prot
  ENSRNOT00000018097 ENTREZGENE
  ENSRNOT00000112334 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
InterPro Ca-Reg_Muscle_Contr_Cell_Proc UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
KEGG Report rno:56781 UniProtKB/Swiss-Prot
NCBI Gene 56781 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/Swiss-Prot
  MYOSIN LIGHT CHAIN 1/3, SKELETAL MUSCLE ISOFORM UniProtKB/Swiss-Prot
PhenoGen Myl1 PhenoGen
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013262 RatGTEx
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt A0A8I6A453 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARB8_RAT UniProtKB/TrEMBL
  A6KFD8 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD9 ENTREZGENE, UniProtKB/TrEMBL
  MYL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  P02601 ENTREZGENE
UniProt Secondary P02601 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-01-13 Myl1  myosin, light chain 1  Myl1  myosin, light polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED