Ppp1r13l (protein phosphatase 1, regulatory subunit 13 like) - Rat Genome Database

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Gene: Ppp1r13l (protein phosphatase 1, regulatory subunit 13 like) Rattus norvegicus
Analyze
Symbol: Ppp1r13l
Name: protein phosphatase 1, regulatory subunit 13 like
RGD ID: 1593681
Description: Predicted to enable identical protein binding activity. Involved in positive regulation of cell differentiation. Predicted to be located in cell junction; cytosol; and intercellular bridge. Orthologous to human PPP1R13L (protein phosphatase 1 regulatory subunit 13 like); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC686781; relA-associated inhibitor; similar to NFkB interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,139,000 - 88,158,714 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,140,532 - 88,158,714 (+)EnsemblGRCr8
mRatBN7.2179,010,997 - 79,030,714 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd186,760,486 - 86,778,667 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive191,897,495 - 91,915,677 (+)NCBILyon_Normotensive
Lyon_Hypertensive188,440,213 - 88,458,217 (+)NCBILyon_Hypertensive
F344_StmMcwi186,886,441 - 86,904,622 (+)NCBIF344_StmMcwi
Rnor_6.0180,271,288 - 80,290,946 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)Ensemblrn6Rnor6.0
Rnor_5.0181,537,577 - 81,557,255 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4178,727,071 - 78,896,831 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera173,473,041 - 73,492,645 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aconitine  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
daunorubicin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
etoposide  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
methylparaben  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transcriptional regulation by p53. Beckerman R and Prives C, Cold Spring Harb Perspect Biol. 2010 Aug;2(8):a000935. doi: 10.1101/cshperspect.a000935. Epub 2010 Apr 28.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Involvement of RelA-associated inhibitor in regulation of trophoblast differentiation via interaction with transcriptional factor specificity protein-1. Minekawa R, etal., Endocrinology. 2007 Dec;148(12):5803-10. Epub 2007 Sep 13.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15661756   PMID:18275817   PMID:23623661   PMID:25468996  


Genomics

Comparative Map Data
Ppp1r13l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,139,000 - 88,158,714 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,140,532 - 88,158,714 (+)EnsemblGRCr8
mRatBN7.2179,010,997 - 79,030,714 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd186,760,486 - 86,778,667 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive191,897,495 - 91,915,677 (+)NCBILyon_Normotensive
Lyon_Hypertensive188,440,213 - 88,458,217 (+)NCBILyon_Hypertensive
F344_StmMcwi186,886,441 - 86,904,622 (+)NCBIF344_StmMcwi
Rnor_6.0180,271,288 - 80,290,946 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)Ensemblrn6Rnor6.0
Rnor_5.0181,537,577 - 81,557,255 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4178,727,071 - 78,896,831 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera173,473,041 - 73,492,645 (+)NCBICelera
Cytogenetic Map1q21NCBI
PPP1R13L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,379,638 - 45,406,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,379,634 - 45,406,349 (-)Ensemblhg38GRCh38
GRCh371945,882,896 - 45,909,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,574,736 - 50,600,129 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341950,574,735 - 50,588,265NCBI
Celera1942,688,993 - 42,715,713 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,315,788 - 42,339,935 (-)NCBIHuRef
CHM1_11945,886,191 - 45,912,899 (-)NCBICHM1_1
T2T-CHM13v2.01948,206,875 - 48,234,343 (-)NCBIT2T-CHM13v2.0
Ppp1r13l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,093,639 - 19,112,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,093,674 - 19,112,458 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38719,359,724 - 19,378,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,359,749 - 19,378,533 (+)Ensemblmm10GRCm38
MGSCv37719,946,565 - 19,963,882 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36718,519,768 - 18,536,530 (+)NCBIMGSCv36mm8
Celera716,767,970 - 16,785,307 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.62NCBI
Ppp1r13l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,372,259 - 2,389,626 (-)Ensembl
ChiLan1.0NW_0049555552,373,088 - 2,390,973 (-)NCBIChiLan1.0ChiLan1.0
PPP1R13L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,540,765 - 51,567,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,408,236 - 53,438,745 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,328,814 - 42,355,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,915,901 - 50,950,837 (-)NCBIPanPan1.1PanPan1.1panPan2
PPP1R13L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,149,393 - 110,166,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,156,749 - 110,165,915 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1109,633,886 - 109,650,563 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01110,682,231 - 110,698,908 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,682,994 - 110,698,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,357,858 - 110,374,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,992,017 - 110,008,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,861,328 - 110,878,230 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp1r13l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,488,020 - 17,504,030 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,837,001 - 1,846,494 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,835,306 - 1,846,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R13L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,763,227 - 51,781,058 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1651,763,214 - 51,779,902 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP1R13L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,828,564 - 38,853,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,432,658 - 18,457,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r13l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,269,815 - 2,286,184 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249072,269,341 - 2,285,909 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp1r13l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12171,241,108 - 171,261,481 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppp1r13l
74 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:62
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000047105
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
D1Rat177  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8188,182,640 - 88,182,834 (+)Marker Load Pipeline
mRatBN7.2179,054,642 - 79,054,836 (+)MAPPERmRatBN7.2
Rnor_6.0180,314,765 - 80,314,958NCBIRnor6.0
Rnor_5.0181,581,037 - 81,581,230UniSTSRnor5.0
RGSC_v3.4178,755,355 - 78,755,548UniSTSRGSC3.4
RGSC_v3.4178,755,354 - 78,755,548RGDRGSC3.4
Celera173,516,569 - 73,516,762UniSTS
RGSC_v3.1178,833,466 - 78,833,659RGD
RH 3.4 Map1787.8RGD
RH 3.4 Map1787.8UniSTS
SHRSP x BN Map140.2499RGD
SHRSP x BN Map140.2499UniSTS
Cytogenetic Map1q21UniSTS
D1Got80  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,161,513 - 79,161,692 (+)MAPPERmRatBN7.2
Rnor_6.0180,420,441 - 80,420,619NCBIRnor6.0
Rnor_5.0181,686,462 - 81,686,640UniSTSRnor5.0
RGSC_v3.4178,865,133 - 78,865,311RGDRGSC3.4
RGSC_v3.4178,865,134 - 78,865,312UniSTSRGSC3.4
Celera173,621,099 - 73,621,277UniSTS
RGSC_v3.1178,943,244 - 78,943,422RGD
RH 3.4 Map1787.4UniSTS
RH 3.4 Map1787.4RGD
RH 2.0 Map1498.9RGD
Cytogenetic Map1q21UniSTS
D1Got81  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,110,512 - 79,110,777 (+)MAPPERmRatBN7.2
Rnor_6.0180,369,283 - 80,369,547NCBIRnor6.0
Rnor_5.0181,635,555 - 81,635,819UniSTSRnor5.0
RGSC_v3.4178,811,154 - 78,811,419RGDRGSC3.4
RGSC_v3.4178,811,155 - 78,811,419UniSTSRGSC3.4
Celera173,570,104 - 73,570,368UniSTS
RGSC_v3.1178,889,265 - 78,889,530RGD
RH 2.0 Map1512.9RGD
BF400777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,171,901 - 79,172,016 (+)MAPPERmRatBN7.2
Rnor_6.0180,430,829 - 80,430,943NCBIRnor6.0
Rnor_5.0181,696,850 - 81,696,964UniSTSRnor5.0
RGSC_v3.4178,875,522 - 78,875,636UniSTSRGSC3.4
Celera173,631,485 - 73,631,599UniSTS
RH 3.4 Map4593.9UniSTS
Cytogenetic Map1q21UniSTS
PMC125755P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,064,827 - 79,065,021 (+)MAPPERmRatBN7.2
Rnor_6.0180,324,950 - 80,325,143NCBIRnor6.0
Rnor_5.0181,591,222 - 81,591,415UniSTSRnor5.0
RGSC_v3.4178,765,540 - 78,765,733UniSTSRGSC3.4
Celera173,526,734 - 73,526,927UniSTS
Cytogenetic Map1q21UniSTS
RH129012  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,143,977 - 79,144,158 (+)MAPPERmRatBN7.2
Rnor_6.0180,402,894 - 80,403,074NCBIRnor6.0
Rnor_5.0181,669,051 - 81,669,231UniSTSRnor5.0
RGSC_v3.4178,846,861 - 78,847,041UniSTSRGSC3.4
Celera173,603,657 - 73,603,837UniSTS
RH 3.4 Map1819.1UniSTS
RH134037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,030,471 - 79,030,658 (+)MAPPERmRatBN7.2
Rnor_6.0180,290,704 - 80,290,890NCBIRnor6.0
Rnor_5.0181,557,013 - 81,557,199UniSTSRnor5.0
RGSC_v3.4178,896,589 - 78,896,775UniSTSRGSC3.4
Celera173,492,403 - 73,492,589UniSTS
RH142672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,156,035 - 79,156,157 (+)MAPPERmRatBN7.2
Rnor_6.0180,414,963 - 80,415,084NCBIRnor6.0
Rnor_5.0181,680,984 - 81,681,105UniSTSRnor5.0
RGSC_v3.4178,859,656 - 78,859,777UniSTSRGSC3.4
Celera173,615,621 - 73,615,742UniSTS
RH 3.4 Map1818.2UniSTS
Cytogenetic Map1q21UniSTS
RH144210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,024,294 - 79,024,413 (+)MAPPERmRatBN7.2
Rnor_6.0180,284,529 - 80,284,647NCBIRnor6.0
Rnor_5.0181,550,838 - 81,550,956UniSTSRnor5.0
RGSC_v3.4178,890,413 - 78,890,531UniSTSRGSC3.4
Celera173,486,255 - 73,486,373UniSTS
RH 3.4 Map1819.5UniSTS
D1Bda2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,431 - 79,071,698 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,552 - 80,331,818NCBIRnor6.0
Rnor_5.0181,597,824 - 81,598,090UniSTSRnor5.0
RGSC_v3.4178,772,393 - 78,772,659UniSTSRGSC3.4
Celera173,533,692 - 73,533,958UniSTS
Cytogenetic Map1q21UniSTS
BE107128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,180,875 - 79,181,012 (-)MAPPERmRatBN7.2
mRatBN7.2179,180,875 - 79,181,012 (+)MAPPERmRatBN7.2
mRatBN7.2149,826,424 - 49,826,561 (-)MAPPERmRatBN7.2
mRatBN7.2149,826,424 - 49,826,561 (+)MAPPERmRatBN7.2
Rnor_6.0150,014,365 - 50,014,501NCBIRnor6.0
Rnor_6.0180,439,800 - 80,439,936NCBIRnor6.0
Rnor_5.0149,739,855 - 49,739,991UniSTSRnor5.0
Rnor_5.0181,705,821 - 81,705,957UniSTSRnor5.0
RGSC_v3.4178,884,493 - 78,884,629UniSTSRGSC3.4
RGSC_v3.4144,315,802 - 44,315,938UniSTSRGSC3.4
Celera145,610,880 - 45,611,016UniSTS
Celera173,640,456 - 73,640,592UniSTS
RH 3.4 Map1589.6UniSTS
Cytogenetic Map1q11UniSTS
Cytogenetic Map1q21UniSTS
RH94390  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,612 - 79,071,710 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,733 - 80,331,830NCBIRnor6.0
Rnor_5.0181,598,005 - 81,598,102UniSTSRnor5.0
RGSC_v3.4178,772,574 - 78,772,671UniSTSRGSC3.4
Celera173,533,873 - 73,533,970UniSTS
RH 3.4 Map1787.5UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map1q21UniSTS
RH138712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,461 - 79,071,600 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,582 - 80,331,720NCBIRnor6.0
Rnor_5.0181,597,854 - 81,597,992UniSTSRnor5.0
RGSC_v3.4178,772,423 - 78,772,561UniSTSRGSC3.4
Celera173,533,722 - 73,533,860UniSTS
RH 3.4 Map1819.7UniSTS
Cytogenetic Map1q21UniSTS
RH138979  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,124,440 - 79,124,637 (+)MAPPERmRatBN7.2
Rnor_6.0180,383,214 - 80,383,410NCBIRnor6.0
Rnor_5.0181,649,371 - 81,649,567UniSTSRnor5.0
RGSC_v3.4178,826,000 - 78,826,196UniSTSRGSC3.4
Celera173,584,120 - 73,584,316UniSTS
RH 3.4 Map1820.2UniSTS
Ckmm  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,064,837 - 79,066,141 (+)MAPPERmRatBN7.2
Rnor_6.0180,324,960 - 80,326,263NCBIRnor6.0
Rnor_5.0181,591,232 - 81,592,535UniSTSRnor5.0
RGSC_v3.4178,765,550 - 78,766,853UniSTSRGSC3.4
Celera173,526,744 - 73,528,047UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 90 89 58 84 58 6 347 184 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000047105   ⟹   ENSRNOP00000050977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,141,392 - 88,158,714 (+)Ensembl
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)Ensembl
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134210   ⟹   ENSRNOP00000100541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,140,532 - 88,158,712 (+)Ensembl
RefSeq Acc Id: NM_001427130   ⟹   NP_001414059
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,140,532 - 88,158,714 (+)NCBI
Dahl_SR_JrHsd186,760,486 - 86,778,667 (+)NCBI
Lyon_Normotensive191,897,495 - 91,915,677 (+)NCBI
Lyon_Hypertensive188,440,213 - 88,458,217 (+)NCBI
F344_StmMcwi186,886,441 - 86,904,622 (+)NCBI
RefSeq Acc Id: XM_006228495   ⟹   XP_006228557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,289 - 88,158,714 (+)NCBI
mRatBN7.2179,012,646 - 79,030,714 (+)NCBI
Rnor_6.0180,271,288 - 80,290,946 (+)NCBI
Rnor_5.0181,537,577 - 81,557,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063274155   ⟹   XP_063130225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,264 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274161   ⟹   XP_063130231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,000 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274166   ⟹   XP_063130236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,264 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274170   ⟹   XP_063130240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,267 - 88,158,714 (+)NCBI
RefSeq Acc Id: XP_006228557   ⟸   XM_006228495
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000050977   ⟸   ENSRNOT00000047105
RefSeq Acc Id: XP_063130231   ⟸   XM_063274161
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130225   ⟸   XM_063274155
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130236   ⟸   XM_063274166
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130240   ⟸   XM_063274170
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001414059   ⟸   NM_001427130
- UniProtKB: F1LW07 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100541   ⟸   ENSRNOT00000134210

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW07-F1-model_v2 AlphaFold F1LW07 1-825 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593681 AgrOrtholog
BioCyc Gene G2FUF-60509 BioCyc
Ensembl Genes ENSRNOG00000025350 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047105 ENTREZGENE
  ENSRNOT00000047105.6 UniProtKB/TrEMBL
  ENSRNOT00000134210 ENTREZGENE
  ENSRNOT00000134210.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  iASPP UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SH3_iASPP UniProtKB/TrEMBL
NCBI Gene 686781 ENTREZGENE
PANTHER PTHR24164 UniProtKB/TrEMBL
  RELA-ASSOCIATED INHIBITOR UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Ppp1r13l PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025350 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
UniProt A0ABK0LFB1_RAT UniProtKB/TrEMBL
  F1LW07 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-02 Ppp1r13l  protein phosphatase 1, regulatory subunit 13 like  LOC686781  similar to NFkB interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686781  similar to NFkB interacting protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL