Ccdc141 (coiled-coil domain containing 141) - Rat Genome Database

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Gene: Ccdc141 (coiled-coil domain containing 141) Rattus norvegicus
Analyze
Symbol: Ccdc141
Name: coiled-coil domain containing 141
RGD ID: 1593250
Description: Predicted to be involved in brain development; heterophilic cell-cell adhesion; and regulation of synapse assembly. Predicted to act upstream of or within centrosome localization and cerebral cortex radially oriented cell migration. Predicted to be located in centrosome and cytoplasm. Predicted to be active in plasma membrane. Orthologous to human CCDC141 (coiled-coil domain containing 141); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 141; coiled-coil protein associated with myosin II and DISC1; hypothetical LOC311134; hypothetical protein LOC100362894; LOC100362894; LOC311134
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,357,046 - 82,517,199 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl382,357,681 - 82,517,710 (-)EnsemblGRCr8
mRatBN7.2361,948,614 - 62,109,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,948,646 - 62,110,079 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd380,167,484 - 80,327,490 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive387,105,974 - 87,265,979 (-)NCBILyon_Normotensive
Lyon_Hypertensive379,012,310 - 79,172,317 (-)NCBILyon_Hypertensive
F344_StmMcwi360,300,764 - 60,461,296 (-)NCBIF344_StmMcwi
Rnor_6.0363,865,240 - 64,024,208 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,863,951 - 64,024,205 (-)Ensemblrn6Rnor6.0
Rnor_5.0370,435,617 - 70,594,414 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,695,400 - 59,852,872 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera361,433,996 - 61,593,776 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA,ISO)
cytoplasm  (IEA,ISO)
plasma membrane  (IBA)

Molecular Function
protein binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. Rescue of CAMDI deletion-induced delayed radial migration and psychiatric behaviors by HDAC6 inhibitor. Fukuda T, etal., EMBO Rep. 2016 Dec;17(12):1785-1798. doi: 10.15252/embr.201642416. Epub 2016 Oct 13.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20956536  


Genomics

Comparative Map Data
Ccdc141
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,357,046 - 82,517,199 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl382,357,681 - 82,517,710 (-)EnsemblGRCr8
mRatBN7.2361,948,614 - 62,109,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,948,646 - 62,110,079 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd380,167,484 - 80,327,490 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive387,105,974 - 87,265,979 (-)NCBILyon_Normotensive
Lyon_Hypertensive379,012,310 - 79,172,317 (-)NCBILyon_Hypertensive
F344_StmMcwi360,300,764 - 60,461,296 (-)NCBIF344_StmMcwi
Rnor_6.0363,865,240 - 64,024,208 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,863,951 - 64,024,205 (-)Ensemblrn6Rnor6.0
Rnor_5.0370,435,617 - 70,594,414 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4359,695,400 - 59,852,872 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera361,433,996 - 61,593,776 (-)NCBICelera
Cytogenetic Map3q24NCBI
CCDC141
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,814,978 - 179,050,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,829,757 - 179,051,697 (-)Ensemblhg38GRCh38
GRCh372179,694,484 - 179,914,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362179,408,737 - 179,457,923 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2173,288,863 - 173,509,183 (-)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2171,562,469 - 171,783,448 (-)NCBIHuRef
CHM1_12179,700,551 - 179,920,951 (-)NCBICHM1_1
T2T-CHM13v2.02179,298,041 - 179,533,308 (-)NCBIT2T-CHM13v2.0
Ccdc141
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39276,840,246 - 77,006,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl276,840,246 - 77,000,980 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38277,009,902 - 77,173,769 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,009,902 - 77,170,636 (-)Ensemblmm10GRCm38
MGSCv37276,847,963 - 77,008,692 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36276,845,810 - 76,971,475 (-)NCBIMGSCv36mm8
Celera278,671,325 - 78,831,755 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.38NCBI
Ccdc141
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540317,850,260 - 18,034,550 (+)Ensembl
ChiLan1.0NW_00495540317,850,119 - 18,032,722 (+)NCBIChiLan1.0ChiLan1.0
CCDC141
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21381,464,759 - 81,697,486 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B81,479,733 - 81,712,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B66,086,654 - 66,307,309 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B183,789,681 - 184,009,800 (-)NCBIPanPan1.1PanPan1.1panPan2
CCDC141
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13622,437,363 - 22,626,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3622,492,052 - 22,625,957 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3622,459,560 - 22,647,945 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03622,584,881 - 22,786,054 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3622,593,763 - 22,785,858 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,693,715 - 22,881,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03622,657,136 - 22,844,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,773,109 - 22,967,878 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc141
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,467,214 - 139,651,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365098,020,170 - 8,204,871 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365098,020,525 - 8,204,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC141
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1584,535,905 - 84,734,182 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11584,534,725 - 84,745,296 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21594,035,367 - 94,241,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC141
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11064,378,339 - 64,602,307 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1064,392,414 - 64,590,923 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040134,959,998 - 135,182,411 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc141
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624844784,029 - 1,004,008 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624844785,097 - 1,010,155 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc141
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1554,351,468 - 54,508,437 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc141
1336 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:12
Count of miRNA genes:11
Interacting mature miRNAs:12
Transcripts:ENSRNOT00000037015
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
BE114283  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2362,050,695 - 62,050,857 (+)MAPPERmRatBN7.2
Rnor_6.0363,965,239 - 63,965,400NCBIRnor6.0
Rnor_5.0370,535,463 - 70,535,624UniSTSRnor5.0
RGSC_v3.4359,793,919 - 59,794,080UniSTSRGSC3.4
Celera361,534,718 - 61,534,879UniSTS
Cytogenetic Map3q23UniSTS
RH137728  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2362,014,822 - 62,014,952 (+)MAPPERmRatBN7.2
Rnor_6.0363,930,237 - 63,930,366NCBIRnor6.0
Rnor_5.0370,500,614 - 70,500,743UniSTSRnor5.0
RGSC_v3.4359,757,596 - 59,757,725UniSTSRGSC3.4
Celera361,499,018 - 61,499,147UniSTS
Cytogenetic Map3q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 45 59 6 309 145 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000037015   ⟹   ENSRNOP00000036469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,360,378 - 82,517,710 (-)Ensembl
mRatBN7.2 Ensembl361,948,646 - 62,110,079 (-)Ensembl
Rnor_6.0 Ensembl363,863,951 - 64,024,205 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149776   ⟹   ENSRNOP00000103878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,357,681 - 82,517,413 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150916   ⟹   ENSRNOP00000098895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,357,681 - 82,517,105 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151447   ⟹   ENSRNOP00000103666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,360,378 - 82,517,025 (-)Ensembl
RefSeq Acc Id: NM_001430394   ⟹   NP_001417323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd380,167,484 - 80,327,490 (-)NCBI
Lyon_Normotensive387,105,974 - 87,265,979 (-)NCBI
Lyon_Hypertensive379,012,310 - 79,172,317 (-)NCBI
F344_StmMcwi360,300,764 - 60,461,296 (-)NCBI
RefSeq Acc Id: XM_003749494   ⟹   XP_003749542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,357,046 - 82,517,199 (-)NCBI
mRatBN7.2361,948,614 - 62,109,968 (-)NCBI
Rnor_6.0363,865,240 - 64,024,208 (-)NCBI
Rnor_5.0370,435,617 - 70,594,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063285277   ⟹   XP_063141347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,357,046 - 82,517,096 (-)NCBI
RefSeq Acc Id: XM_063285279   ⟹   XP_063141349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,357,046 - 82,455,141 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001417323 (Get FASTA)   NCBI Sequence Viewer  
  XP_003749542 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141347 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141349 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZEY0 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000036469.5
  ENSRNOP00000103878
RefSeq Acc Id: XP_003749542   ⟸   XM_003749494
- Peptide Label: isoform X1
- UniProtKB: D3ZEY0 (UniProtKB/TrEMBL),   A6HMI7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036469   ⟸   ENSRNOT00000037015
RefSeq Acc Id: XP_063141347   ⟸   XM_063285277
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141349   ⟸   XM_063285279
- Peptide Label: isoform X2
- UniProtKB: A6HMI8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098895   ⟸   ENSRNOT00000150916
Ensembl Acc Id: ENSRNOP00000103666   ⟸   ENSRNOT00000151447
Ensembl Acc Id: ENSRNOP00000103878   ⟸   ENSRNOT00000149776
RefSeq Acc Id: NP_001417323   ⟸   NM_001430394
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEY0-F1-model_v2 AlphaFold D3ZEY0 1-1530 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692168
Promoter ID:EPDNEW_R2688
Type:initiation region
Name:Ccdc141_1
Description:coiled-coil domain containing 141
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0364,024,133 - 64,024,193EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593250 AgrOrtholog
BioCyc Gene G2FUF-49268 BioCyc
Ensembl Genes ENSRNOG00000012580 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000037015.7 UniProtKB/Swiss-Prot
  ENSRNOT00000149776 ENTREZGENE
Gene3D-CATH 1.20.58.60 UniProtKB/Swiss-Prot
  Immunoglobulins UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  IgLON_domain UniProtKB/Swiss-Prot
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot
  Spectrin_repeat UniProtKB/Swiss-Prot
KEGG Report rno:311134 UniProtKB/Swiss-Prot
NCBI Gene 311134 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 141 UniProtKB/Swiss-Prot
  IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
  Spectrin UniProtKB/Swiss-Prot
PhenoGen Ccdc141 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012580 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
  SPEC UniProtKB/Swiss-Prot
Superfamily-SCOP Immunoglobulin UniProtKB/Swiss-Prot
  Spectrin repeat UniProtKB/Swiss-Prot
UniProt A0ABK0L8X4_RAT UniProtKB/TrEMBL
  A0ABK0LSY9_RAT UniProtKB/TrEMBL
  A6HMI7 ENTREZGENE, UniProtKB/TrEMBL
  A6HMI8 ENTREZGENE, UniProtKB/TrEMBL
  CC141_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Ccdc141  coiled-coil domain containing 141  LOC100362894  hypothetical protein LOC100362894  Data merged from RGD:2323885 737654 PROVISIONAL
2013-08-09 Ccdc141  coiled-coil domain containing 141  LOC311134  hypothetical LOC311134  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362894  hypothetical protein LOC100362894      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC311134  hypothetical LOC311134      Symbol and Name status set to provisional 70820 PROVISIONAL