Bw77 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw77 (Body weight QTL 77) Rattus norvegicus

Symbol: Bw77
Name: Body weight QTL 77
RGD ID: 1582249
Previously known as: Adiposity index
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 3.2
P Value: 0.0025
Variance: 12.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2353,184,593 - 64,655,484RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0354,630,948 - 66,711,785RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0361,249,840 - 73,270,928RGDRnor5.0
RGSC_v3.4350,522,618 - 62,558,206RGDRGSC3.4
RGSC_v3.1350,418,991 - 62,454,578RGD
Cross Type: intercross
Strains Crossed: PD/Cub BN/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/Cub  (IEA)
PD/Cub  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Dynamic genetic architecture of metabolic syndrome attributes in the rat. Seda O, etal., Physiol Genomics. 2005 Apr 14;21(2):243-52. Epub 2005 Feb 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
15976994932414N04RiklRIKEN cDNA 4932414N04 gene like35328445453518848Rat
1564400Eif5-ps1eukaryotic translation initiation factor 5, pseudogene 135356636553569726Rat
1561599Cers6ceramide synthase 635363063753879692Rat
1589692Ybx1-ps9Y box binding protein 1, pseudogene 935389125953892680Rat
727920Nostrinnitric oxide synthase trafficking35390474653970995Rat
1307811Spc25SPC25 component of NDC80 kinetochore complex35393001353988940Rat
69398G6pc2glucose-6-phosphatase catalytic subunit 235399982154005539Rat
619930Abcb11ATP binding cassette subfamily B member 1135401685454112797Rat
620655Dhrs9dehydrogenase/reductase 935414783454170052Rat
68407Lrp2LDL receptor related protein 235418930554346769Rat
40992206Cfl1-ps10cofilin 1, pseudogene 1035435215454376010Rat
11408567LOC108350390uncharacterized LOC10835039035439624654402640Rat
1310718Bbs5Bardet-Biedl syndrome 535441042954431831Rat
620852Klhl41kelch-like family member 4135443429154447415Rat
1563531Fastkd1FAST kinase domains 135444971054475624Rat
620315Ppigpeptidylprolyl isomerase G35448402354512929Rat
1308818Cfap210cilia and flagella associated protein 21035452045554554677Rat
1359274Phospho2phosphatase, orphan 235455482954561990Rat
1307166Klhl23kelch-like family member 2335458078854594530Rat
620804Ssbsmall RNA binding exonuclease protection factor La35461661654626203Rat
41097145LOC120102101small nucleolar RNA U1335462478454624882Rat
1566062Mettl5methyltransferase 5, N6-adenosine35462579054638066Rat
1565257Ubr3ubiquitin protein ligase E3 component n-recognin 335464980354806779Rat
41266482Hnrnpc-ps5heterogeneous nuclear ribonucleoprotein C, pseudogene 535472476254732130Rat
1560313Myo3bmyosin IIIB35482022555228518Rat
1308499Sp5Sp5 transcription factor35527493155277733Rat
41323100LOC120101561uncharacterized LOC12010156135529262955311439Rat
1563852Erich2glutamate-rich 235531099355347701Rat
2652Gad1glutamate decarboxylase 135536970455410335Rat
619911Gorasp2golgi reassembly stacking protein 235547444855503570Rat
41065835LOC120101562uncharacterized LOC12010156235550325255505088Rat
1310370Tlk1tousled-like kinase 135552055955627580Rat
1589691Fau-ps1FAU ubiquitin like and ribosomal protein S30 fusion, pseudogene 135563059055631800Rat
1565767Rpl15l2ribosomal protein L15 like 235569919155700292Rat
1561059Mettl8methyltransferase 8, tRNA N3-cytidine35573145355863652Rat
1565551Dcaf17DDB1 and CUL4 associated factor 1735586377655895601Rat
1305740Cybrd1cytochrome b reductase 135593487455962132Rat
11429097LOC108350392glyceraldehyde-3-phosphate dehydrogenase pseudogene35598325055993524Rat
41074405Gapdh-ps28Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2835598717755988204Rat
620174Dync1i2dynein cytoplasmic 1 intermediate chain 235603388256085080Rat
1305181Slc25a12solute carrier family 25 member 1235609716656191841Rat
1305716Hat1histone acetyltransferase 135621734456265021Rat
40932845LOC120102107U2 spliceosomal RNA35625625256256439Rat
7498194LOC102549016uncharacterized LOC10254901635626546556279458Rat
1307413Metap1dmethionyl aminopeptidase type 1D (mitochondrial)35627947156354518Rat
11426631LOC108350393uncharacterized LOC10835039335634059956364901Rat
1309593Dlx1distal-less homeobox 135635619056360780Rat
1304853Dlx2distal-less homeobox 235637023856373581Rat
7549589LOC102555148uncharacterized LOC10255514835646139656468036Rat
9400923LOC103691816uncharacterized LOC10369181635648552256490015Rat
2320728Mrps36-ps2mitochondrial ribosomal protein S36, pseudogene 235655290656553216Rat
621633Itga6integrin subunit alpha 635660451256689428Rat
69427Pdk1pyruvate dehydrogenase kinase 135670582456733040Rat
621886Rapgef4Rap guanine nucleotide exchange factor 435680938857101332Rat
41102588LOC120102074small nucleolar RNA SNORA1735682530756825429Rat
41371499LOC120102014small nucleolar RNA SNORA42/SNORA80 family35696432756964460Rat
9078858LOC103695171uncharacterized LOC10369517135704225157066815Rat
41168553LOC120101564uncharacterized LOC12010156435712938257132860Rat
1561394Map3k20mitogen-activated protein kinase kinase kinase 2035713053957289943Rat
1309363Cdca7cell division cycle associated 735732271857333353Rat
41345808Rps13-ps7ribosomal protein S13, pseudogene 735738340157393461Rat
11478808LOC108350396uncharacterized LOC10835039635743095657470280Rat
2323302Dctd-ps1dCMP deaminase, pseudogene 135751697257520591Rat
40939229LOC120101566uncharacterized LOC12010156635755767357573426Rat
1587670Eno1-ps1enolase 1, pseudogene 135757664357578321Rat
41347799LOC120101442uncharacterized LOC12010144235759414057602949Rat
41134704LOC120101567NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-like35768210557684325Rat
7704882LOC102555817dynein heavy chain 17, axonemal-like35769212657699221Rat
9224218LOC103691818uncharacterized LOC10369181835771057357714304Rat
11437224LOC108350397uncharacterized LOC10835039735772031357788490Rat
1583765Sp3Sp3 transcription factor35781185557857150Rat
9183373LOC103691820uncharacterized LOC10369182035791270257917164Rat
7612019LOC102546819uncharacterized LOC10254681935794069557992557Rat
1307982Ola1Obg-like ATPase 135796689658085955Rat
40949761Trnav-aac24transfer RNA valine (anticodon AAC) 2435807388858073969Rat
9330172LOC10369182160S ribosomal protein L27 pseudogene35808095058081356Rat
1559457Sp9Sp9 transcription factor35814682658149357Rat
1309199Cir1corepressor interacting with RBPJ, 135815892358188799Rat
1305064Scrn3secernin 335818882058213623Rat
1309162Gpr155G protein-coupled receptor 15535821642258270350Rat
620887Wipf1WAS/WASL interacting protein family, member 135831452158416668Rat
41387376Rbx1-ps2ring-box 1, pseudogene 235843219458432513Rat
11362073LOC108350398uncharacterized LOC10835039835844657458448992Rat
69277Chrna1cholinergic receptor nicotinic alpha 1 subunit35845476358469832Rat
7606520Serpinb8l1serpin family B member 8 like 135848645558510222Rat
620139Chn1chimerin 135850982258676462Rat
41236206LOC120101570uncharacterized LOC12010157035867828058682493Rat
41098957Rnu6-1136RNA, U6 small nuclear 113635868956358689673Rat
11486579Ube2s-ps4ubiquitin-conjugating enzyme E2S, pseudogene 435869707358699024Rat
621862Atf2activating transcription factor 235871832358795280Rat
41192492Rpl19-ps5ribosomal protein L19, pseudogene 535872247458723687Rat
41165060LOC120101572uncharacterized LOC12010157235879525758799419Rat
620052Atp5mc3ATP synthase membrane subunit c locus 335881053558813185Rat
9345818LOC103691823NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 pseudogene35887360558873938Rat
7527047LOC102552809uncharacterized LOC10255280935912311259135627Rat
1584075G3bp2-ps1G3BP stress granule assembly factor 2, pseudogene 135936089259362560Rat
41300198LOC120102034U1 spliceosomal RNA35940764159407795Rat
40928829LOC120102032small nucleolar RNA SNORA4835940862159408764Rat
7554897Rps7-ps11ribosomal protein S7, pseudogene 1135941704159418716Rat
1312042Lnpklunapark, ER junction formation factor35941887259487029Rat
41300438LOC120101944U6 spliceosomal RNA35949095159491051Rat
2320625Rps26-ps2ribosomal protein S26, pseudogene 235949876459538211Rat
41245427LOC120101965U6 spliceosomal RNA35952174659521846Rat
1588374Ptma-ps8prothymosin alpha, pseudogene 835954774359548317Rat
1305594Evx2even-skipped homeobox 235955819759562267Rat
1308417Hoxd13homeo box D1335957064759573963Rat
1309797Hoxd12homeo box D1235957767759578798Rat
7730597Hoxd11homeobox D1135958484059587257Rat
1306511Hoxd10homeo box D1035959451659597725Rat
1582908Hoxd9homeo box D935960057559602755Rat
6489440Hoxd8homeobox D835960779359610359Rat
40944736LOC120101573uncharacterized LOC12010157335961270659615030Rat
1309690Hoxd4homeo box D435961446459634042Rat
2325397Mir10bmicroRNA 10b35962843859628546Rat
1588601Hoxd3homeo box D335963870859650282Rat
41399479LOC120101574uncharacterized LOC12010157435965499259656589Rat
1309179Hoxd1homeo box D135966562959667769Rat
1306473Mtx2metaxin 235973020659792202Rat
41329305Snrpc-ps11small nuclear ribonucleoprotein polypeptide C, pseudogene 1136014329360143801Rat
41301375LOC120101575uncharacterized LOC12010157536019413760201089Rat
41246102LOC120101576uncharacterized LOC12010157636020335160208211Rat
11498171LOC108350401uncharacterized LOC10835040136027047060298941Rat
7733574LOC102554395uncharacterized LOC10255439536037104660401138Rat
41048592LOC120101577uncharacterized LOC12010157736038444460422413Rat
7566091LOC102554564uncharacterized LOC10255456436054150060544208Rat
727807Hnrnpa3heterogeneous nuclear ribonucleoprotein A336057857460588755Rat
620360Nfe2l2NFE2 like bZIP transcription factor 236059423960621712Rat
7560679Rpl10-ps3ribosomal protein L10, pseudogene 336062407960634739Rat
620364Agpsalkylglycerone phosphate synthase36074732360845831Rat
41031811Trnap-ggg5transfer RNA proline (anticodon GGG) 536075870560758779Rat
1590784Ift70bintraflagellar transport 70B36085580960858380Rat
1560121Ift70a2intraflagellar transport 70A236089919360901634Rat
2318157Ift70a1intraflagellar transport 70A136090189660905350Rat
621793Pde11aphosphodiesterase 11A36091356261297154Rat
41138727LOC120101579uncharacterized LOC12010157936096379660980819Rat
41199509LOC120101580uncharacterized LOC12010158036126693661268645Rat
2452Cyctcytochrome c, testis36129009061297158Rat
1596954Anp32a-ps1acidic nuclear phosphoprotein 32 family member A, pseudogene 136129134161293039Rat
628862Rbm45RNA binding motif protein 4536130597361320950Rat
1308887Osbpl6oxysterol binding protein-like 636134377661541170Rat
1306707Prkraprotein activator of interferon induced protein kinase EIF2AK236157544761594393Rat
1587131Pjvkpejvakin36159464461605051Rat
1305293Fkbp7FKBP prolyl isomerase 736160938461623710Rat
1305244Plekha3pleckstrin homology domain containing A336162343461644649Rat
621114Ttntitin36165243261924912Rat
41120841LOC120101583uncharacterized LOC12010158336170468761819104Rat
1593250Ccdc141coiled-coil domain containing 14136194861462109968Rat
1562244Sestd1SEC14 and spectrin domain containing 136212359062220759Rat
41312347Rnu6-480RNA, U6 small nuclear 48036216149362161596Rat
6500051Nsa2-ps20NSA2 ribosome biogenesis factor, pseudogene 2036227736762278418Rat
1311181Zfp385bzinc finger protein 385B36235518262640417Rat
41237371LOC120102119small nucleolar RNA U336259913262599217Rat
41353490LOC120101584uncharacterized LOC12010158436260438162611643Rat
1565385Cwc22CWC22 spliceosome associated protein36281523062864269Rat
41362468LOC120102114U2 spliceosomal RNA36292034662920495Rat
1584801Paics-ps1phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 136305576063061070Rat
1589690Hspa8-ps15heat shock protein family A (Hsp70) member 8, pseudogene 1536306810263070159Rat
1564319Pdcd5l1programmed cell death 5 like 136364461563646013Rat
40954226LOC120101585uncharacterized LOC12010158536378325263786957Rat
1308894Ube2e3ubiquitin-conjugating enzyme E2E 336378697663851400Rat
7729778LOC102552685uncharacterized LOC10255268536403516264045120Rat
1593249Itga4integrin subunit alpha 436416276464235010Rat
1561057Cerklceramide kinase-like36423871464344695Rat
41032087LOC120101977U6 spliceosomal RNA36425514664255247Rat
3165Neurod1neuronal differentiation 136435955464363526Rat
7645726LOC102553121uncharacterized LOC10255312136441340964422066Rat
9124575LOC103691830uncharacterized LOC10369183036453035764536487Rat
1310767Itprid2ITPR interacting domain containing 236453670764573978Rat
1562095Ppp1r1cprotein phosphatase 1, regulatory (inhibitor) subunit 1C36461670064719696Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34146D3Mgh610735318459353184692Ratregion
36311D3Rat3915535853954358539716Ratregion
37538D3Rat11919735522363155223816Ratregion
37756D3Rat7519635381484153815045Ratregion
36456D3Rat4114635329644153296578Ratregion
36793D3Rat4213135446087154461002Ratregion
34979D3Rat387036113421661134348Ratregion
35589D3Rat3716436465530564655484Ratregion
39638D3Rat17912436090714760907273Ratregion
39912D3Rat18010036101774961017857Ratregion
38194D3Rat10921735924209659242327Ratregion
40484D3Rat23930835431950054319800Ratregion
38472D3Rat9521535753806557538284Ratregion
38666D3Rat13443035729287357293295Ratregion
38686D3Rat8417435639596856396132Ratregion
40102D3Rat20716936434882864348997Ratregion
38870D3Rat7420936442373064423941Ratregion
39286D3Rat10822936193407961934304Ratregion
42139D3Arb816936295100862951183Ratregion
41246D3Rat17817536308228863082465Ratregion
42645D3Rat28818835569630855696486Ratregion
42646D3Rat27124136049493360495175Ratregion
42647D3Rat27221536232966862329885Ratregion
42648D3Rat27021035357736353577586Ratregion
40940D3Rat18216935481679754816958Ratregion
69530D3Uwm229135504977655050062Ratregion
66445D3Mco1415535754995557550118Ratregion
66486D3Mco2715635692085156921009Ratregion
727993D3Chm6623135609524556095476Ratregion
728008D3Chm6825036296288562962920Ratregion
728008D3Chm6825036296292062962984Ratregion
728009D3Chm6221135351357553513786Ratregion
728016D3Chm6422835474073554740965Ratregion
728020D3Chm2616535473947654739641Ratregion
728031D3Chm6520135500181955002020Ratregion
728034D3Chm6323435378111253781346Ratregion
1630180D3Got21426335643566756435930Ratregion
1630689D3Got22418436253841262538596Ratregion
1628626D3Got22222635843674658436960Ratregion
1628955D3Got21810535703808757038192Ratregion
1628981D3Got25516035876059458760754Ratregion
1629862D3Got20922335490735854907581Ratregion
1638896D3Got21124335438102454381267Ratregion
1638950D3Got29514235687607356876217Ratregion
1639716D3Got29811536154364461543754Ratregion
1639976D3Got21717135705803357058201Ratregion
1640692D3Got30127036065079560651065Ratregion
1634910D3Got22126335902677959027042Ratregion
1635612D3Got23916036334452763344687Ratregion
1636883D3Got22322336065084260651065Ratregion
1637018D3Got27829935600277756003076Ratregion
1637719D3Got28111836376597263766090Ratregion
1637965D3Got28816636368413763684303Ratregion
1638457D3Got21624835643570056435948Ratregion
1634638D3Got22011335923164159231749Ratregion
7193116Hoxd1323435957225959572493Ratregion
7206286Hoxd1294035957775959578699Ratregion
7206360Hoxd139435966633159666725Ratregion
7206362Hoxd1111335958660859586721Ratregion
7206364Hoxd468835963006159630750Ratregion
7206074Chrna173035845983558460565Ratregion
5036209D2Tfv515035922068159220831Ratregion
5038864RH12737719935456157254561771Ratregion
5036923AU04963618336128349161283674Ratregion
5037173RH8077318636436069264360878Ratregion
5037189RH9882114036167571261675852Ratregion
5028673RH8055322835724877057248998Ratregion
5028791RH14234215035552206355522213Ratregion
5029163RH14375311435632028056320394Ratregion
5026656RH13303819135444846754448658Ratregion
5029385RH14459016735441142554411592Ratregion
5034822AI23270522035462563054625850Ratregion
5032203U5100213835637066756370805Ratregion
5032343AI38559110735959708459597191Ratregion
50350101110004E09Rik25036062440660624656Ratregion
5027016RH13440919835796711357967311Ratregion
5032537T0356428736384276663843053Ratregion
5032997RH13723420435941890659419110Ratregion
5025238RH12754821636058792760588144Ratregion
502786516.MHAa47b4.seq19235904900359049195Ratregion
5030417BE11282315035635927656359426Ratregion
5030459BE10655315935826209358262252Ratregion
502797148.MMHAP28FLH6.seq15236039714160397293Ratregion
5028214D2Mit24712835998292859983057Ratregion
5028222D2Mit32912935998292859983058Ratregion
5028226D2Mit3817135959991759600088Ratregion
5030865BE12092621435551772755517941Ratregion
5028370UniSTS:15874950436436087864361382Ratregion
5033771RH14006118735784228857842475Ratregion
5025884RH13006819135959739259597583Ratregion
5055159RH14363912535796699457967119Ratregion
5051809RH9467119735757804057578240Ratregion
5057470AA85877320735337585253376043Ratregion
5054615RH14332610435530681755306921Ratregion
5059470AW52444218136212363162123812Ratregion
5055589RH14388822036090956760909787Ratregion
5055705RH14395520435634086656341070Ratregion
5058598BI28430115736059471260594869Ratregion
5059618BE09745217835728731557287493Ratregion
5056575RH14445716635701839657018562Ratregion
5052229D180617635401715954017235Ratregion
5052855RH14231318535873151558732666Ratregion
5052891RH14233315835796697857967136Ratregion
5058282AI07081117136163926961639440Ratregion
5049908RH13375118235781672457816906Ratregion
5052321U2806815336436059064360743Ratregion
5052381Z4997619935540954255409741Ratregion
5053491RH14267929035807781858078108Ratregion
5050900RH13432321935724854757248766Ratregion
5054205RH14309010935575604255756151Ratregion
5052937RH14236016235831416558314327Ratregion
5051332AW12199912535637041956370544Ratregion
5053303RH14257010035565856255658662Ratregion
5053407RH14263015036423364764233797Ratregion
5050956RH13435521035979181959792029Ratregion
5044406RH13058418636423908364239269Ratregion
5044412RH13058818735462510254625289Ratregion
5045236RH13106218636132061161320797Ratregion
5041454RH12886615235387948953879641Ratregion
5046158RH13159119735534747555347672Ratregion
5044206RH13047021436226905062269321Ratregion
5048826RH13312821036090276160902971Ratregion
5046388RH13172419935417144254171642Ratregion
5044524RH13065318336059706560597248Ratregion
5046026RH13151620636186209061862296Ratregion
5047632RH13243919735815947758159674Ratregion
5047708RH13248320335444689854447101Ratregion
5048864RH13315020635668912756689333Ratregion
5046752RH13193421635963374359633959Ratregion
5049148RH13331321435626893656269150Ratregion
5049206RH13334718435821311158213295Ratregion
5046894RH13201619135363271753632908Ratregion
5049662RH13360921736154088261541099Ratregion
5039322RH12764018636084830760848492Ratregion
5049566RH13355415035462388354624033Ratregion
5049614RH13358219335771403857714231Ratregion
5040196RH12814420936038150960381718Ratregion
5039548RH12776921735821651658216733Ratregion
5042138RH12926219135960253559602726Ratregion
5040742RH12845722035757804557578268Ratregion
5040822RH12850320435627784756278051Ratregion
5043442RH13002816636212946462129630Ratregion
5041372RH12881918535596353455963719Ratregion
5072490RH13688022036130944761309667Ratregion
5072804RH13706317636165243561652611Ratregion
5075094RH13839518636236499362365179Ratregion
5075158RH13843212335668891756689040Ratregion
5073942RH13772813036201482262014952Ratregion
5072390RH13682120336281544262815644Ratregion
5072390RH13682120336281544262815645Ratregion
5074390RH13798916435921467359214837Ratregion
5075946RH13888812036268805062688170Ratregion
5076544RH13923713636058854060588676Ratregion
5076552RH13924224935615184056152089Ratregion
5074620RH13812114936089922660899375Ratregion
5076852RH13941615135357918753579339Ratregion
5076116RH13898812635614862856148754Ratregion
5079416RH14098318935419063454190983Ratregion
5076260RH13907213735826544158265578Ratregion
5076500RH13921115135960579359605944Ratregion
5077588RH13984221635459350454593720Ratregion
5078198RH14020021035552064855520858Ratregion
5079754RH14118319735936301159363187Ratregion
5077848RH13999421735459276354592976Ratregion
5078934RH14063618635959020759590393Ratregion
5078576RH14042415935850985558510014Ratregion
5079250RH14085121435673623156736454Ratregion
5080482RH14160419535628563856285833Ratregion
5071274RH13498821035578655455786763Ratregion
5073608RH13753414436212760762127751Ratregion
5070652RH13462618735589534555895535Ratregion
5074050RH13779015436163258061632734Ratregion
5070954RH13480220935608468856084897Ratregion
5071832RH13531021535614938956149604Ratregion
5071894RH13534621435608446156084675Ratregion
5074556RH13808516535472497554725140Ratregion
5063366BI30170915036381774163817891Ratregion
5065062BF40560518635912389559124081Ratregion
5066758AU04816813835904599259046445Ratregion
5066780AU04815520636113002261130228Ratregion
5067120AU04795123835576236755762604Ratregion
5067934AU04744915135807103758071188Ratregion
5070315X6990213235668691556687047Ratregion
5070336AI6615178435456062554560709Ratregion
5069120AU04671120736409541864095625Ratregion
5063612BE10784615235871379158713943Ratregion
5063906BE12021116935480459154804761Ratregion
5065458BE11555720136085080560851006Ratregion
5062644BF40364220536074607960746284Ratregion
5064240BE11428316236205069562050857Ratregion
5062282BE10647417935838829258388471Ratregion
5062586BE10689817935577021455770393Ratregion
5062608BE10693919935385552753855726Ratregion
5087544PMC305603P121235784723157847443Ratregion
5087878Gad122135541004455410265Ratregion
5087945Hoxd921435959675059596964Ratregion
5089865AU04940913135639217156392304Ratregion
5088329AU04850414836233230162332449Ratregion
5089605AU04925424536008839860088643Ratregion
5087630PMC85623P115536436375064363905Ratregion
5090685AU04990024635381408453814330Ratregion
5090709AU04991718835526044155260629Ratregion
5090892BB10431314535965007359650218Ratregion
5089099AU04895322536008841860088643Ratregion
5085822BM39163221235908074959080961Ratregion
5083309BG37458714035724578157245921Ratregion
5081380AI07250221635588859855888814Ratregion
5081581BE11747921635397412953974345Ratregion
5502905Nfe2l2118136059512260596303Ratregion
5503103CHRNA173935845983858460577Ratregion
5504062px-58c315036339914263399292Ratregion
5504728PMC85623P328736436083564361122Ratregion
5504278D2S1570E19036172405061724240Ratregion
5504916Atf26435871938758719451Ratregion
5505426Tlk1100435552141255522416Ratregion
5505462M2SSR54B035614411956145121Ratregion
5505462M2SSR54B035614411956145131Ratregion
5504574PMC30678P217535537121455371389Ratregion
5504829ha225248436304447163044955Ratregion
5505409Mtx297035979191359792883Ratregion
5506090Neurod121336436089364361106Ratregion
5506453UniSTS:480790146635962960959631076Ratregion
5506555NEUROD1_22184236435956764360409Ratregion
5506614PTMA_1751035954805359548839Ratregion
5506989fd52b08.x1035443660854437968Ratregion
5506989fd52b08.x1035443661854437968Ratregion
5499737UniSTS:23443020135965120359651404Ratregion
5500330GDB:1928839135959718459597275Ratregion
5500553RH13592620536059491060595115Ratregion
5500619RH13632818536058629260586477Ratregion
5500769stSG612955035637685756377572Ratregion
5503536ANP32C__431474936129194061292660Ratregion
5503706UniSTS:46754065835964867659649334Ratregion
5501119PMC140695P338736436082764361214Ratregion
5504787UniSTS:27418322936436129564361524Ratregion
5501758MARC_11813-11814:1029266043:1035480345254803911Ratregion
5501786MARC_12189-12190:1004712897:113235624630856246939Ratregion
5501666Hoxd13129135957109759572388Ratregion
5505618UniSTS:485602035430925454309840Ratregion
5502004MARC_23497-23498:1027358865:166736170426361704930Ratregion
5502996Dlx275535637233856373093Ratregion
5502331RH1245029035626481456264904Ratregion
Position Markers

Flank 1: (D3Mgh6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2353,184,593 - 53,184,692 (+)MAPPER
Rnor_6.0354,630,948 - 54,631,046NCBI
Rnor_5.0361,249,840 - 61,249,938UniSTS
RGSC_v3.4350,522,619 - 50,522,717UniSTS
RGSC_v3.4350,522,618 - 50,522,717RGD
RGSC_v3.1350,418,991 - 50,419,089RGD
Celera352,752,755 - 52,752,853UniSTS
RH 3.4 Map4528.72RGD
RH 3.4 Map4528.72UniSTS
SHRSP x BN Map336.0899UniSTS
SHRSP x BN Map336.0899RGD
FHH x ACI Map339.47RGD
Cytogenetic Map3 RGD
Peak: (D3Mgh6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2353,184,593 - 53,184,692 (+)MAPPER
Rnor_6.0354,630,948 - 54,631,046NCBI
Rnor_5.0361,249,840 - 61,249,938UniSTS
RGSC_v3.4350,522,619 - 50,522,717UniSTS
RGSC_v3.4350,522,618 - 50,522,717RGD
RGSC_v3.1350,418,991 - 50,419,089RGD
Celera352,752,755 - 52,752,853UniSTS
RH 3.4 Map4528.72RGD
RH 3.4 Map4528.72UniSTS
SHRSP x BN Map336.0899UniSTS
SHRSP x BN Map336.0899RGD
FHH x ACI Map339.47RGD
Cytogenetic Map3 RGD
Flank 2: (D3Rat37)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2364,655,305 - 64,655,484 (+)MAPPER
Rnor_6.0366,711,607 - 66,711,785NCBI
Rnor_5.0373,270,750 - 73,270,928UniSTS
RGSC_v3.4362,558,028 - 62,558,206UniSTS
RGSC_v3.4362,558,027 - 62,558,206RGD
RGSC_v3.1362,454,399 - 62,454,578RGD
SHRSP x BN Map340.5698UniSTS
SHRSP x BN Map340.5698RGD
Cytogenetic Map3q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)35318459364655484Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general these rats were on a high sucrose diet (HSD; 70% calories as sucrose) for 1 week; while still on sucrose diet, dexamethasone (DEX) was given in drinking water (0.026mg/ml) for 3 days then these animals were killed and the adiposity index was determined 1580752
qtl_statistics_details specific pairs of variables were compared by one or two way ANOVA with post hoc Tukey's honest significance difference test 1580752