Advanced Search (OLGA)

Gene: Jarid2 (jumonji and AT-rich interaction domain containing 2) Rattus norvegicus

Analyze

Symbol:

Jarid2

Name:

jumonji and AT-rich interaction domain containing 2

RGD ID:

1591663

Description:

Predicted to enable several functions, including chromatin binding activity; ubiquitin binding activity; and ubiquitin-modified histone reader activity. Predicted to contribute to histone H3K27 methyltransferase activity. Involved in negative regulation of cardiac muscle cell proliferation and negative regulation of cardiac muscle hypertrophy. Predicted to be located in nucleoplasm. Predicted to be part of ESC/E(Z) complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

jumonji, AT rich interactive domain 2; LOC681740; similar to jumonji protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	19,983,217 - 20,163,598 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	19,983,217 - 20,161,970 (-)	Ensembl				GRCr8
mRatBN7.2	17	19,777,487 - 19,957,696 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	19,777,266 - 19,955,690 (-)	Ensembl				mRatBN7.2
Rnor_6.0	17	20,183,440 - 20,365,219 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	20,184,245 - 20,364,714 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	22,193,534 - 22,368,495 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	17	19,477,856 - 19,658,598 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aortic valve stenosis (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

autosomal dominant intellectual developmental disorder (ISO)

DEVELOPMENTAL DELAY WITH VARIABLE INTELLECTUAL DISABILITY AND DYSMORPHIC FACIES (ISO)

genetic disease (ISO)

intellectual disability (ISO)

microcephaly (ISO)

multiple sclerosis (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-diaminotoluene (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

camptothecin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

geraniol (ISO)

hydralazine (ISO)

hydrogen peroxide (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nitrates (ISO)

Nor-9-carboxy-delta9-THC (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quartz (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cellular response to leukemia inhibitory factor (ISO)

chromatin organization (IEA)

chromatin remodeling (IBA)

DNA-templated transcription (IEA)

facultative heterochromatin formation (ISO)

gene expression (ISO)

liver development (ISO)

negative regulation of cardiac muscle cell proliferation (IDA,IMP)

negative regulation of cardiac muscle hypertrophy (IGI,IMP)

negative regulation of cell population proliferation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

protein localization to pericentric heterochromatin (ISO)

random inactivation of X chromosome (ISO)

regulation of cell population proliferation (ISO)

regulation of gene expression (IBA)

spleen development (ISO)

stem cell differentiation (ISO)

system development (IEA)

thymus development (ISO)

Cellular Component

chromatin (IBA)

ESC/E(Z) complex (ISO)

histone methyltransferase complex (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

ribonucleoprotein complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA,ISO)

histone demethylase activity (IBA,ISO)

histone H3K27 methyltransferase activity (ISO)

protein binding (ISO)

ubiquitin binding (ISO)

ubiquitin-modified histone reader activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Induction by left ventricular overload and left ventricular failure of the human Jumonji gene (JARID2) encoding a protein that regulates transcription and reexpression of a protective fetal program.	Bovill E, etal., J Thorac Cardiovasc Surg. 2008 Sep;136(3):709-16. doi: 10.1016/j.jtcvs.2008.02.020. Epub 2008 Jun 9.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	SET for life: biochemical activities and biological functions of SET domain-containing proteins.	Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
4.	miRNA-204 drives cardiomyocyte proliferation via targeting Jarid2.	Liang D, etal., Int J Cardiol. 2015 Dec 15;201:38-48. doi: 10.1016/j.ijcard.2015.06.163. Epub 2015 Jul 2.
5.	Immune function genes CD99L2, JARID2 and TPO show association with autism spectrum disorder.	Ramos PS, etal., Mol Autism. 2012 Jun 9;3(1):4. doi: 10.1186/2040-2392-3-4.
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Loss of MicroRNA-155 protects the heart from pathological cardiac hypertrophy.	Seok HY, etal., Circ Res. 2014 May 9;114(10):1585-95. doi: 10.1161/CIRCRESAHA.114.303784. Epub 2014 Mar 21.
10.	Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put.	Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.

Additional References at PubMed

PMID:9376320	PMID:11301191	PMID:12890668	PMID:15870077	PMID:19010785	PMID:20064375	PMID:20064376	PMID:20075857	PMID:20439489	PMID:26523946	PMID:30253332	PMID:31451685

Genomics

Comparative Map Data

Jarid2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	19,983,217 - 20,163,598 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	19,983,217 - 20,161,970 (-)	Ensembl				GRCr8
mRatBN7.2	17	19,777,487 - 19,957,696 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	19,777,266 - 19,955,690 (-)	Ensembl				mRatBN7.2
Rnor_6.0	17	20,183,440 - 20,365,219 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	20,184,245 - 20,364,714 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	22,193,534 - 22,368,495 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	17	19,477,856 - 19,658,598 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JARID2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	15,246,069 - 15,522,042 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	15,244,937 - 15,522,042 (+)	Ensembl			hg38	GRCh38
GRCh37	6	15,246,300 - 15,522,273 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	15,354,506 - 15,630,232 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	15,354,505 - 15,630,232	NCBI
Celera	6	16,484,424 - 16,760,206 (+)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	15,193,519 - 15,469,507 (+)	NCBI		HuRef
CHM1_1	6	15,248,791 - 15,524,763 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	15,119,264 - 15,395,212 (+)	NCBI		T2T-CHM13v2.0

Jarid2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	44,881,817 - 45,075,119 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	44,882,950 - 45,075,119 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	44,730,774 - 44,921,643 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	44,729,474 - 44,921,643 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	44,826,272 - 45,016,350 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	44,741,875 - 44,931,953 (+)	NCBI		MGSCv36	mm8
Celera	13	45,807,063 - 45,996,635 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	21.66	NCBI

Jarid2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955590	384,817 - 626,684 (-)	Ensembl
ChiLan1.0	NW_004955590	383,810 - 512,854 (-)	NCBI	ChiLan1.0	ChiLan1.0

JARID2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	29,909,788 - 30,187,083 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	25,898,789 - 26,175,921 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	15,100,415 - 15,376,505 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	15,466,681 - 15,740,928 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	15,466,050 - 15,739,170 (+)	Ensembl			panPan2	panpan1.1

JARID2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	14,476,656 - 14,737,535 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	14,445,914 - 14,736,158 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	14,425,042 - 14,685,518 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	14,573,294 - 14,834,551 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	14,540,390 - 14,833,877 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	14,399,422 - 14,659,727 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	14,450,826 - 14,711,538 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	15,776,504 - 16,037,565 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Jarid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	9,944,101 - 10,164,788 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936552	1,566,788 - 1,785,490 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936552	1,566,382 - 1,786,837 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JARID2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	11,359,230 - 11,601,401 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	11,358,243 - 11,601,715 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	11,977,677 - 12,191,165 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JARID2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	56,651,752 - 56,928,650 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	56,651,596 - 56,928,126 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	15,284,556 - 15,562,330 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jarid2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	10,933,717 - 11,199,077 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	10,932,148 - 11,079,609 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Jarid2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	63,733,712 - 63,911,943 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Jarid2
1728 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	28
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000070962, ENSRNOT00000071374
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9266755	40968173	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9206505	23859062	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9206505	23859062	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15537025	28637951	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9206505	23859062	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2120843	22087569	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat

Markers in Region

D13Mit179

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	19,924,168 - 19,924,242 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	20,332,077 - 20,332,150	NCBI	Rnor6.0
Rnor_5.0	17	22,336,422 - 22,336,495	UniSTS	Rnor5.0
RGSC_v3.4	17	25,742,449 - 25,742,522	UniSTS	RGSC3.4
Celera	17	19,625,945 - 19,626,018	UniSTS

RH129878

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	19,776,508 - 19,776,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	20,182,180 - 20,182,329	NCBI	Rnor6.0
Rnor_5.0	17	22,192,935 - 22,193,084	UniSTS	Rnor5.0
Celera	17	19,476,874 - 19,477,023	UniSTS
RH 3.4 Map	17	248.3	UniSTS

RH140095

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	20,132,161 - 20,132,379 (+)	Marker Load Pipeline
mRatBN7.2	17	19,926,075 - 19,926,293 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	20,333,688 - 20,333,905	NCBI	Rnor6.0
Rnor_5.0	17	22,337,783 - 22,338,000	UniSTS	Rnor5.0
RGSC_v3.4	17	25,744,389 - 25,744,606	UniSTS	RGSC3.4
Celera	17	19,627,851 - 19,628,068	UniSTS
RH 3.4 Map	17	246.9	UniSTS

Jarid2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	19,797,274 - 19,797,498 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	20,202,407 - 20,202,630	NCBI	Rnor6.0
Rnor_5.0	17	22,213,019 - 22,213,242	UniSTS	Rnor5.0
Celera	17	19,497,646 - 19,497,869	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000070962 ⟹ ENSRNOP00000067055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	19,983,217 - 20,161,970 (-)	Ensembl
mRatBN7.2 Ensembl	17	19,777,266 - 19,955,690 (-)	Ensembl
Rnor_6.0 Ensembl	17	20,184,245 - 20,364,714 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122788 ⟹ ENSRNOP00000100119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	19,983,217 - 20,159,781 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128989 ⟹ ENSRNOP00000112380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	19,983,217 - 20,058,757 (-)	Ensembl

RefSeq Acc Id:

NM_001427247 ⟹ NP_001414176

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,161,970 (-)	NCBI

RefSeq Acc Id:

XM_017600707 ⟹ XP_017456196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,064,939 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,852,919 (-)	NCBI
Rnor_6.0	17	20,183,440 - 20,261,913 (-)	NCBI

Sequence:

show sequence

CTTCTTCCTCTTATAATAATGATAATATTATTAATTCGTGGAGTCTGTCATCTGTTAGTTAAGT
CACCTGGCAGCCTATATGGTCTTCTGCCTTTCCTATGGATGTTTTTGGGTTGCGGGGATTAATC
GCGTAGAATGTTCACATACCAGGGTTTTTGCAGCTTGCGTGTACCAGGAGCTAGAAACAGAAGA
GGTGTACCACCATAAGACCGTGGGCCGAGAAAGACTTCTCTCTGTGCTATAACCCCAAGGCCTG
CCTCTTGTCTCTTGGTAGTTGGCTTTCAATATGGGCTAGATTTGTTGTTGTTGTTCTCGTTTGT
TTGTTTGTTTGTTTAAGCTCAGTTTTTAAGTTATGGGTCCTAGGTAGCCCAGACTTGTCTTGTG
GTGGCCCCCCTGTCTGTATTCCCAACTGCTAGAATAACAATTGTAAGCCACAGAATATAGCTTA
GCTTACTTCTCAGGGTGGTTATTTGAATGAAATATAAGGTCTTAGCATTCTGAAGGAACAGGTT
TGTTAATGCAGTTTGCCTCTTGGAAAGCTGAGTCAGATAAACAGTGTCCTTCCTCTCATAGACA
AGACATATAAGTTGGAATTAGCTCTGGTAATTTATCTCTTCAGAAGCTAAATGCATATCAAGAG
TTTTTTGGAGTTTGCCCAACTTAGTGATAATGGTGGGAGTTGATTATGGAAGAGGCAAACTAGA
CCCTCACGTACCCTGAGGTTGGTTGATTATTAGGTAGGCCAAGCATGTATTTGGCTGACTGCAT
AGAAAGGCTTTGGTGTGAGGGCCTTTCTGATAGTCCAGTCTCTCCCTAAGTAAGATTTTTAAGT
ACAGTCCTTGTGTTTTCTGATTTCCGAGTAACACAATGTCTTCATGGAGACATTTAGAGATTTA
CGGATAACGTCTGACACCTGCTTGTGCAAGTGCTTTATCTGAGTGCTGCTGCTATGCTTTCAGC
TTATCAGTTTGAACATTTTAGAGTGAGGATGTCTACTAATTATGTTCCTAGACATACATACATA
CATCAAAGAAAAATACTGTAGTGCTTCCTTCTTGGAGAGCACAAAGTAGTTGGAGTATATCGAA
ACAGTGGAAATTAGTGTCTCTGAACAAAGAAATCAGGATAACAGAGGGATAGCTGAAAGTTATC
TACTGTCCAGGATCAGAATTCATTTTATAAAGGAGAGAGGAAGAGAAGCTAGCTGTACTTGGTT
TGACTTACCTCTAATACTAGAATGTCAAAGTCAAGGCAATGGTGGCATTATGAAATTGGATATC
TTTTTATATTATTAAGTTGAAAAGGCTGTGTTTCAACTCATCAGCTGACCCCCCCCCCCCAATA
TAAAAAACAAAAAGAAGGGATGCTGTTTGTTCCATCTCCTACTTACAGTGATCCCTCCAATAGG
GTACTGGGTCAATACCTTAGCCAATCAGCTGCTGCAAACATAGTGTTGTCAATAAATAAATTGT
TTTCAGCTTTTTGTGCCACAGAGCCACATAGTCATTAACTTGAACCAGAAGTCAAATGTAAACA
CCTATTTTAGTTTCTTTCAAGAGGATACCAGCAGCAATGACTGGAGAAGAGCTTCTTAGAGCTG
GGGCATTGTAAAGGGAAGCTAGAATCTGTATATGATTCTCACACTTCATTTCTCTCCAACCGTA
TATGTGTAACAGGTTCCCTCTTTCTCATCTCATTTCCCCAGAAGTGGTGTTCACCAAAATTTCT
GGCTTTCTTCTTTACAGTTTCCTGCTGTGGGTGCTTTCATTAGAGCCAACTGAAACTGAGTCTG
CAATAATGGAGTGGTGGAGAGATTCTTCTTGTATGGCCTCCTTCCTGTCTAAGGAAGGAACCCA
GACTAGCCTGAGCCACCGCTTTATCATTTATACAATGCAGTGGCACCAGTCTGTATGTGGGTAT
CACAGGCTTCAGAGAAGATGTCACTTCCCTCTTCAGAAAATGCTGTGCTTTTAGTATGTTTTCC
ACGGTGACCTAAGAAGTGGCCATGGTAACTGTCAGGTATCACACCTCAGGAAAAGCTAGCATCT
GCCTTTACCATTTGCAAGGTTTAACTTAATTAGTGCCTGTATTTTAAAAGCCCCAAAAGGTAAA
ATAACACAGTCAACTCATTAGGATGGGGTGTCCCATTGCCTTGAGTATGAACTTTGTTTCAGTG
CCCTGCTCGGTTTTCAGCCACCATCTTTGCTTGTCTTGGAAAGACATAAAGAGAAGCATGTGGG
TAGTGCAAAGCATGTGTTTTGCACATCATTGTCAGATGAAGTTCAAAAGCTTCAAAGAAAATGA
CTTTGAAAATTAAAAAACAAAAAAGAGACCTGTGCCCCAGTTGGGGAGGCCAGTTGGAGGCCTG
CCTTTTTCACCCCTCTCAGCAGCTGCTAGGCTACAGAGCCTGTTTTGTGAAAGATCCTCCAGAA
ACAATGAGGGAAAACAGCTTCAGCTTGATTAGATTAGATCAATTTATGTGCCGTGGGGAGGGGC
CTAGGCAGGGCTGGGGGAGGGGTGTGCTGTGCTGGCAGTGGCCCATGCCTGCCCATCCGGTCAC
TTCCCAAGTAATGAAGCTCCCGTGGTGGCTGGAATTGCAGGAGGGGGGAGGGAGGAATTGGAGG
AGGAGCATGTGAAGAGAGATTTCTGCAGTCTGTCTGGAGAGCTGCCCAGGTTTCCCAGCCAAAA
AAACAAATAAAAATAAATAAAAGCCAAGTGCTGAATGACACAGATTATGATATTAAAAAGGGAT
ACCGTTGAAACATTGCCCTGTTCCCTGCTGTTGTTGGAGATGGGTGTGTGCAGCAGGGAGGGGC
AGTTAGTGCACTGTATAACAGGCCATTCCTTGGACATAAAAGTCCGTACAATTAAATTGTGAGT
GTCCCTTGCCAATAGGGTCCCCTCCCCCCTCGTGGCAGAAATTCTGTAATTTTGATTTGTCTGC
ATTGCAGGTTGTGGAAATAGCAGGATGGAAAGCTAGTTCCCTTCGCCTTTTCTCATTTTAATTC
ATCAAAATGGCAAAAACCAGGGAGGGGGAAAGTCAGCCAGATGCCCCCTCCTTTCAGTGTTCAA
TTCTCTTGCAGGCACATAAATAATCTTCTCTCCGACTGTCTCCCCTCCCCCTCAGCCCCCGCTG
GTGTTCGGCTGTCCTATTGCCTCGCGGAGTCTGCACTGCCGCTTGCTTATTACGTACTGGGGAG
GATTGTTGACAAGTGCTCCGGAGCCTGCCTCACTGCGTTCTCCCTCCCTCCCTCCCCTCCTCTG
TCCTTCTTCCTCTGTCTCTGCAATGATCCGGCTCTGAGGATGGCTGCTCCACGGGTCTGTCAGG
TGCAGTTTTTGGTGGCTTATCTTGAGGAACCTGGGATAGAAGGGCTCCTTGGTAATGACCAGTC
TAAGGCATTAGGACCAGCTTCAGAGCAGTCAGAGAATGAGAAGGATGATGCCTCCCAAGTGTCC
TCTACTAGCAACGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAGGCCCAGGC
TGCAAGCACAAAGGAAGTTTGCTCAGTCTCAGCCGAACAGTCCCAGCACAACTCCAGTGAAGAC
AGTGGAGCCTTTGCTGCCCCCGCCAGCTACTCACATTTCTGACCTCTCTAAAAGGAAGCCTAAG
ACAGAGGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCTGCCCAACAGTATGGTAT
ATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAGGAGGAAGATGATGAGACAGAAGATGTCAA
AACAGCCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAATCCCATAAG
CATGTACACAACGGGCATGTTTTCAATGGCTCCAACAGGTCAGCACGGGAGAAGGAACCTGCTC
AGAAACACAGAGGCAGAGAGGCCACGCCCGGGAAGGAGAAGCACAGTGAGCACAGGGCTGATGG
CCGGAGGGAGCAGGCTTCAGTGGCTCAGCCCACAGCCAACCCGCCTGCGGGCTCCTCGACCAAG
GGGCTCGCCGCCAGCCACCAGCCTCCCCCTTCACATCGCTCGGCTCAGGATTCACGGAAACAGG
TGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAA
GATCCGAGAAGTCAGACCGTCACCATCCAAAACTGTGAAGTACACTGCCACAGTGACCAAGGGG
ACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCCAGCCACCACAAAC
CCAGTTCAGCCGTCAACCACACAATCTCAGGGAAAAGTGAAAGTAGCAATGCAAAAACCCGCAA
ACAGGTGCTATCCCTCGGGGGGGCGTCCACGTCCACCGCGCCGGCTGCCAGCGGCCTCAAGGCC
AGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGCTGAGGGAGGGGC
TGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAGGTGGATAAGCAGCAGTCACCCCCCAA
GAAGATGAAGGGGACAGCAGGCATTGCTGAAGCCCCTGGCAGAAAGGCCTCGGCGGCTTCAGGA
GAGAAGTCTCTGCTGAACGGACACGTGAAGAAGGAAGTGCCCGAGCGGAGTTTGGAAAGGAATC
GGCCAAAACGGGCCGCAGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGTCAGAGGG
CACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCACGACCCGCAG
GGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCA
GGCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTCCGTGCTCAGGTGGA
GAAGTACGGGATGTGTCGCGTGATCCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGAC
GAGATGCGCTTTGTCACGCAGATCCAGCACATCCACAAGCTGGGCCGGCGCTGGGGCCCCAATG
TACAGCGGCTTGCCTGTATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAACTCCC
CCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGC
ATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATCCCCAAAA
CTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATGACTC
CTTGTCCCCCGAGGAGCACCGACGACTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTAGAA
AAGCGCAAAGGGCCATTAGAGGGGCACACAGAGAACGACCACCACAAGTTCCACTCCCTGCCCC
GCTTTGAGCCCAAGAATGGGCTCATCCATGGTGTTACACCCAGGAATGGCTTCCGTAGCAAGCT
CAAGGAGGTGGGCCGGGCACCACTCAAGACAGGCCGGCGGCGACTGTTCGCTCAGGAAAAAGAA
GTGGTCAAAGAGGAAGAAGAAGACAAAGGTGTCCTCGATGACTTCTACAAGTGCATCTACAAGG
GAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGCTTCAG
CAAGGAGCCCGCACCAGCAGAGATCGAGCAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGT
CATGTGGCCGTTCACTGTGGAAAGGTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGGA
AATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTTCTCCCCAATAACACAGGGTCCAT
CCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTT
TCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATCGACTACTTACACACTGGTG
CTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAAGATGTGGTCCACAC
CCTGTTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATGATCTCCCCA
GAGGTGCTGTGCAAGGAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGCGGGCAGTTCGTTG
TCTGCTTTCCTGGATCCTTTGTGTCTAAAGTGTGCTGTGGTTACAACGTCTCTGAGACTGTGCA
CTTTGCTACTACCCAGTGGACGAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCGCCAT
ATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCGAAAAAGG
AAAATGGCCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTCAGGGACACAGAGCTGCG
GCAGCGCAGGCAGCTGTTTGAGGCCGGCCTTCATTCTTCCGCACGCTATGGCAGCCATGACGGC
AGCAGCGCAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTGGCTGCAGCTGGAGACTTCAGAGA
GGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCGATGGTGGTACAGGAGAATGAGAACGT
CGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAAAAACAGAAGTCTTGCCGTGGGCTGAAG
CTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCAAAGTGT
CTGGCAAACACGGTGGCATTGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCCGCAA
GAGAGCGACTGTGGATGTGCCGCCATCTCGGCTCCCGTCCTCATGAAGATGCTGAACCCACGGT
CACTCACTTCTATATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGATACAA
GCTGTCTTTGCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTTTTAG
CATTAAACTGTTGAAGTTTTGTACGTAGACACCTAGGTCCTGCAGTCAGGTTGGAAGCTGCGTG
CACTCACTGTCTAAACCCTTGAGGGCTGGATTGATTTGTGTCGCCCCACGGCTGAGAAAAGCCT
TTTTTGTTTGTTTTTGTTTTGTTTTGGTAACTGTTAAAGAATAAAGGCTTTTTAACCCATTTTT
GAAGAGGGTGAAGTTTGGAGAACAAGTTTTAAAACCATCAGTCAGATGAGATTTTTTCTAGTTT
GGAAAAGGGATAGAGGACTCTCACACACACACACACACACACACACACACACACACACACGAAA
ACTTGAAATGGCTTTTTTTGGCTGTCTTTTCTTCTGACATTGCGAGGGGAGTTTGTAACTTTGA
GCCCCGTTTGTTTGGCTGGGCGGCTATGGCAGCTGAAGCGAAATGTGAGGTTTGAGTGACGAGG
TTCTCACACCAGCACATCACTATGCATCCGCTCGAGGAAGAGAGAGGACAAAGACTGCCTGCCT
TGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTTT
TTTTTTGGTGCTGTTGGCTACTTTATCAAAAACAAAAAACCCTTCGATAGCATCCTTGAGGAAA
GAGGAAAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCACGTGCAATCTCCTGACATCCCA
CCTCCATCTCTGCTCGTGTCCCTCACACATCAGCATTAATCTCTGTTTCCCACACTTGGCCACT
AAGTCTGCAGTTGTTTTGAATGTGAAGACACATCTGTGCTCATCCTGTCTGTTTTTTCTCTTCA
TGTTTTAACAAAAAAGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600708 ⟹ XP_017456197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,162,568 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,956,496 (-)	NCBI
Rnor_6.0	17	20,183,440 - 20,364,717 (-)	NCBI

Sequence:

show sequence

CACGCTGGGAATTGTAGTTCTTAGCTTCCGTGGCCATAGCCATTTTGTAGTCAAGGGACTACAA
CTTCCAGAAGATCAAGGGGACTATTCTAAGGTGCCCCGGGAATAGGCGGCTCTCCCCCGGGCCG
GGCGTCCTGGGGCAGTGGTACCCTGCTGCCCGGCTGCAGGTAGACGTGAGGGCAGTGGCGAAGG
CTTGCATGCGGCGACTGTTGGGCGAATCTGGCTTTGGGGGAAGAGGAAGAAAAGTCGGATTACA
AGATCAACCACCACCACCAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCT
TTAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAA
AGACCCAAGAGGAATATCATTCAGAAGAAATACGACGACAGTGATGGGATCCCGTGGTCAGAAG
AGAGAGTCGTTCGGAAAGTCCTTTATTTGTCTCTAAAGGAATTCAAGAATGCACAGAAAAGGCA
GCATGGGGAAGGCATTGCTGGGAGCCTGAAAACAGTGAATGGGCTCCTTGGTAATGACCAGTCT
AAGGCATTAGGACCAGCTTCAGAGCAGTCAGAGAATGAGAAGGATGATGCCTCCCAAGTGTCCT
CTACTAGCAACGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAGGCCCAGGCT
GCAAGCACAAAGGAAGTTTGCTCAGTCTCAGCCGAACAGTCCCAGCACAACTCCAGTGAAGACA
GTGGAGCCTTTGCTGCCCCCGCCAGCTACTCACATTTCTGACCTCTCTAAAAGGAAGCCTAAGA
CAGAGGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCTGCCCAACAGTATGGTATA
TTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAGGAGGAAGATGATGAGACAGAAGATGTCAAA
ACAGCCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAATCCCATAAGC
ATGTACACAACGGGCATGTTTTCAATGGCTCCAACAGGTCAGCACGGGAGAAGGAACCTGCTCA
GAAACACAGAGGCAGAGAGGCCACGCCCGGGAAGGAGAAGCACAGTGAGCACAGGGCTGATGGC
CGGAGGGAGCAGGCTTCAGTGGCTCAGCCCACAGCCAACCCGCCTGCGGGCTCCTCGACCAAGG
GGCTCGCCGCCAGCCACCAGCCTCCCCCTTCACATCGCTCGGCTCAGGATTCACGGAAACAGGT
GTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAAG
ATCCGAGAAGTCAGACCGTCACCATCCAAAACTGTGAAGTACACTGCCACAGTGACCAAGGGGA
CTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCCAGCCACCACAAACC
CAGTTCAGCCGTCAACCACACAATCTCAGGGAAAAGTGAAAGTAGCAATGCAAAAACCCGCAAA
CAGGTGCTATCCCTCGGGGGGGCGTCCACGTCCACCGCGCCGGCTGCCAGCGGCCTCAAGGCCA
GCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGCTGAGGGAGGGGCT
GCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAGGTGGATAAGCAGCAGTCACCCCCCAAG
AAGATGAAGGGGACAGCAGGCATTGCTGAAGCCCCTGGCAGAAAGGCCTCGGCGGCTTCAGGAG
AGAAGTCTCTGCTGAACGGACACGTGAAGAAGGAAGTGCCCGAGCGGAGTTTGGAAAGGAATCG
GCCAAAACGGGCCGCAGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGTCAGAGGGC
ACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCACGACCCGCAGG
GCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAG
GCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTCCGTGCTCAGGTGGAG
AAGTACGGGATGTGTCGCGTGATCCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGACG
AGATGCGCTTTGTCACGCAGATCCAGCACATCCACAAGCTGGGCCGGCGCTGGGGCCCCAATGT
ACAGCGGCTTGCCTGTATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAACTCCCC
CTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCA
TGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATCCCCAAAAC
TGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATGACTCC
TTGTCCCCCGAGGAGCACCGACGACTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTAGAAA
AGCGCAAAGGGCCATTAGAGGGGCACACAGAGAACGACCACCACAAGTTCCACTCCCTGCCCCG
CTTTGAGCCCAAGAATGGGCTCATCCATGGTGTTACACCCAGGAATGGCTTCCGTAGCAAGCTC
AAGGAGGTGGGCCGGGCACCACTCAAGACAGGCCGGCGGCGACTGTTCGCTCAGGAAAAAGAAG
TGGTCAAAGAGGAAGAAGAAGACAAAGGTGTCCTCGATGACTTCTACAAGTGCATCTACAAGGG
AAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGCTTCAGC
AAGGAGCCCGCACCAGCAGAGATCGAGCAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGTC
ATGTGGCCGTTCACTGTGGAAAGGTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGGAA
ATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTTCTCCCCAATAACACAGGGTCCATC
CTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTT
CTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATCGACTACTTACACACTGGTGC
TGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAAGATGTGGTCCACACC
CTGTTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATGATCTCCCCAG
AGGTGCTGTGCAAGGAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGCGGGCAGTTCGTTGT
CTGCTTTCCTGGATCCTTTGTGTCTAAAGTGTGCTGTGGTTACAACGTCTCTGAGACTGTGCAC
TTTGCTACTACCCAGTGGACGAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCGCCATA
TAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCGAAAAAGGA
AAATGGCCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTCAGGGACACAGAGCTGCGG
CAGCGCAGGCAGCTGTTTGAGGCCGGCCTTCATTCTTCCGCACGCTATGGCAGCCATGACGGCA
GCAGCGCAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTGGCTGCAGCTGGAGACTTCAGAGAG
GAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCGATGGTGGTACAGGAGAATGAGAACGTC
GTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAAAAACAGAAGTCTTGCCGTGGGCTGAAGC
TGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCAAAGTGTC
TGGCAAACACGGTGGCATTGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCCGCAAG
AGAGCGACTGTGGATGTGCCGCCATCTCGGCTCCCGTCCTCATGAAGATGCTGAACCCACGGTC
ACTCACTTCTATATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGATACAAG
CTGTCTTTGCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTTTTAGC
ATTAAACTGTTGAAGTTTTGTACGTAGACACCTAGGTCCTGCAGTCAGGTTGGAAGCTGCGTGC
ACTCACTGTCTAAACCCTTGAGGGCTGGATTGATTTGTGTCGCCCCACGGCTGAGAAAAGCCTT
TTTTGTTTGTTTTTGTTTTGTTTTGGTAACTGTTAAAGAATAAAGGCTTTTTAACCCATTTTTG
AAGAGGGTGAAGTTTGGAGAACAAGTTTTAAAACCATCAGTCAGATGAGATTTTTTCTAGTTTG
GAAAAGGGATAGAGGACTCTCACACACACACACACACACACACACACACACACACACACGAAAA
CTTGAAATGGCTTTTTTTGGCTGTCTTTTCTTCTGACATTGCGAGGGGAGTTTGTAACTTTGAG
CCCCGTTTGTTTGGCTGGGCGGCTATGGCAGCTGAAGCGAAATGTGAGGTTTGAGTGACGAGGT
TCTCACACCAGCACATCACTATGCATCCGCTCGAGGAAGAGAGAGGACAAAGACTGCCTGCCTT
GGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTTTT
TTTTTGGTGCTGTTGGCTACTTTATCAAAAACAAAAAACCCTTCGATAGCATCCTTGAGGAAAG
AGGAAAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCACGTGCAATCTCCTGACATCCCAC
CTCCATCTCTGCTCGTGTCCCTCACACATCAGCATTAATCTCTGTTTCCCACACTTGGCCACTA
AGTCTGCAGTTGTTTTGAATGTGAAGACACATCTGTGCTCATCCTGTCTGTTTTTTCTCTTCAT
GTTTTAACAAAAAAGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600709 ⟹ XP_017456198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,163,119 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,957,039 (-)	NCBI
Rnor_6.0	17	20,183,440 - 20,365,219 (-)	NCBI

Sequence:

show sequence

ACACGGGCGCTGTCCTGAGGTGACACCGCCTGCAACGGCAGAAGCAGCAGACGCCGCCGATCAG
CGAGTTCGCACCGAGGATTCCTCTTGGCGAATCTGGCTTTGGGGGAAGAGGAAGAAAAGTCGGA
TTACAAGATCAACCACCACCACCAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGA
CGGCTTTAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCA
AGGAAAGACCCAAGAGGAATATCATTCAGAAGAAATACGACGACAGTGATGGGATCCCGTGGTC
AGAAGAGAGAGTCGTTCGGAAAGTCCTTTATTTGTCTCTAAAGGAATTCAAGAATGCACAGAAA
AGGCAGCATGGGGAAGGCATTGCTGGGAGCCTGAAAACAGTGAATGGGCTCCTTGGTAATGACC
AGTCTAAGGCATTAGGACCAGCTTCAGAGCAGTCAGAGAATGAGAAGGATGATGCCTCCCAAGT
GTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAGGCCC
AGGCTGCAAGCACAAAGGAAGTTTGCTCAGTCTCAGCCGAACAGTCCCAGCACAACTCCAGTGA
AGACAGTGGAGCCTTTGCTGCCCCCGCCAGCTACTCACATTTCTGACCTCTCTAAAAGGAAGCC
TAAGACAGAGGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCTGCCCAACAGTATG
GTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAGGAGGAAGATGATGAGACAGAAGATG
TCAAAACAGCCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAATCCCA
TAAGCATGTACACAACGGGCATGTTTTCAATGGCTCCAACAGGTCAGCACGGGAGAAGGAACCT
GCTCAGAAACACAGAGGCAGAGAGGCCACGCCCGGGAAGGAGAAGCACAGTGAGCACAGGGCTG
ATGGCCGGAGGGAGCAGGCTTCAGTGGCTCAGCCCACAGCCAACCCGCCTGCGGGCTCCTCGAC
CAAGGGGCTCGCCGCCAGCCACCAGCCTCCCCCTTCACATCGCTCGGCTCAGGATTCACGGAAA
CAGGTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCA
AAAAGATCCGAGAAGTCAGACCGTCACCATCCAAAACTGTGAAGTACACTGCCACAGTGACCAA
GGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCCAGCCACCAC
AAACCCAGTTCAGCCGTCAACCACACAATCTCAGGGAAAAGTGAAAGTAGCAATGCAAAAACCC
GCAAACAGGTGCTATCCCTCGGGGGGGCGTCCACGTCCACCGCGCCGGCTGCCAGCGGCCTCAA
GGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGCTGAGGGAG
GGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAGGTGGATAAGCAGCAGTCACCCC
CCAAGAAGATGAAGGGGACAGCAGGCATTGCTGAAGCCCCTGGCAGAAAGGCCTCGGCGGCTTC
AGGAGAGAAGTCTCTGCTGAACGGACACGTGAAGAAGGAAGTGCCCGAGCGGAGTTTGGAAAGG
AATCGGCCAAAACGGGCCGCAGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGTCAG
AGGGCACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCACGACCC
GCAGGGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTC
CTCAGGCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTCCGTGCTCAGG
TGGAGAAGTACGGGATGTGTCGCGTGATCCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAA
CGACGAGATGCGCTTTGTCACGCAGATCCAGCACATCCACAAGCTGGGCCGGCGCTGGGGCCCC
AATGTACAGCGGCTTGCCTGTATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAAC
TCCCCCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGG
CGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATCCCC
AAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATG
ACTCCTTGTCCCCCGAGGAGCACCGACGACTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCT
AGAAAAGCGCAAAGGGCCATTAGAGGGGCACACAGAGAACGACCACCACAAGTTCCACTCCCTG
CCCCGCTTTGAGCCCAAGAATGGGCTCATCCATGGTGTTACACCCAGGAATGGCTTCCGTAGCA
AGCTCAAGGAGGTGGGCCGGGCACCACTCAAGACAGGCCGGCGGCGACTGTTCGCTCAGGAAAA
AGAAGTGGTCAAAGAGGAAGAAGAAGACAAAGGTGTCCTCGATGACTTCTACAAGTGCATCTAC
AAGGGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGCT
TCAGCAAGGAGCCCGCACCAGCAGAGATCGAGCAAGAGTACTGGAGGTTAGTGGAAGAGAAGGA
CTGTCATGTGGCCGTTCACTGTGGAAAGGTGGACACTAATACCCATGGCAGCGGGTTCCCGGTG
GGGAAATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTTCTCCCCAATAACACAGGGT
CCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAAATATTGGCATGGT
CTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATCGACTACTTACACACT
GGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAAGATGTGGTCC
ACACCCTGTTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATGATCTC
CCCAGAGGTGCTGTGCAAGGAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGCGGGCAGTTC
GTTGTCTGCTTTCCTGGATCCTTTGTGTCTAAAGTGTGCTGTGGTTACAACGTCTCTGAGACTG
TGCACTTTGCTACTACCCAGTGGACGAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCG
CCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCGAAA
AAGGAAAATGGCCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTCAGGGACACAGAGC
TGCGGCAGCGCAGGCAGCTGTTTGAGGCCGGCCTTCATTCTTCCGCACGCTATGGCAGCCATGA
CGGCAGCAGCGCAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTGGCTGCAGCTGGAGACTTCA
GAGAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCGATGGTGGTACAGGAGAATGAGA
ACGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAAAAACAGAAGTCTTGCCGTGGGCT
GAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCAAA
GTGTCTGGCAAACACGGTGGCATTGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCC
GCAAGAGAGCGACTGTGGATGTGCCGCCATCTCGGCTCCCGTCCTCATGAAGATGCTGAACCCA
CGGTCACTCACTTCTATATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGAT
ACAAGCTGTCTTTGCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTT
TTAGCATTAAACTGTTGAAGTTTTGTACGTAGACACCTAGGTCCTGCAGTCAGGTTGGAAGCTG
CGTGCACTCACTGTCTAAACCCTTGAGGGCTGGATTGATTTGTGTCGCCCCACGGCTGAGAAAA
GCCTTTTTTGTTTGTTTTTGTTTTGTTTTGGTAACTGTTAAAGAATAAAGGCTTTTTAACCCAT
TTTTGAAGAGGGTGAAGTTTGGAGAACAAGTTTTAAAACCATCAGTCAGATGAGATTTTTTCTA
GTTTGGAAAAGGGATAGAGGACTCTCACACACACACACACACACACACACACACACACACACAC
GAAAACTTGAAATGGCTTTTTTTGGCTGTCTTTTCTTCTGACATTGCGAGGGGAGTTTGTAACT
TTGAGCCCCGTTTGTTTGGCTGGGCGGCTATGGCAGCTGAAGCGAAATGTGAGGTTTGAGTGAC
GAGGTTCTCACACCAGCACATCACTATGCATCCGCTCGAGGAAGAGAGAGGACAAAGACTGCCT
GCCTTGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTT
TTTTTTTTTTGGTGCTGTTGGCTACTTTATCAAAAACAAAAAACCCTTCGATAGCATCCTTGAG
GAAAGAGGAAAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCACGTGCAATCTCCTGACAT
CCCACCTCCATCTCTGCTCGTGTCCCTCACACATCAGCATTAATCTCTGTTTCCCACACTTGGC
CACTAAGTCTGCAGTTGTTTTGAATGTGAAGACACATCTGTGCTCATCCTGTCTGTTTTTTCTC
TTCATGTTTTAACAAAAAAGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600710 ⟹ XP_017456199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,162,568 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,956,496 (-)	NCBI
Rnor_6.0	17	20,183,440 - 20,364,717 (-)	NCBI

Sequence:

show sequence

CACGCTGGGAATTGTAGTTCTTAGCTTCCGTGGCCATAGCCATTTTGTAGTCAAGGGACTACAA
CTTCCAGAAGATCAAGGGGACTATTCTAAGGTGCCCCGGGAATAGGCGGCTCTCCCCCGGGCCG
GGCGTCCTGGGGCAGTGGTACCCTGCTGCCCGGCTGCAGGCGAATCTGGCTTTGGGGGAAGAGG
AAGAAAAGTCGGATTACAAGATCAACCACCACCACCAACAATAAAAACCACCAGGATATTTTTT
TGCAAATTTCTGACGGCTTTAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGAT
CTCAGAATGAGCAAGGAAAGACCCAAGAGGAATATCATTCAGAAGAAATACGACGACAGTGATG
GGATCCCGTGGTCAGAAGAGAGAGTCGTTCGGAAAGTCCTTTATTTGTCTCTAAAGGAATTCAA
GAATGCACAGAAAAGGCAGCATGGGGAAGGCATTGCTGGGAGCCTGAAAACAGTGAATGGGCTC
CTTGGTAATGACCAGTCTAAGGCATTAGGACCAGCTTCAGAGCAGTCAGAGAATGAGAAGGATG
ATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTC
GAGGAAAAGGCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAGTCTCAGCCGAACAGTCCCAGC
ACAACTCCAGTGAAGACAGTGGAGCCTTTGCTGCCCCCGCCAGCTACTCACATTTCTGACCTCT
CTAAAAGGAAGCCTAAGACAGAGGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCT
GCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAGGAGGAAGATGAT
GAGACAGAAGATGTCAAAACAGCCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGA
AAGGAAAATCCCATAAGCATGTACACAACGGGCATGTTTTCAATGGCTCCAACAGGTCAGCACG
GGAGAAGGAACCTGCTCAGAAACACAGAGGCAGAGAGGCCACGCCCGGGAAGGAGAAGCACAGT
GAGCACAGGGCTGATGGCCGGAGGGAGCAGGCTTCAGTGGCTCAGCCCACAGCCAACCCGCCTG
CGGGCTCCTCGACCAAGGGGCTCGCCGCCAGCCACCAGCCTCCCCCTTCACATCGCTCGGCTCA
GGATTCACGGAAACAGGTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGT
ACAAACAGTGCCAAAAAGATCCGAGAAGTCAGACCGTCACCATCCAAAACTGTGAAGTACACTG
CCACAGTGACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAA
ACCCAGCCACCACAAACCCAGTTCAGCCGTCAACCACACAATCTCAGGGAAAAGTGAAAGTAGC
AATGCAAAAACCCGCAAACAGGTGCTATCCCTCGGGGGGGCGTCCACGTCCACCGCGCCGGCTG
CCAGCGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCG
GCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAGGTGGATAAG
CAGCAGTCACCCCCCAAGAAGATGAAGGGGACAGCAGGCATTGCTGAAGCCCCTGGCAGAAAGG
CCTCGGCGGCTTCAGGAGAGAAGTCTCTGCTGAACGGACACGTGAAGAAGGAAGTGCCCGAGCG
GAGTTTGGAAAGGAATCGGCCAAAACGGGCCGCAGCTGGCAAGAATATGCTGGGCAAACAAGCA
CATGGCAAGTCAGAGGGCACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACA
AGCCGCACGACCCGCAGGGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGA
CGAGATCCCTGTCCTCAGGCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCA
GTCCGTGCTCAGGTGGAGAAGTACGGGATGTGTCGCGTGATCCCCCCTCCAGACTGGCGGCCAG
AGTGCAAGCTCAACGACGAGATGCGCTTTGTCACGCAGATCCAGCACATCCACAAGCTGGGCCG
GCGCTGGGGCCCCAATGTACAGCGGCTTGCCTGTATAAAGAAGCACCTCAGATCTCAGGGCATC
ACCATGGATGAACTCCCCCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGA
TTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACAT
GCTGCGCATCCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTAC
CTGCTTTCCTATGACTCCTTGTCCCCCGAGGAGCACCGACGACTGGAGAAGGAGGTGCTGATGG
AGAAGGAGATCCTAGAAAAGCGCAAAGGGCCATTAGAGGGGCACACAGAGAACGACCACCACAA
GTTCCACTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTCATCCATGGTGTTACACCCAGGAAT
GGCTTCCGTAGCAAGCTCAAGGAGGTGGGCCGGGCACCACTCAAGACAGGCCGGCGGCGACTGT
TCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAAGAAGAAGACAAAGGTGTCCTCGATGACTTCTA
CAAGTGCATCTACAAGGGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATC
ATGAACATGTGCTTCAGCAAGGAGCCCGCACCAGCAGAGATCGAGCAAGAGTACTGGAGGTTAG
TGGAAGAGAAGGACTGTCATGTGGCCGTTCACTGTGGAAAGGTGGACACTAATACCCATGGCAG
CGGGTTCCCGGTGGGGAAATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTTCTCCCC
AATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAA
ATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATCGA
CTACTTACACACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTG
GAAGATGTGGTCCACACCCTGTTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCA
ATGTAATGATCTCCCCAGAGGTGCTGTGCAAGGAGGGGATCAAGGTCCACAGGACTGTACAGCA
GAGCGGGCAGTTCGTTGTCTGCTTTCCTGGATCCTTTGTGTCTAAAGTGTGCTGTGGTTACAAC
GTCTCTGAGACTGTGCACTTTGCTACTACCCAGTGGACGAGCATGGGCTTCGAGACTGCCAAGG
AGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACA
AGCAGAAGCGAAAAAGGAAAATGGCCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTC
AGGGACACAGAGCTGCGGCAGCGCAGGCAGCTGTTTGAGGCCGGCCTTCATTCTTCCGCACGCT
ATGGCAGCCATGACGGCAGCAGCGCAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTGGCTGCA
GCTGGAGACTTCAGAGAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCGATGGTGGTA
CAGGAGAATGAGAACGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAAAAACAGAAGT
CTTGCCGTGGGCTGAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCA
GATATGTGGCAAAGTGTCTGGCAAACACGGTGGCATTGAGAACTGTCTCAACAAACCCACACCA
AAAAGAGGTCCCCGCAAGAGAGCGACTGTGGATGTGCCGCCATCTCGGCTCCCGTCCTCATGAA
GATGCTGAACCCACGGTCACTCACTTCTATATTTTTTGTAATTACTATATTCTAGTTTGGAGTA
CTTGCTGTAGGATACAAGCTGTCTTTGCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGAG
AACTGATTTTGTTTTAGCATTAAACTGTTGAAGTTTTGTACGTAGACACCTAGGTCCTGCAGTC
AGGTTGGAAGCTGCGTGCACTCACTGTCTAAACCCTTGAGGGCTGGATTGATTTGTGTCGCCCC
ACGGCTGAGAAAAGCCTTTTTTGTTTGTTTTTGTTTTGTTTTGGTAACTGTTAAAGAATAAAGG
CTTTTTAACCCATTTTTGAAGAGGGTGAAGTTTGGAGAACAAGTTTTAAAACCATCAGTCAGAT
GAGATTTTTTCTAGTTTGGAAAAGGGATAGAGGACTCTCACACACACACACACACACACACACA
CACACACACACACGAAAACTTGAAATGGCTTTTTTTGGCTGTCTTTTCTTCTGACATTGCGAGG
GGAGTTTGTAACTTTGAGCCCCGTTTGTTTGGCTGGGCGGCTATGGCAGCTGAAGCGAAATGTG
AGGTTTGAGTGACGAGGTTCTCACACCAGCACATCACTATGCATCCGCTCGAGGAAGAGAGAGG
ACAAAGACTGCCTGCCTTGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGGAAATCC
ATTCTGTTATTTTTTTTTTTTTTGGTGCTGTTGGCTACTTTATCAAAAACAAAAAACCCTTCGA
TAGCATCCTTGAGGAAAGAGGAAAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCACGTGC
AATCTCCTGACATCCCACCTCCATCTCTGCTCGTGTCCCTCACACATCAGCATTAATCTCTGTT
TCCCACACTTGGCCACTAAGTCTGCAGTTGTTTTGAATGTGAAGACACATCTGTGCTCATCCTG
TCTGTTTTTTCTCTTCATGTTTTAACAAAAAAGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600711 ⟹ XP_017456200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,159,450 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,953,367 (-)	NCBI
Rnor_6.0	17	20,183,440 - 20,278,256 (-)	NCBI

Sequence:

show sequence

TCTAAAGGAATTCAAGAATGCACAGAAAAGGCAGCATGGGGAAGGCATTGCTGGGAGCCTGAAA
ACAGTGAATGGCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAGTCTCAGCCGAACAGTCCCAG
CACAACTCCAGTGAAGACAGTGGAGCCTTTGCTGCCCCCGCCAGCTACTCACATTTCTGACCTC
TCTAAAAGGAAGCCTAAGACAGAGGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGC
TGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAGGAGGAAGATGA
TGAGACAGAAGATGTCAAAACAGCCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGG
AAAGGAAAATCCCATAAGCATGTACACAACGGGCATGTTTTCAATGGCTCCAACAGGTCAGCAC
GGGAGAAGGAACCTGCTCAGAAACACAGAGGCAGAGAGGCCACGCCCGGGAAGGAGAAGCACAG
TGAGCACAGGGCTGATGGCCGGAGGGAGCAGGCTTCAGTGGCTCAGCCCACAGCCAACCCGCCT
GCGGGCTCCTCGACCAAGGGGCTCGCCGCCAGCCACCAGCCTCCCCCTTCACATCGCTCGGCTC
AGGATTCACGGAAACAGGTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGG
TACAAACAGTGCCAAAAAGATCCGAGAAGTCAGACCGTCACCATCCAAAACTGTGAAGTACACT
GCCACAGTGACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCA
AACCCAGCCACCACAAACCCAGTTCAGCCGTCAACCACACAATCTCAGGGAAAAGTGAAAGTAG
CAATGCAAAAACCCGCAAACAGGTGCTATCCCTCGGGGGGGCGTCCACGTCCACCGCGCCGGCT
GCCAGCGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGC
GGCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAGGTGGATAA
GCAGCAGTCACCCCCCAAGAAGATGAAGGGGACAGCAGGCATTGCTGAAGCCCCTGGCAGAAAG
GCCTCGGCGGCTTCAGGAGAGAAGTCTCTGCTGAACGGACACGTGAAGAAGGAAGTGCCCGAGC
GGAGTTTGGAAAGGAATCGGCCAAAACGGGCCGCAGCTGGCAAGAATATGCTGGGCAAACAAGC
ACATGGCAAGTCAGAGGGCACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCAC
AAGCCGCACGACCCGCAGGGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGG
ACGAGATCCCTGTCCTCAGGCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTC
AGTCCGTGCTCAGGTGGAGAAGTACGGGATGTGTCGCGTGATCCCCCCTCCAGACTGGCGGCCA
GAGTGCAAGCTCAACGACGAGATGCGCTTTGTCACGCAGATCCAGCACATCCACAAGCTGGGCC
GGCGCTGGGGCCCCAATGTACAGCGGCTTGCCTGTATAAAGAAGCACCTCAGATCTCAGGGCAT
CACCATGGATGAACTCCCCCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTG
ATTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACA
TGCTGCGCATCCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTA
CCTGCTTTCCTATGACTCCTTGTCCCCCGAGGAGCACCGACGACTGGAGAAGGAGGTGCTGATG
GAGAAGGAGATCCTAGAAAAGCGCAAAGGGCCATTAGAGGGGCACACAGAGAACGACCACCACA
AGTTCCACTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTCATCCATGGTGTTACACCCAGGAA
TGGCTTCCGTAGCAAGCTCAAGGAGGTGGGCCGGGCACCACTCAAGACAGGCCGGCGGCGACTG
TTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAAGAAGAAGACAAAGGTGTCCTCGATGACTTCT
ACAAGTGCATCTACAAGGGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACAT
CATGAACATGTGCTTCAGCAAGGAGCCCGCACCAGCAGAGATCGAGCAAGAGTACTGGAGGTTA
GTGGAAGAGAAGGACTGTCATGTGGCCGTTCACTGTGGAAAGGTGGACACTAATACCCATGGCA
GCGGGTTCCCGGTGGGGAAATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTTCTCCC
CAATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTA
AATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATCG
ACTACTTACACACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCT
GGAAGATGTGGTCCACACCCTGTTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGC
AATGTAATGATCTCCCCAGAGGTGCTGTGCAAGGAGGGGATCAAGGTCCACAGGACTGTACAGC
AGAGCGGGCAGTTCGTTGTCTGCTTTCCTGGATCCTTTGTGTCTAAAGTGTGCTGTGGTTACAA
CGTCTCTGAGACTGTGCACTTTGCTACTACCCAGTGGACGAGCATGGGCTTCGAGACTGCCAAG
GAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCAC
AAGCAGAAGCGAAAAAGGAAAATGGCCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCT
CAGGGACACAGAGCTGCGGCAGCGCAGGCAGCTGTTTGAGGCCGGCCTTCATTCTTCCGCACGC
TATGGCAGCCATGACGGCAGCAGCGCAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTGGCTGC
AGCTGGAGACTTCAGAGAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCGATGGTGGT
ACAGGAGAATGAGAACGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAAAAACAGAAG
TCTTGCCGTGGGCTGAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACC
AGATATGTGGCAAAGTGTCTGGCAAACACGGTGGCATTGAGAACTGTCTCAACAAACCCACACC
AAAAAGAGGTCCCCGCAAGAGAGCGACTGTGGATGTGCCGCCATCTCGGCTCCCGTCCTCATGA
AGATGCTGAACCCACGGTCACTCACTTCTATATTTTTTGTAATTACTATATTCTAGTTTGGAGT
ACTTGCTGTAGGATACAAGCTGTCTTTGCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGA
GAACTGATTTTGTTTTAGCATTAAACTGTTGAAGTTTTGTACGTAGACACCTAGGTCCTGCAGT
CAGGTTGGAAGCTGCGTGCACTCACTGTCTAAACCCTTGAGGGCTGGATTGATTTGTGTCGCCC
CACGGCTGAGAAAAGCCTTTTTTGTTTGTTTTTGTTTTGTTTTGGTAACTGTTAAAGAATAAAG
GCTTTTTAACCCATTTTTGAAGAGGGTGAAGTTTGGAGAACAAGTTTTAAAACCATCAGTCAGA
TGAGATTTTTTCTAGTTTGGAAAAGGGATAGAGGACTCTCACACACACACACACACACACACAC
ACACACACACACACGAAAACTTGAAATGGCTTTTTTTGGCTGTCTTTTCTTCTGACATTGCGAG
GGGAGTTTGTAACTTTGAGCCCCGTTTGTTTGGCTGGGCGGCTATGGCAGCTGAAGCGAAATGT
GAGGTTTGAGTGACGAGGTTCTCACACCAGCACATCACTATGCATCCGCTCGAGGAAGAGAGAG
GACAAAGACTGCCTGCCTTGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGGAAATC
CATTCTGTTATTTTTTTTTTTTTTGGTGCTGTTGGCTACTTTATCAAAAACAAAAAACCCTTCG
ATAGCATCCTTGAGGAAAGAGGAAAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCACGTG
CAATCTCCTGACATCCCACCTCCATCTCTGCTCGTGTCCCTCACACATCAGCATTAATCTCTGT
TTCCCACACTTGGCCACTAAGTCTGCAGTTGTTTTGAATGTGAAGACACATCTGTGCTCATCCT
GTCTGTTTTTTCTCTTCATGTTTTAACAAAAAAGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039096472 ⟹ XP_038952400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,159,635 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,953,574 (-)	NCBI

RefSeq Acc Id:

XM_039096474 ⟹ XP_038952402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,163,598 (-)	NCBI
mRatBN7.2	17	19,777,487 - 19,957,696 (-)	NCBI

RefSeq Acc Id:

XM_063276746 ⟹ XP_063132816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,159,450 (-)	NCBI

RefSeq Acc Id:

XM_063276747 ⟹ XP_063132817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	19,983,217 - 20,159,870 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414176	(Get FASTA)	NCBI Sequence Viewer
	XP_017456196	(Get FASTA)	NCBI Sequence Viewer
	XP_017456197	(Get FASTA)	NCBI Sequence Viewer
	XP_017456198	(Get FASTA)	NCBI Sequence Viewer
	XP_017456199	(Get FASTA)	NCBI Sequence Viewer
	XP_017456200	(Get FASTA)	NCBI Sequence Viewer
	XP_038952400	(Get FASTA)	NCBI Sequence Viewer
	XP_038952402	(Get FASTA)	NCBI Sequence Viewer
	XP_063132816	(Get FASTA)	NCBI Sequence Viewer
	XP_063132817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98179	(Get FASTA)	NCBI Sequence Viewer
	EDL98180	(Get FASTA)	NCBI Sequence Viewer
	EDL98181	(Get FASTA)	NCBI Sequence Viewer
	EDL98182	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067055
	ENSRNOP00000067055.1
	ENSRNOP00000100119
	ENSRNOP00000100119.1
	ENSRNOP00000112380
	ENSRNOP00000112380.1

RefSeq Acc Id:	XP_017456198 ⟸ XM_017600709
- Peptide Label:	isoform X3
- UniProtKB:	M0RBV7 (UniProtKB/TrEMBL), A6J730 (UniProtKB/TrEMBL), A6J731 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGIAGSLKTVNGLLG NDQSKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTT PVKTVEPLLPPPATHISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDET EDVKTATNNASSSCQSTPRKGKSHKHVHNGHVFNGSNRSAREKEPAQKHRGREATPGKEKHSEH RADGRREQASVAQPTANPPAGSSTKGLAASHQPPPSHRSAQDSRKQVSKVNGVTRMSSLGAGTN SAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPSHHKPSSAVNHTISGKSESSNA KTRKQVLSLGGASTSTAPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKQQ SPPKKMKGTAGIAEAPGRKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHG KSEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVR AQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITM DELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL SYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTENDHHKFHSLPRFEPKNGLIHGVTPRNGF RSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLDDFYKCIYKGRSVSLTTFYRTARNIMN MCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNN TGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED VVHTLLQGNGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVS ETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRD TELRQRRQLFEAGLHSSARYGSHDGSSAVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQE NENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKR GPRKRATVDVPPSRLPSS hide sequence

RefSeq Acc Id:	XP_017456199 ⟸ XM_017600710
- Peptide Label:	isoform X3
- UniProtKB:	M0RBV7 (UniProtKB/TrEMBL), A6J730 (UniProtKB/TrEMBL), A6J731 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGIAGSLKTVNGLLG NDQSKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTT PVKTVEPLLPPPATHISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDET EDVKTATNNASSSCQSTPRKGKSHKHVHNGHVFNGSNRSAREKEPAQKHRGREATPGKEKHSEH RADGRREQASVAQPTANPPAGSSTKGLAASHQPPPSHRSAQDSRKQVSKVNGVTRMSSLGAGTN SAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPSHHKPSSAVNHTISGKSESSNA KTRKQVLSLGGASTSTAPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKQQ SPPKKMKGTAGIAEAPGRKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHG KSEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVR AQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITM DELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL SYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTENDHHKFHSLPRFEPKNGLIHGVTPRNGF RSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLDDFYKCIYKGRSVSLTTFYRTARNIMN MCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNN TGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED VVHTLLQGNGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVS ETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRD TELRQRRQLFEAGLHSSARYGSHDGSSAVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQE NENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKR GPRKRATVDVPPSRLPSS hide sequence

RefSeq Acc Id:	XP_017456197 ⟸ XM_017600708
- Peptide Label:	isoform X3
- UniProtKB:	M0RBV7 (UniProtKB/TrEMBL), A6J730 (UniProtKB/TrEMBL), A6J731 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGIAGSLKTVNGLLG NDQSKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTT PVKTVEPLLPPPATHISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDET EDVKTATNNASSSCQSTPRKGKSHKHVHNGHVFNGSNRSAREKEPAQKHRGREATPGKEKHSEH RADGRREQASVAQPTANPPAGSSTKGLAASHQPPPSHRSAQDSRKQVSKVNGVTRMSSLGAGTN SAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPSHHKPSSAVNHTISGKSESSNA KTRKQVLSLGGASTSTAPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKQQ SPPKKMKGTAGIAEAPGRKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHG KSEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVR AQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITM DELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL SYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTENDHHKFHSLPRFEPKNGLIHGVTPRNGF RSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLDDFYKCIYKGRSVSLTTFYRTARNIMN MCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNN TGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED VVHTLLQGNGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVS ETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRD TELRQRRQLFEAGLHSSARYGSHDGSSAVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQE NENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKR GPRKRATVDVPPSRLPSS hide sequence

RefSeq Acc Id:	XP_017456200 ⟸ XM_017600711
- Peptide Label:	isoform X4
- UniProtKB:	A6J732 (UniProtKB/TrEMBL), A6J731 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYFGSSQDEEDVEEEDDETEDVKTATNNASSSCQSTPRKGKSHKHVHNGHVFNGSNRSAREKE PAQKHRGREATPGKEKHSEHRADGRREQASVAQPTANPPAGSSTKGLAASHQPPPSHRSAQDSR KQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPSH HKPSSAVNHTISGKSESSNAKTRKQVLSLGGASTSTAPAASGLKASSRLNPKSCTKEVGGRQLR EGLRNSKRRLEEAQQVDKQQSPPKKMKGTAGIAEAPGRKASAASGEKSLLNGHVKKEVPERSLE RNRPKRAAAGKNMLGKQAHGKSEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIP VLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWG PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRI PKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTENDHHKFHS LPRFEPKNGLIHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLDDFYKCI YKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFP VGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLH TGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQ FVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA KKENGPTLSTISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSSAVADGKKKPRKWLQLET SERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICG KVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS hide sequence

RefSeq Acc Id:	XP_017456196 ⟸ XM_017600707
- Peptide Label:	isoform X1
- UniProtKB:	A6J731 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPPFSVQFSCRHINNLLSDCLPSPSAPAGVRLSYCLAESALPLAYYVLGRIVDKCSGACLTAF SLPPSPPLSFFLCLCNDPALRMAAPRVCQVQFLVAYLEEPGIEGLLGNDQSKALGPASEQSENE KDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKTVEPLLPPPATHIS DLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKTATNNASSSCQST PRKGKSHKHVHNGHVFNGSNRSAREKEPAQKHRGREATPGKEKHSEHRADGRREQASVAQPTAN PPAGSSTKGLAASHQPPPSHRSAQDSRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVK YTATVTKGTVTYTKAKRELVKETKPSHHKPSSAVNHTISGKSESSNAKTRKQVLSLGGASTSTA PAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKQQSPPKKMKGTAGIAEAPG RKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKSEGTPCENRSTSQPES SHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDW RPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFF RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEV LMEKEILEKRKGPLEGHTENDHHKFHSLPRFEPKNGLIHGVTPRNGFRSKLKEVGRAPLKTGRR RLFAQEKEVVKEEEEDKGVLDDFYKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYW RLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIP WLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQML ESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFET AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAGLHSS ARYGSHDGSSAVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEK QKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPS S hide sequence

Ensembl Acc Id:

ENSRNOP00000067055 ⟸ ENSRNOT00000070962

RefSeq Acc Id:	XP_038952402 ⟸ XM_039096474
- Peptide Label:	isoform X3
- UniProtKB:	M0RBV7 (UniProtKB/TrEMBL), A6J730 (UniProtKB/TrEMBL), A6J731 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952400 ⟸ XM_039096472
- Peptide Label:	isoform X2
- UniProtKB:	A6J731 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414176 ⟸ NM_001427247
- UniProtKB:	A6J731 (UniProtKB/TrEMBL), A6J730 (UniProtKB/TrEMBL), M0RBV7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132817 ⟸ XM_063276747
- Peptide Label:	isoform X4
- UniProtKB:	A6J731 (UniProtKB/TrEMBL), A6J732 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132816 ⟸ XM_063276746
- Peptide Label:	isoform X4
- UniProtKB:	A6J731 (UniProtKB/TrEMBL), A6J732 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100119 ⟸ ENSRNOT00000122788

Ensembl Acc Id:

ENSRNOP00000112380 ⟸ ENSRNOT00000128989

Protein Domains

ARID JmjC JmjN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RBV7-F1-model_v2	AlphaFold	M0RBV7	1-1234	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591663	AgrOrtholog
BioCyc Gene	G2FUF-9847	BioCyc
Ensembl Genes	ENSRNOG00000045918	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000070962	ENTREZGENE
	ENSRNOT00000070962.5	UniProtKB/TrEMBL
	ENSRNOT00000122788	ENTREZGENE
	ENSRNOT00000122788.1	UniProtKB/TrEMBL
	ENSRNOT00000128989	ENTREZGENE
	ENSRNOT00000128989.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.60	UniProtKB/TrEMBL
	Cupin	UniProtKB/TrEMBL
InterPro	ARID/BRIGHT_DNA-bd	UniProtKB/TrEMBL
	ARID_dom_sf	UniProtKB/TrEMBL
	JmjC_dom	UniProtKB/TrEMBL
	TF_JmjN	UniProtKB/TrEMBL
	Znf_C5HC2	UniProtKB/TrEMBL
NCBI Gene	681740	ENTREZGENE
PANTHER	LYSINE-SPECIFIC DEMETHYLASE	UniProtKB/TrEMBL
	PROTEIN JUMONJI	UniProtKB/TrEMBL
Pfam	ARID	UniProtKB/TrEMBL
	JmjC	UniProtKB/TrEMBL
	JmjN	UniProtKB/TrEMBL
	zf-C5HC2	UniProtKB/TrEMBL
PhenoGen	Jarid2	PhenoGen
PROSITE	ARID	UniProtKB/TrEMBL
	JMJC	UniProtKB/TrEMBL
	JMJN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000045918	RatGTEx
SMART	ARID	UniProtKB/TrEMBL
	BRIGHT	UniProtKB/TrEMBL
	JmjC	UniProtKB/TrEMBL
	JmjN	UniProtKB/TrEMBL
Superfamily-SCOP	ARID	UniProtKB/TrEMBL
	Clavaminate synthase-like	UniProtKB/TrEMBL
UniProt	A0ABK0LGY6_RAT	UniProtKB/TrEMBL
	A0ABK0M8H5_RAT	UniProtKB/TrEMBL
	A6J730	ENTREZGENE, UniProtKB/TrEMBL
	A6J731	ENTREZGENE, UniProtKB/TrEMBL
	A6J732	ENTREZGENE, UniProtKB/TrEMBL
	M0RBV7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Jarid2	jumonji and AT-rich interaction domain containing 2	Jarid2	jumonji, AT rich interactive domain 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-09	Jarid2	jumonji, AT rich interactive domain 2	LOC681740	similar to jumonji protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC681740	similar to jumonji protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations