Rarg (retinoic acid receptor, gamma) - Rat Genome Database

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Gene: Rarg (retinoic acid receptor, gamma) Rattus norvegicus
Analyze
Symbol: Rarg
Name: retinoic acid receptor, gamma
RGD ID: 1583230
Description: Enables nuclear receptor activity. Involved in several processes, including cellular response to retinoic acid; regulation of myelination; and retinoic acid receptor signaling pathway. Predicted to be located in chromatin. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human RARG (retinoic acid receptor gamma); PARTICIPATES IN retinoic acid signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC685072; retinoic acid receptor gamma; similar to Retinoic acid receptor gamma-A (RAR-gamma-A)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,246,427 - 135,268,889 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7135,246,427 - 135,268,889 (-)EnsemblGRCr8
mRatBN7.27133,367,833 - 133,390,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,367,833 - 133,390,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7135,129,112 - 135,151,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,358,476 - 137,380,666 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,343,604 - 137,365,726 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,840,739 - 143,863,206 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,839,980 - 143,863,186 (-)Ensemblrn6Rnor6.0
Rnor_5.07141,637,841 - 141,660,460 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,991,447 - 141,014,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7129,801,582 - 129,823,782 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-naphthylamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
adapalene  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-4-hydroxyretinoic acid  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
aristolochic acid A  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
carotenoid  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cyclophosphamide  (EXP)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
endrin  (ISO)
enilconazole  (ISO)
ethanol  (ISO)
ezetimibe  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
griseofulvin  (ISO)
GSK-J4  (ISO)
isotretinoin  (EXP)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP,ISO)
mifepristone  (ISO)
nicotine  (ISO)
orphenadrine  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
phenytoin  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quinomethionate  (ISO)
Ro 41-5253  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tazarotene  (ISO)
tazarotenic acid  (ISO)
testosterone  (EXP)
thiazoles  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
tributylstannane  (EXP,ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (ISO)
bone development  (IEA,ISO)
bone morphogenesis  (ISO)
camera-type eye development  (IEA,ISO)
cell differentiation  (IBA)
cellular response to leukemia inhibitory factor  (ISO)
cellular response to retinoic acid  (IEP,ISO)
chondrocyte development  (IEA,ISO)
DNA-templated transcription  (IEA)
embryonic camera-type eye development  (ISO)
embryonic eye morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic morphogenesis  (IEA)
embryonic organ development  (IEA)
epithelium development  (ISO)
face development  (ISO)
gland development  (ISO)
glandular epithelial cell development  (IEA,ISO)
growth plate cartilage chondrocyte growth  (IEA,ISO)
growth plate cartilage development  (IEA,ISO)
Harderian gland development  (ISO)
limb development  (IEA,ISO)
multicellular organism growth  (IEA,ISO)
negative regulation of apoptotic process  (IEA,ISO)
negative regulation of cartilage development  (IEA,ISO)
negative regulation of cell differentiation  (IEA,ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of chondrocyte differentiation  (ISO)
negative regulation of transcription by RNA polymerase II  (IBA,IEA,ISO)
neural tube closure  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of cell population proliferation  (IEA,IMP,ISO)
positive regulation of gene expression  (ISO)
positive regulation of programmed cell death  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IEA,ISO)
prostate gland epithelium morphogenesis  (ISO)
regulation of DNA-templated transcription  (IEA)
regulation of gene expression  (ISO)
regulation of myelination  (IDA)
regulation of myeloid cell differentiation  (ISO)
reproductive structure development  (ISO)
response to retinoic acid  (IEA,ISO)
retina development in camera-type eye  (ISO)
retinal pigment epithelium development  (ISO)
retinoic acid receptor signaling pathway  (IBA,IEA,IMP,ISO)
trachea cartilage development  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Activation of retinoic acid receptor gamma induces proliferation of immortalized hippocampal progenitor cells. Chung JJ, etal., Brain Res Mol Brain Res 2000 Nov 10;83(1-2):52-62.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. International Union of Pharmacology. LX. Retinoic acid receptors. Germain P, etal., Pharmacol Rev. 2006 Dec;58(4):712-25.
4. Retinoic acid regulates myelin formation in the peripheral nervous system. Latasa MJ, etal., Glia. 2010 Sep;58(12):1451-64.
5. Vitamin A regulation of gene expression: molecular mechanism of a prototype gene. McGrane MM J Nutr Biochem. 2007 Aug;18(8):497-508. Epub 2007 Feb 22.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.
Additional References at PubMed
PMID:1655807   PMID:2157970   PMID:7607067   PMID:7720676   PMID:8152920   PMID:8388780   PMID:8681798   PMID:9376317   PMID:10075839   PMID:10684250   PMID:11784046   PMID:12186877  
PMID:12193579   PMID:15327771   PMID:15734736   PMID:15766748   PMID:16207763   PMID:17943189   PMID:18439490   PMID:18845237   PMID:19389355   PMID:20201933   PMID:20439489   PMID:21131358  
PMID:23136256   PMID:23327965  


Genomics

Comparative Map Data
Rarg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,246,427 - 135,268,889 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7135,246,427 - 135,268,889 (-)EnsemblGRCr8
mRatBN7.27133,367,833 - 133,390,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,367,833 - 133,390,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7135,129,112 - 135,151,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,358,476 - 137,380,666 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,343,604 - 137,365,726 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,840,739 - 143,863,206 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,839,980 - 143,863,186 (-)Ensemblrn6Rnor6.0
Rnor_5.07141,637,841 - 141,660,460 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,991,447 - 141,014,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7129,801,582 - 129,823,782 (-)NCBICelera
Cytogenetic Map7q36NCBI
RARG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,210,569 - 53,232,209 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,210,566 - 53,232,980 (-)Ensemblhg38GRCh38
GRCh371253,604,353 - 53,625,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,890,620 - 51,912,303 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341251,890,620 - 51,912,247NCBI
Celera1253,252,956 - 53,274,263 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,646,458 - 50,668,146 (-)NCBIHuRef
CHM1_11253,570,785 - 53,592,447 (-)NCBICHM1_1
T2T-CHM13v2.01253,176,168 - 53,197,803 (-)NCBIT2T-CHM13v2.0
Rarg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,143,373 - 102,165,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,143,373 - 102,165,952 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3815102,234,938 - 102,257,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,234,938 - 102,257,517 (-)Ensemblmm10GRCm38
MGSCv3715102,065,371 - 102,087,914 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615102,062,974 - 102,085,313 (-)NCBIMGSCv36mm8
Celera15104,391,902 - 104,414,975 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.4NCBI
Rarg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458480,070 - 501,356 (-)Ensembl
ChiLan1.0NW_004955458480,257 - 501,172 (-)NCBIChiLan1.0ChiLan1.0
RARG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,953,035 - 40,975,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,950,506 - 40,972,122 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,521,276 - 35,542,814 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11236,303,328 - 36,325,111 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,303,359 - 36,325,111 (+)EnsemblpanPan2panpan1.1
RARG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,958,432 - 1,978,471 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,958,204 - 1,978,476 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2744,271,142 - 44,291,835 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0271,961,941 - 1,982,664 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,962,558 - 1,982,661 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,980,967 - 2,000,875 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,965,173 - 1,985,840 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,671,821 - 44,692,522 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rarg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,640,418 - 62,661,874 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,500,622 - 10,524,824 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,502,954 - 10,524,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,436,270 - 18,458,624 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1518,436,267 - 18,458,625 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,869,535 - 18,878,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RARG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,319,104 - 49,340,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,319,839 - 49,328,656 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037196,719,056 - 196,740,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rarg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249041,255,854 - 1,277,946 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rarg
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11260,817,589 - 260,839,271 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:822
Count of miRNA genes:254
Interacting mature miRNAs:330
Transcripts:ENSRNOT00000016801, ENSRNOT00000017096
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
Rarg  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,367,993 - 133,368,888 (+)MAPPERmRatBN7.2
Rnor_6.07143,840,900 - 143,841,794NCBIRnor6.0
Rnor_5.07141,638,002 - 141,638,896UniSTSRnor5.0
RGSC_v3.47140,991,608 - 140,992,502UniSTSRGSC3.4
Celera7129,801,743 - 129,802,637UniSTS
Cytogenetic Map7q36UniSTS
GDB:677651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,367,905 - 133,368,232 (+)MAPPERmRatBN7.2
Rnor_6.07143,840,812 - 143,841,138NCBIRnor6.0
Rnor_5.07141,637,914 - 141,638,240UniSTSRnor5.0
RGSC_v3.47140,991,520 - 140,991,846UniSTSRGSC3.4
Celera7129,801,655 - 129,801,981UniSTS
Cytogenetic Map7q36UniSTS
Rarg  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,368,766 - 133,368,942 (+)MAPPERmRatBN7.2
Rnor_6.07143,841,673 - 143,841,848NCBIRnor6.0
Rnor_5.07141,638,775 - 141,638,950UniSTSRnor5.0
RGSC_v3.47140,992,381 - 140,992,556UniSTSRGSC3.4
Celera7129,802,516 - 129,802,691UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016801   ⟹   ENSRNOP00000016801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,246,427 - 135,257,805 (-)Ensembl
mRatBN7.2 Ensembl7133,367,833 - 133,379,216 (-)Ensembl
Rnor_6.0 Ensembl7143,840,739 - 143,852,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000017096   ⟹   ENSRNOP00000017096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,246,427 - 135,268,889 (-)Ensembl
mRatBN7.2 Ensembl7133,367,840 - 133,390,177 (-)Ensembl
Rnor_6.0 Ensembl7143,839,980 - 143,863,186 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126264   ⟹   ENSRNOP00000099782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,246,427 - 135,258,287 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130784   ⟹   ENSRNOP00000108093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,246,427 - 135,259,202 (-)Ensembl
RefSeq Acc Id: NM_001135249   ⟹   NP_001128721
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,246,427 - 135,268,889 (-)NCBI
mRatBN7.27133,367,833 - 133,390,301 (-)NCBI
Rnor_6.07143,840,739 - 143,863,206 (-)NCBI
Rnor_5.07141,637,841 - 141,660,460 (-)NCBI
RGSC_v3.47140,991,447 - 141,014,108 (-)RGD
Celera7129,801,582 - 129,823,782 (-)RGD
Sequence:
RefSeq Acc Id: NM_001135250   ⟹   NP_001128722
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,246,427 - 135,257,805 (-)NCBI
mRatBN7.27133,367,833 - 133,379,216 (-)NCBI
Rnor_6.07143,840,739 - 143,852,119 (-)NCBI
Rnor_5.07141,637,841 - 141,660,460 (-)NCBI
RGSC_v3.47140,991,447 - 141,014,108 (-)RGD
Celera7129,801,582 - 129,812,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765784   ⟹   XP_008764006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,246,427 - 135,258,550 (-)NCBI
mRatBN7.27133,367,833 - 133,379,965 (-)NCBI
Rnor_6.07143,840,739 - 143,852,842 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765785   ⟹   XP_008764007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,246,427 - 135,268,836 (-)NCBI
mRatBN7.27133,367,833 - 133,390,296 (-)NCBI
Rnor_6.07143,840,739 - 143,863,180 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079887   ⟹   XP_038935815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,246,427 - 135,268,844 (-)NCBI
mRatBN7.27133,367,833 - 133,390,296 (-)NCBI
RefSeq Acc Id: XM_039079888   ⟹   XP_038935816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,250,680 - 135,258,017 (-)NCBI
mRatBN7.27133,372,101 - 133,379,431 (-)NCBI
RefSeq Acc Id: NP_001128721   ⟸   NM_001135249
- Peptide Label: isoform 1
- UniProtKB: D3ZF61 (UniProtKB/TrEMBL),   A6KCU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128722   ⟸   NM_001135250
- Peptide Label: isoform 2
- UniProtKB: D3ZWV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764007   ⟸   XM_008765785
- Peptide Label: isoform X2
- UniProtKB: D3ZF61 (UniProtKB/TrEMBL),   A6KCU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764006   ⟸   XM_008765784
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000016801   ⟸   ENSRNOT00000016801
Ensembl Acc Id: ENSRNOP00000017096   ⟸   ENSRNOT00000017096
RefSeq Acc Id: XP_038935815   ⟸   XM_039079887
- Peptide Label: isoform X2
- UniProtKB: D3ZF61 (UniProtKB/TrEMBL),   A6KCU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935816   ⟸   XM_039079888
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000099782   ⟸   ENSRNOT00000126264
Ensembl Acc Id: ENSRNOP00000108093   ⟸   ENSRNOT00000130784
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWV0-F1-model_v2 AlphaFold D3ZWV0 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695694
Promoter ID:EPDNEW_R6219
Type:multiple initiation site
Name:Rarg_1
Description:retinoic acid receptor, gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07143,852,084 - 143,852,144EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583230 AgrOrtholog
BioCyc Gene G2FUF-31944 BioCyc
Ensembl Genes ENSRNOG00000012499 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016801 ENTREZGENE
  ENSRNOT00000016801.7 UniProtKB/TrEMBL
  ENSRNOT00000017096 ENTREZGENE
  ENSRNOT00000017096.9 UniProtKB/TrEMBL
  ENSRNOT00000126264 ENTREZGENE
  ENSRNOT00000126264.1 UniProtKB/TrEMBL
  ENSRNOT00000130784.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR_like_domain UniProtKB/TrEMBL
  NR_DBD_RAR UniProtKB/TrEMBL
  NR_LBD_RAR UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd_core UniProtKB/TrEMBL
  Retinoic_acid_rcpt UniProtKB/TrEMBL
  Str_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report rno:685072 UniProtKB/TrEMBL
NCBI Gene 685072 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/TrEMBL
  RETINOIC ACID RECEPTOR GAMMA UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PhenoGen Rarg PhenoGen
PRINTS RETNOICACIDR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012499 RatGTEx
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  Str_ncl_receptor UniProtKB/TrEMBL
UniProt A0ABK0L6X8_RAT UniProtKB/TrEMBL
  A0ABK0LV04_RAT UniProtKB/TrEMBL
  A6KCU0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZF61 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWV0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Rarg  retinoic acid receptor, gamma  Rarg_mapped  retinoic acid receptor, gamma (mapped)  Data merged from RGD:3536 1643240 APPROVED
2008-12-03 Rarg  retinoic acid receptor, gamma  LOC685072  similar to Retinoic acid receptor gamma-A (RAR-gamma-A)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC685072  similar to Retinoic acid receptor gamma-A (RAR-gamma-A)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Rarg_mapped  retinoic acid receptor, gamma (mapped)      Symbol and Name updated 1556543 APPROVED
2002-06-10 Rarg  Retinoic acid receptor, gamma      Symbol and Name status set to approved 70586 APPROVED