Fcho2 (FCH and mu domain containing endocytic adaptor 2) - Rat Genome Database

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Pathways
Gene: Fcho2 (FCH and mu domain containing endocytic adaptor 2) Rattus norvegicus
Analyze
Symbol: Fcho2
Name: FCH and mu domain containing endocytic adaptor 2
RGD ID: 1565396
Description: Predicted to enable identical protein binding activity; phosphatidylinositol-4,5-bisphosphate binding activity; and phosphatidylserine binding activity. Involved in synaptic vesicle endocytosis. Is active in synapse. Orthologous to human FCHO2 (FCH and mu domain containing endocytic adaptor 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: F-BAR domain only protein 2; FCH domain only 2; FCH domain only protein 2; Fcho2-like; LOC309129; RGD1565396; similar to FCH domain only 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,813,356 - 31,916,471 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,814,950 - 31,915,445 (-)EnsemblGRCr8
mRatBN7.2230,079,143 - 30,181,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,080,962 - 30,181,241 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx237,142,108 - 37,242,707 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,236,463 - 35,337,065 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,049,355 - 30,149,579 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,927,918 - 29,029,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,926,107 - 29,029,176 (-)Ensemblrn6Rnor6.0
Rnor_5.0248,110,537 - 48,211,938 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4229,349,477 - 29,451,434 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera226,114,535 - 26,214,094 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
clathrin-coated pit  (IBA,IEA,ISO,ISS)
clathrin-coated vesicle  (IBA,ISO)
cytoplasm  (IBA)
plasma membrane  (IBA,IEA,ISO,ISS)
presynapse  (IEA)
synapse  (IDA,IMP)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. FCHo proteins are nucleators of clathrin-mediated endocytosis. Henne WM, etal., Science. 2010 Jun 4;328(5983):1281-4. doi: 10.1126/science.1188462. Epub 2010 May 6.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17540576   PMID:21762413   PMID:22484487   PMID:27237791  


Genomics

Comparative Map Data
Fcho2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,813,356 - 31,916,471 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,814,950 - 31,915,445 (-)EnsemblGRCr8
mRatBN7.2230,079,143 - 30,181,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,080,962 - 30,181,241 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx237,142,108 - 37,242,707 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,236,463 - 35,337,065 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,049,355 - 30,149,579 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,927,918 - 29,029,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,926,107 - 29,029,176 (-)Ensemblrn6Rnor6.0
Rnor_5.0248,110,537 - 48,211,938 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4229,349,477 - 29,451,434 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera226,114,535 - 26,214,094 (-)NCBICelera
Cytogenetic Map2q12NCBI
FCHO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38572,956,041 - 73,090,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl572,955,988 - 73,090,522 (+)Ensemblhg38GRCh38
GRCh37572,251,868 - 72,386,349 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,287,655 - 72,422,105 (+)NCBIBuild 36Build 36hg18NCBI36
Celera568,147,183 - 68,281,688 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef567,457,697 - 67,591,999 (+)NCBIHuRef
CHM1_1571,684,573 - 71,818,938 (+)NCBICHM1_1
T2T-CHM13v2.0573,437,124 - 73,571,849 (+)NCBIT2T-CHM13v2.0
Fcho2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,859,914 - 98,953,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,859,911 - 98,951,957 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381398,723,406 - 98,816,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,723,403 - 98,815,449 (-)Ensemblmm10GRCm38
MGSCv371399,493,361 - 99,585,404 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361399,823,567 - 99,915,303 (-)NCBIMGSCv36mm8
Celera13102,384,562 - 102,476,173 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.16NCBI
Fcho2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542527,506,660 - 27,632,983 (-)Ensembl
ChiLan1.0NW_00495542527,506,645 - 27,632,983 (-)NCBIChiLan1.0ChiLan1.0
FCHO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,224,615 - 42,363,411 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1540,378,249 - 40,519,791 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,223,201 - 42,361,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1542,822,190 - 42,958,619 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl542,824,621 - 42,958,565 (-)EnsemblpanPan2panpan1.1
FCHO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,905,497 - 56,011,395 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl255,905,520 - 56,009,131 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha252,856,825 - 52,977,919 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,405,588 - 56,526,744 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,405,494 - 56,526,744 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,465,325 - 53,587,071 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,233,789 - 54,354,882 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,124,469 - 55,245,831 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fcho2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213187,276,731 - 187,403,801 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365493,455,172 - 3,565,558 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365493,455,172 - 3,565,507 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCHO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,101,343 - 82,248,821 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1282,101,283 - 82,248,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,869,528 - 83,956,906 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCHO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,289,172 - 67,430,622 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl467,301,984 - 67,428,194 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604916,057,428 - 16,198,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcho2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249052,029,808 - 2,140,721 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249052,027,709 - 2,139,312 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fcho2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13197,780,844 - 197,883,228 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fcho2
1535 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:297
Count of miRNA genes:199
Interacting mature miRNAs:226
Transcripts:ENSRNOT00000020692
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
RH129458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2230,079,156 - 30,079,336 (+)MAPPERmRatBN7.2
Rnor_6.0228,926,114 - 28,926,293NCBIRnor6.0
Rnor_5.0248,108,733 - 48,108,912UniSTSRnor5.0
RGSC_v3.4229,347,673 - 29,347,852UniSTSRGSC3.4
Celera226,112,731 - 26,112,910UniSTS
RH 3.4 Map1164.4UniSTS
Cytogenetic Map2q12UniSTS
AU048348  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22043,958,986 - 43,959,210 (+)MAPPERmRatBN7.2
mRatBN7.2230,134,688 - 30,136,229 (+)MAPPERmRatBN7.2
Rnor_6.0228,982,112 - 28,983,652NCBIRnor6.0
Rnor_6.02045,645,617 - 45,645,840NCBIRnor6.0
Rnor_5.02047,364,460 - 47,364,683UniSTSRnor5.0
Rnor_5.0248,164,779 - 48,166,319UniSTSRnor5.0
RGSC_v3.4229,404,968 - 29,406,508UniSTSRGSC3.4
Cytogenetic Map2q12UniSTS
RH138846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2230,176,870 - 30,177,006 (+)MAPPERmRatBN7.2
Rnor_6.0229,024,901 - 29,025,036NCBIRnor6.0
Rnor_5.0248,207,568 - 48,207,703UniSTSRnor5.0
RGSC_v3.4229,447,064 - 29,447,199UniSTSRGSC3.4
Celera226,209,740 - 26,209,875UniSTS
RH 3.4 Map253.7UniSTS
Cytogenetic Map2q12UniSTS
RH140087  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2230,168,151 - 30,168,359 (+)MAPPERmRatBN7.2
Rnor_6.0229,015,434 - 29,015,641NCBIRnor6.0
Rnor_5.0248,198,101 - 48,198,308UniSTSRnor5.0
RGSC_v3.4229,438,346 - 29,438,553UniSTSRGSC3.4
Celera226,201,022 - 26,201,229UniSTS
RH 3.4 Map254.2UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020692   ⟹   ENSRNOP00000020692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,815,951 - 31,907,233 (-)Ensembl
mRatBN7.2 Ensembl230,081,739 - 30,173,029 (-)Ensembl
Rnor_6.0 Ensembl228,926,107 - 29,029,176 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100868   ⟹   ENSRNOP00000082647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,815,174 - 31,915,445 (-)Ensembl
mRatBN7.2 Ensembl230,080,962 - 30,181,241 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118345   ⟹   ENSRNOP00000085233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,847,181 - 31,915,445 (-)Ensembl
mRatBN7.2 Ensembl230,112,972 - 30,181,200 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151216   ⟹   ENSRNOP00000107615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,814,950 - 31,906,637 (-)Ensembl
RefSeq Acc Id: NM_001191632   ⟹   NP_001178561
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,815,174 - 31,915,445 (-)NCBI
mRatBN7.2230,080,962 - 30,181,241 (-)NCBI
Rnor_6.0228,927,918 - 29,029,271 (-)NCBI
Rnor_5.0248,110,537 - 48,211,938 (-)NCBI
Celera226,114,535 - 26,214,094 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063281689   ⟹   XP_063137759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,813,356 - 31,916,471 (-)NCBI
RefSeq Acc Id: XM_063281690   ⟹   XP_063137760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,813,356 - 31,916,471 (-)NCBI
RefSeq Acc Id: XM_063281691   ⟹   XP_063137761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,813,356 - 31,873,111 (-)NCBI
RefSeq Acc Id: NP_001178561   ⟸   NM_001191632
- UniProtKB: D3ZYR1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020692   ⟸   ENSRNOT00000020692
Ensembl Acc Id: ENSRNOP00000082647   ⟸   ENSRNOT00000100868
Ensembl Acc Id: ENSRNOP00000085233   ⟸   ENSRNOT00000118345
RefSeq Acc Id: XP_063137760   ⟸   XM_063281690
- Peptide Label: isoform X2
- UniProtKB: D3ZYR1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137759   ⟸   XM_063281689
- Peptide Label: isoform X1
- UniProtKB: D3ZYR1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063137761   ⟸   XM_063281691
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000107615   ⟸   ENSRNOT00000151216
Protein Domains
F-BAR   MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYR1-F1-model_v2 AlphaFold D3ZYR1 1-809 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691093
Promoter ID:EPDNEW_R1618
Type:initiation region
Name:Fcho2_1
Description:FCH domain only 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0229,029,177 - 29,029,237EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565396 AgrOrtholog
BioCyc Gene G2FUF-54708 BioCyc
Ensembl Genes ENSRNOG00000015334 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000100868 ENTREZGENE
  ENSRNOT00000100868.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot
  F_BAR UniProtKB/Swiss-Prot
  FCH_dom UniProtKB/Swiss-Prot
  FCHo2 UniProtKB/Swiss-Prot
  GMIP/FCHO2-like_FCH UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
  Muniscin_C UniProtKB/Swiss-Prot
NCBI Gene 309129 ENTREZGENE
PANTHER PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR23065:SF8 UniProtKB/Swiss-Prot
Pfam GMIP-like_FCH UniProtKB/Swiss-Prot
  muHD UniProtKB/Swiss-Prot
PhenoGen Fcho2 PhenoGen
PROSITE F_BAR UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015334 RatGTEx
SMART FCH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot
UniProt A0A8I5ZZN2_RAT UniProtKB/TrEMBL
  A0A8L2UJL1_RAT UniProtKB/TrEMBL
  A0ABK0M283_RAT UniProtKB/TrEMBL
  D3ZYR1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Fcho2  FCH and mu domain containing endocytic adaptor 2  Fcho2  FCH domain only 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Fcho2  FCH domain only 2  LOC100364209  Fcho2-like  Data merged from RGD:2321449 1643240 APPROVED
2010-05-06 LOC100364209  Fcho2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Fcho2  FCH domain only 2   Fcho2_predicted  FCH domain only 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Fcho2_predicted  FCH domain only 2 (predicted)  RGD1565396_predicted  similar to FCH domain only 2 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1565396_predicted  similar to FCH domain only 2 (predicted)  LOC309129  similar to FCH domain only 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309129  similar to FCH domain only 2      Symbol and Name status set to provisional 70820 PROVISIONAL