Stk38l (serine/threonine kinase 38 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Stk38l (serine/threonine kinase 38 like) Rattus norvegicus
Analyze
Symbol: Stk38l
Name: serine/threonine kinase 38 like
RGD ID: 1564793
Description: Predicted to enable ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in postsynapse organization. Is active in glutamatergic synapse. Orthologous to human STK38L (serine/threonine kinase 38 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC500365; LOC691337; RGD1564793; RGD1564793_predicted; serine/threonine kinase 38-like; serine/threonine-protein kinase 38-like; similar to KIAA0965 protein; similar to KIAA0965 protein (predicted); similar to putative serine/threonine kinase NDR54
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,346,969 - 181,423,844 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4181,364,919 - 181,423,840 (+)EnsemblGRCr8
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4185,919,747 - 185,976,152 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,704,262 - 181,760,667 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,324,697 - 180,381,107 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)Ensemblrn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methylmercury chloride  (ISO)
myricetin  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Chemical genetic identification of NDR1/2 kinase substrates AAK1 and Rabin8 Uncovers their roles in dendrite arborization and spine development. Ultanir SK, etal., Neuron. 2012 Mar 22;73(6):1127-42. doi: 10.1016/j.neuron.2012.01.019. Epub 2012 Mar 21.
4. MICAL-1 is a negative regulator of MST-NDR kinase signaling and apoptosis. Zhou Y, etal., Mol Cell Biol. 2011 Sep;31(17):3603-15. doi: 10.1128/MCB.01389-10. Epub 2011 Jul 5.
Additional References at PubMed
PMID:12477932   PMID:15037617   PMID:15067004   PMID:15308672   PMID:15632090   PMID:18555663  


Genomics

Comparative Map Data
Stk38l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,346,969 - 181,423,844 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4181,364,919 - 181,423,840 (+)EnsemblGRCr8
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4185,919,747 - 185,976,152 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,704,262 - 181,760,667 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,324,697 - 180,381,107 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)Ensemblrn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
STK38L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,244,286 - 27,325,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,243,968 - 27,325,959 (+)Ensemblhg38GRCh38
GRCh371227,397,219 - 27,478,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,288,373 - 27,369,795 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341227,288,374 - 27,369,794NCBI
Celera1232,542,971 - 32,624,487 (+)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1227,166,484 - 27,247,993 (+)NCBIHuRef
CHM1_11227,361,286 - 27,442,760 (+)NCBICHM1_1
T2T-CHM13v2.01227,116,250 - 27,197,594 (+)NCBIT2T-CHM13v2.0
Stk38l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,626,428 - 146,680,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,626,493 - 146,680,310 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386146,724,930 - 146,778,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,724,995 - 146,778,812 (+)Ensemblmm10GRCm38
MGSCv376146,673,452 - 146,727,336 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366146,682,178 - 146,735,977 (+)NCBIMGSCv36mm8
Celera6149,764,413 - 149,820,410 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Stk38l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,317,726 - 43,390,265 (+)Ensembl
ChiLan1.0NW_00495540543,364,474 - 43,389,618 (+)NCBIChiLan1.0ChiLan1.0
STK38L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,487,827 - 69,568,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,484,225 - 69,565,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,985,367 - 59,066,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,603,456 - 61,645,899 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,603,462 - 61,645,899 (-)EnsemblpanPan2panpan1.1
STK38L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,429,370 - 20,509,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,429,372 - 20,510,059 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2725,878,589 - 25,959,110 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02720,624,441 - 20,704,954 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,621,810 - 20,704,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,429,279 - 20,509,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,458,152 - 20,538,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,041,241 - 26,121,753 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stk38l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548258,106 - 332,652 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936548257,959 - 332,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,493,675 - 46,574,697 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1546,490,981 - 46,574,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,042,869 - 50,126,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,981,109 - 27,060,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stk38l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475050,591 - 134,481 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stk38l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v164,393,808 - 4,447,166 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stk38l
786 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:450
Count of miRNA genes:236
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000002502
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat

Markers in Region
RH138508  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24179,690,576 - 179,690,727 (+)MAPPERmRatBN7.2
Rnor_6.04181,087,135 - 181,087,285NCBIRnor6.0
Rnor_5.04245,244,630 - 245,244,780UniSTSRnor5.0
Celera4168,185,338 - 168,185,488UniSTS
RH 3.4 Map41090.0UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002502   ⟹   ENSRNOP00000002502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4181,364,919 - 181,423,840 (+)Ensembl
mRatBN7.2 Ensembl4179,634,275 - 179,690,972 (+)Ensembl
Rnor_6.0 Ensembl4181,027,212 - 181,087,530 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086813   ⟹   ENSRNOP00000068621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4181,403,690 - 181,423,840 (+)Ensembl
mRatBN7.2 Ensembl4179,674,272 - 179,690,983 (+)Ensembl
Rnor_6.0 Ensembl4181,055,662 - 181,089,740 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108452   ⟹   ENSRNOP00000083335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4181,364,919 - 181,406,078 (+)Ensembl
mRatBN7.2 Ensembl4179,634,275 - 179,675,618 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140393   ⟹   ENSRNOP00000109020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4181,403,791 - 181,423,840 (+)Ensembl
RefSeq Acc Id: NM_001083336   ⟹   NP_001076805
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,364,951 - 181,421,642 (+)NCBI
mRatBN7.24179,634,275 - 179,690,972 (+)NCBI
Rnor_6.04181,027,212 - 181,087,530 (+)NCBI
Rnor_5.04245,213,201 - 245,245,025 (+)NCBI
RGSC_v3.44184,316,579 - 184,392,709 (+)RGD
Celera4168,150,057 - 168,185,733 (+)RGD
Sequence:
RefSeq Acc Id: XM_039108393   ⟹   XP_038964321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,346,969 - 181,423,844 (+)NCBI
mRatBN7.24179,616,288 - 179,693,177 (+)NCBI
RefSeq Acc Id: XM_039108394   ⟹   XP_038964322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,364,879 - 181,423,844 (+)NCBI
mRatBN7.24179,634,209 - 179,693,177 (+)NCBI
RefSeq Acc Id: XM_063286725   ⟹   XP_063142795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,364,991 - 181,423,844 (+)NCBI
RefSeq Acc Id: NP_001076805   ⟸   NM_001083336
- UniProtKB: A0A0G2JT94 (UniProtKB/TrEMBL),   A4GW50 (UniProtKB/TrEMBL),   B1H211 (UniProtKB/TrEMBL),   D4AA09 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002502   ⟸   ENSRNOT00000002502
Ensembl Acc Id: ENSRNOP00000068621   ⟸   ENSRNOT00000086813
RefSeq Acc Id: XP_038964321   ⟸   XM_039108393
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JT94 (UniProtKB/TrEMBL),   A4GW50 (UniProtKB/TrEMBL),   B1H211 (UniProtKB/TrEMBL),   D4AA09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964322   ⟸   XM_039108394
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JT94 (UniProtKB/TrEMBL),   A4GW50 (UniProtKB/TrEMBL),   B1H211 (UniProtKB/TrEMBL),   D4AA09 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083335   ⟸   ENSRNOT00000108452
RefSeq Acc Id: XP_063142795   ⟸   XM_063286725
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JT94 (UniProtKB/TrEMBL),   A4GW50 (UniProtKB/TrEMBL),   B1H211 (UniProtKB/TrEMBL),   D4AA09 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109020   ⟸   ENSRNOT00000140393
Protein Domains
AGC-kinase C-terminal   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A4GW50-F1-model_v2 AlphaFold A4GW50 1-464 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693507
Promoter ID:EPDNEW_R4030
Type:multiple initiation site
Name:Stk38l_1
Description:serine/threonine kinase 38 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04181,027,213 - 181,027,273EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564793 AgrOrtholog
BioCyc Gene G2FUF-42425 BioCyc
Ensembl Genes ENSRNOG00000001828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002502 ENTREZGENE
  ENSRNOT00000002502.9 UniProtKB/TrEMBL
  ENSRNOT00000086813.3 UniProtKB/TrEMBL
  ENSRNOT00000108452.2 UniProtKB/TrEMBL
  ENSRNOT00000140393 ENTREZGENE
  ENSRNOT00000140393.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7460150 IMAGE-MGC_LOAD
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Rho-assoc_Ser/Thr_Kinase UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:691337 UniProtKB/TrEMBL
MGC_CLONE MGC:187219 IMAGE-MGC_LOAD
NCBI Gene Stk38l ENTREZGENE
PANTHER CHROMOSOME UNDETERMINED SCAFFOLD_135, WHOLE GENOME SHOTGUN SEQUENCE UniProtKB/TrEMBL
  MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PhenoGen Stk38l PhenoGen
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001828 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A0A0G2JT94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVV6_RAT UniProtKB/TrEMBL
  A0ABK0LVI7_RAT UniProtKB/TrEMBL
  A4GW50 ENTREZGENE, UniProtKB/TrEMBL
  B1H211 ENTREZGENE, UniProtKB/TrEMBL
  D4AA09 ENTREZGENE
UniProt Secondary D4AA09 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Stk38l  serine/threonine kinase 38 like  LOC686663  similar to putative serine/threonine kinase NDR54  Data merged from RGD:1594985 1643240 APPROVED
2008-09-22 Stk38l  serine/threonine kinase 38 like  RGD1564793  similar to KIAA0965 protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-05 RGD1564793  similar to KIAA0965 protein   LOC691337  similar to putative serine/threonine kinase NDR54  Data merged from RGD:1585080 737654 APPROVED
2008-04-30 RGD1564793  similar to KIAA0965 protein   RGD1564793_predicted  similar to KIAA0965 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC686663  similar to putative serine/threonine kinase NDR54      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691337  similar to putative serine/threonine kinase NDR54      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564793_predicted  similar to KIAA0965 protein (predicted)  LOC500365  similar to KIAA0965 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500365  similar to KIAA0965 protein      Symbol and Name status set to provisional 70820 PROVISIONAL