STK38L (serine/threonine kinase 38 like) - Rat Genome Database

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Gene: STK38L (serine/threonine kinase 38 like) Chlorocebus sabaeus
Analyze
Symbol: STK38L
Name: serine/threonine kinase 38 like
RGD ID: 18621014
Description: ENCODES a protein that exhibits magnesium ion binding (ortholog); INVOLVED IN negative regulation of autophagy (ortholog); postsynapse organization (ortholog); regulation of cellular component organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); retinal degeneration (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase 38-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,981,109 - 27,060,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STK38L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,981,109 - 27,060,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STK38L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,244,286 - 27,325,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,243,968 - 27,325,959 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,397,219 - 27,478,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,288,373 - 27,369,795 (+)NCBINCBI36Build 36hg18NCBI36
Build 341227,288,374 - 27,369,794NCBI
Celera1232,542,971 - 32,624,487 (+)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1227,166,484 - 27,247,993 (+)NCBIHuRef
CHM1_11227,361,286 - 27,442,760 (+)NCBICHM1_1
T2T-CHM13v2.01227,116,250 - 27,197,594 (+)NCBIT2T-CHM13v2.0
Stk38l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,626,428 - 146,680,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,626,493 - 146,680,310 (+)EnsemblGRCm39 Ensembl
GRCm386146,724,930 - 146,778,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,724,995 - 146,778,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv376146,673,452 - 146,727,336 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366146,682,178 - 146,735,977 (+)NCBIMGSCv36mm8
Celera6149,764,413 - 149,820,410 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Stk38l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,346,969 - 181,423,844 (+)NCBIGRCr8
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4185,919,747 - 185,976,152 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,704,262 - 181,760,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,324,697 - 180,381,107 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
Stk38l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,317,726 - 43,390,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540543,364,474 - 43,389,618 (+)NCBIChiLan1.0ChiLan1.0
STK38L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,487,827 - 69,568,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,484,225 - 69,565,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,985,367 - 59,066,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,603,456 - 61,645,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,603,462 - 61,645,899 (-)Ensemblpanpan1.1panPan2
STK38L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,429,370 - 20,509,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,429,372 - 20,510,059 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2725,878,589 - 25,959,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,624,441 - 20,704,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,621,810 - 20,704,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,429,279 - 20,509,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,458,152 - 20,538,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,041,241 - 26,121,753 (+)NCBIUU_Cfam_GSD_1.0
Stk38l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548258,106 - 332,652 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936548257,959 - 332,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,493,675 - 46,574,697 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1546,490,981 - 46,574,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,042,869 - 50,126,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Stk38l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475050,591 - 134,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 21 57
Low 15 20 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000005696   ⟹   ENSCSAP00000003911
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)Ensembl
RefSeq Acc Id: XM_007968025   ⟹   XP_007966216
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11126,981,109 - 27,060,560 (+)NCBI
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037990242   ⟹   XP_037846170
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,476 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007966216 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846170 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003911.1
Reference Protein Sequences
RefSeq Acc Id: XP_007966216   ⟸   XM_007968025
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000003911   ⟸   ENSCSAT00000005696
RefSeq Acc Id: XP_037846170   ⟸   XM_037990242
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R5M2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007644 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005696.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report csab:103218788 UniProtKB/TrEMBL
NCBI Gene STK38L ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE 38-LIKE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TK_X UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0D9R5M2 ENTREZGENE, UniProtKB/TrEMBL