Rchy1 (ring finger and CHY zinc finger domain containing 1) - Rat Genome Database

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Gene: Rchy1 (ring finger and CHY zinc finger domain containing 1) Rattus norvegicus
Analyze
Symbol: Rchy1
Name: ring finger and CHY zinc finger domain containing 1
RGD ID: 1359180
Description: Enables signaling receptor binding activity. Predicted to be involved in several processes, including positive regulation of protein metabolic process; protein autoubiquitination; and rescue of stalled ribosome. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of ubiquitin ligase complex. Biomarker of sciatic neuropathy. Orthologous to human RCHY1 (ring finger and CHY zinc finger domain containing 1); PARTICIPATES IN p53 signaling pathway; measles pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94651; Pirh2; ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase; RING finger and CHY zinc finger domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81416,397,533 - 16,413,286 (+)NCBIGRCr8
mRatBN7.21416,113,263 - 16,129,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1416,113,224 - 16,129,167 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1416,126,760 - 16,142,546 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,445,651 - 17,461,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01416,137,788 - 16,153,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,615,968 - 17,631,715 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,615,968 - 17,631,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,533,357 - 17,548,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,683,377 - 17,698,982 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,683,376 - 17,698,981 (+)NCBI
Celera1415,505,664 - 15,521,436 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1RatBrain Injuries  IEP 10045359protein:increased expression:cerebral cortexRGD 
Rchy1Ratsciatic neuropathy  IEP 10045367protein:increased expression:sciatic nerveRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1RatDisease Progression  ISORCHY1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28191284
Rchy1RatLung Neoplasms  ISORCHY1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28191284

1 to 20 of 76 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1Rat(1->4)-beta-D-glucan multiple interactionsISORchy1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RCHY1 mRNACTDPMID:36331819
Rchy1Rat1,2-dimethylhydrazine decreases expressionISORchy1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of RCHY1 mRNACTDPMID:22206623
Rchy1Rat17alpha-ethynylestradiol multiple interactionsISORchy1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RCHY1 mRNACTDPMID:17942748
Rchy1Rat17beta-estradiol decreases expressionISORchy1 (Mus musculus)6480464Estradiol results in decreased expression of RCHY1 mRNACTDPMID:39298647
Rchy1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORchy1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RCHY1 mRNACTDPMID:17942748
Rchy1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RCHY1 mRNACTDPMID:33387578
Rchy1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORchy1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RCHY1 mRNACTDPMID:21570461
Rchy1Rat2-hydroxypropanoic acid decreases expressionISORCHY1 (Homo sapiens)6480464Lactic Acid results in decreased expression of RCHY1 mRNACTDPMID:30851411
Rchy1Rat4,4'-diaminodiphenylmethane increases expressionISORchy1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of RCHY1 mRNACTDPMID:18648102
Rchy1Rataflatoxin B1 decreases methylationISORCHY1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of RCHY1 geneCTDPMID:27153756
Rchy1Ratall-trans-retinoic acid increases expressionISORCHY1 (Homo sapiens)6480464Tretinoin results in increased expression of RCHY1 mRNACTDPMID:33167477
Rchy1Ratalpha-Zearalanol multiple interactionsEXP 6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of RCHY1 mRNACTDPMID:35163327
Rchy1Ratantirheumatic drug increases expressionISORCHY1 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of RCHY1 mRNACTDPMID:24449571
Rchy1Ratarsane affects methylationISORCHY1 (Homo sapiens)6480464Arsenic affects the methylation of RCHY1 geneCTDPMID:25304211
Rchy1Ratarsenic atom affects methylationISORCHY1 (Homo sapiens)6480464Arsenic affects the methylation of RCHY1 geneCTDPMID:25304211
Rchy1Ratarsenous acid increases expressionISORCHY1 (Homo sapiens)6480464Arsenic Trioxide results in increased expression of RCHY1 mRNACTDPMID:23271742
Rchy1Ratarsenous acid multiple interactionsISORCHY1 (Homo sapiens)6480464RCHY1 protein promotes the reaction [Arsenic Trioxide results in increased degradation of TP63 protein mutant form]CTDPMID:23271742
Rchy1Ratbenzo[a]pyrene increases expressionISORchy1 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of RCHY1 mRNACTDPMID:22228805
Rchy1Ratbisphenol A increases methylationEXP 6480464bisphenol A results in increased methylation of RCHY1 geneCTDPMID:28505145
Rchy1Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of RCHY1 mRNACTDPMID:30816183 and PMID:32528016

1 to 20 of 76 rows

Cellular Component

  

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Rchy1Ratp53 binding enablesISORCHY1 (Homo sapiens)1624291UniProtKB:P04637 and PMID:19043414RGDPMID:19043414
Rchy1Ratp53 binding enablesISORCHY1 (Homo sapiens) and UniProtKB:Q96PM5-11624291UniProtKB:P04637 and PMID:19483087RGDPMID:19483087
Rchy1Ratprotein binding enablesISORCHY1 (Homo sapiens)1624291UniProtKB:K9N7C7-PRO_0000422441 more ...RGDPMID:15781263 more ...
Rchy1Ratprotein binding enablesISORCHY1 (Homo sapiens) and UniProtKB:Q96PM5-41624291UniProtKB:Q7Z699 and PMID:32814053RGDPMID:32814053
Rchy1Ratprotein binding enablesISORCHY1 (Homo sapiens) and UniProtKB:Q96PM5-41624291UniProtKB:G5E9A7 more ...RGDPMID:32814053
Rchy1Ratprotein homodimerization activity enablesISORCHY1 (Homo sapiens)1624291UniProtKB:Q96PM5 and PMID:19483087RGDPMID:19483087
Rchy1Ratsignaling receptor binding  IPISrprb (Rattus norvegicus)2316178signal recognition particle receptor and beta subunitRGD 
Rchy1Ratubiquitin protein ligase activity enablesISORCHY1 (Homo sapiens)1624291 PMID:19483087 and PMID:33909987RGDPMID:19483087 and PMID:33909987
Rchy1Ratubiquitin protein ligase activity NOT|enablesISORCHY1 (Homo sapiens) and UniProtKB:Q96PM5-41624291 PMID:20452352RGDPMID:20452352
Rchy1Ratzinc ion binding enablesISORCHY1 (Homo sapiens)1624291 PMID:19043414RGDPMID:19043414
Rchy1Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043
Rchy1Ratzinc ion binding enablesIEAInterPro:IPR0089131600115GO_REF:0000002InterProGO_REF:0000002
Rchy1Ratzinc ion binding enablesIEAInterPro:IPR008913 and InterPro:IPR0372741600115GO_REF:0000002InterProGO_REF:0000002
1 to 14 of 14 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1Ratp53 signaling pathway   ISORCHY1 (Homo sapiens)2316155 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1Ratmeasles pathway  IEA 6907045 KEGGrno:05162
Rchy1Ratp53 signaling pathway   IEA 6907045 KEGGrno:04115
Rchy1Ratubiquitin/proteasome degradation pathway  IEA 6907045 KEGGrno:04120

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rchy1Ratp53 signaling pathway   ISORCHY1 (Homo sapiens)6484113 PIDPID:200206

1 to 13 of 13 rows
#
Reference Title
Reference Citation
1. Pirh2 interacts with and ubiquitylates signal recognition particle receptor beta subunit. Abe K, etal., Biomed Res. 2008 Feb;29(1):53-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Modes of p53 regulation. Kruse JP and Gu W, Cell. 2009 May 15;137(4):609-22. doi: 10.1016/j.cell.2009.04.050.
5. Pirh2, a p53-induced ubiquitin-protein ligase, promotes p53 degradation. Leng RP, etal., Cell 2003 Mar 21;112(6):779-91.
6. Dynamic changes of PIRH2 and p27kip1 expression in injured rat sciatic nerve. Li H, etal., Neurol Sci. 2012 Aug;33(4):749-57. doi: 10.1007/s10072-011-0809-8. Epub 2011 Sep 30.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Changes in Pirh2 and p27kip1 expression following traumatic brain injury in adult rats. Wu X, etal., J Mol Neurosci. 2012 Jan;46(1):184-91. doi: 10.1007/s12031-011-9572-9. Epub 2011 Jul 5.
1 to 13 of 13 rows
PMID:15781263   PMID:19043414   PMID:19483087   PMID:25848801   PMID:37579947   PMID:38740775  



Rchy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81416,397,533 - 16,413,286 (+)NCBIGRCr8
mRatBN7.21416,113,263 - 16,129,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1416,113,224 - 16,129,167 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1416,126,760 - 16,142,546 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,445,651 - 17,461,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01416,137,788 - 16,153,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,615,968 - 17,631,715 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,615,968 - 17,631,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,533,357 - 17,548,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,683,377 - 17,698,982 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,683,376 - 17,698,981 (+)NCBI
Celera1415,505,664 - 15,521,436 (+)NCBICelera
Cytogenetic Map14p22NCBI
RCHY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38475,479,033 - 75,514,715 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl475,479,033 - 75,514,764 (-)EnsemblGRCh38hg38GRCh38
GRCh37476,404,243 - 76,439,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36476,623,371 - 76,658,652 (-)NCBINCBI36Build 36hg18NCBI36
Build 34476,761,535 - 76,796,807NCBI
Celera473,700,478 - 73,735,762 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,150,764 - 72,186,444 (-)NCBIHuRef
CHM1_1476,381,206 - 76,416,667 (-)NCBICHM1_1
T2T-CHM13v2.0478,819,170 - 78,854,879 (-)NCBIT2T-CHM13v2.0
Rchy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,096,701 - 92,110,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,096,763 - 92,110,927 (-)EnsemblGRCm39 Ensembl
GRCm38591,948,842 - 91,963,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl591,948,904 - 91,963,068 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,377,930 - 92,392,094 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,024,104 - 93,038,268 (-)NCBIMGSCv36mm8
Celera590,091,667 - 90,105,811 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map545.58NCBI
Rchy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554741,463,817 - 1,475,690 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554741,463,817 - 1,475,677 (-)NCBIChiLan1.0ChiLan1.0
RCHY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2354,558,988 - 54,591,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,748,338 - 54,780,243 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,691,213 - 48,725,979 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1454,526,197 - 54,561,054 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,526,202 - 54,561,048 (+)Ensemblpanpan1.1panPan2
RCHY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13267,136 - 94,053 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3267,509 - 93,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,788,013 - 41,814,963 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03289,116 - 116,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3289,053 - 115,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13286,184 - 113,092 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03239,247 - 66,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03240,106,164 - 40,133,080 (+)NCBIUU_Cfam_GSD_1.0
Rchy1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,927,449 - 12,003,857 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936598436,260 - 453,137 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936598436,559 - 453,137 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCHY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,162,840 - 71,181,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,155,388 - 71,182,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,355,281 - 75,368,606 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCHY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1723,989,028 - 24,025,151 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl723,989,745 - 24,025,437 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,311,593 - 2,352,613 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rchy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624730322,448 - 342,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rchy1
100 total Variants

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:134
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000003470
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat

1 to 10 of 17 rows
RH127475  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21416,128,680 - 16,128,830 (+)MAPPERmRatBN7.2
Rnor_6.01417,631,385 - 17,631,534NCBIRnor6.0
Rnor_5.01417,548,364 - 17,548,513UniSTSRnor5.0
RGSC_v3.41417,698,652 - 17,698,801UniSTSRGSC3.4
Celera1415,521,106 - 15,521,255UniSTS
Cytogenetic Map14p22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000003470   ⟹   ENSRNOP00000003470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1416,113,224 - 16,129,005 (+)Ensembl
Rnor_6.0 Ensembl1417,615,968 - 17,631,714 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104798   ⟹   ENSRNOP00000084319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1416,113,655 - 16,129,167 (+)Ensembl
RefSeq Acc Id: NM_001007618   ⟹   NP_001007619
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81416,397,533 - 16,413,280 (+)NCBI
mRatBN7.21416,113,263 - 16,129,011 (+)NCBI
Rnor_6.01417,615,968 - 17,631,715 (+)NCBI
Rnor_5.01417,533,357 - 17,548,694 (+)NCBI
RGSC_v3.41417,683,377 - 17,698,982 (+)RGD
Celera1415,505,664 - 15,521,436 (+)RGD
Sequence:
RefSeq Acc Id: XM_039091675   ⟹   XP_038947603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81416,403,350 - 16,413,286 (+)NCBI
mRatBN7.21416,119,080 - 16,129,017 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001007619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947603 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83739 (Get FASTA)   NCBI Sequence Viewer  
  EDL88590 (Get FASTA)   NCBI Sequence Viewer  
  EDL88591 (Get FASTA)   NCBI Sequence Viewer  
  EDL88592 (Get FASTA)   NCBI Sequence Viewer  
  EDL88593 (Get FASTA)   NCBI Sequence Viewer  
  EDL88594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003470
  ENSRNOP00000003470.3
  ENSRNOP00000084319.1
1 to 11 of 11 rows
RefSeq Acc Id: NP_001007619   ⟸   NM_001007618
- UniProtKB: Q5XIE4 (UniProtKB/TrEMBL),   A6KKB6 (UniProtKB/TrEMBL),   A0A8I5ZWY8 (UniProtKB/TrEMBL),   A6KKB7 (UniProtKB/TrEMBL),   F7F3N3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003470   ⟸   ENSRNOT00000003470
RefSeq Acc Id: XP_038947603   ⟸   XM_039091675
- Peptide Label: isoform X1
- UniProtKB: A6KKC0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084319   ⟸   ENSRNOT00000104798
CHY-type   CTCHY-type   RING-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIE4-F1-model_v2 AlphaFold Q5XIE4 1-261 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699218
Promoter ID:EPDNEW_R9743
Type:multiple initiation site
Name:Rchy1_1
Description:ring finger and CHY zinc finger domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,615,931 - 17,615,991EPDNEW


1 to 40 of 40 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-16238 BioCyc
Ensembl Genes ENSRNOG00000002546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003470 ENTREZGENE
  ENSRNOT00000003470.5 UniProtKB/TrEMBL
  ENSRNOT00000104798.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.28.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191744 IMAGE-MGC_LOAD
InterPro RCHY1_zinc-ribbon UniProtKB/TrEMBL
  Znf_CHY UniProtKB/TrEMBL
  Znf_CHY_sf UniProtKB/TrEMBL
  Znf_CTCHY UniProtKB/TrEMBL
  Znf_CTCHY_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:289508 UniProtKB/TrEMBL
MGC_CLONE MGC:94651 IMAGE-MGC_LOAD
NCBI Gene 289508 ENTREZGENE
PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-CHY UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
  zinc_ribbon_6 UniProtKB/TrEMBL
PhenoGen Rchy1 PhenoGen
PROSITE ZF_CHY UniProtKB/TrEMBL
  ZF_CTCHY UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002546 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF161219 UniProtKB/TrEMBL
  SSF161245 UniProtKB/TrEMBL
UniProt A0A8I5ZWY8 ENTREZGENE, UniProtKB/TrEMBL
  A6KKB6 ENTREZGENE, UniProtKB/TrEMBL
  A6KKB7 ENTREZGENE, UniProtKB/TrEMBL
  A6KKB8_RAT UniProtKB/TrEMBL
  A6KKC0 ENTREZGENE, UniProtKB/TrEMBL
  F7F3N3 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIE4 ENTREZGENE
UniProt Secondary Q5XIE4 UniProtKB/TrEMBL
1 to 40 of 40 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-21 Rchy1  ring finger and CHY zinc finger domain containing 1  Rchy1  ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Rchy1  ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase  Rchy1  ring finger and CHY zinc finger domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Rchy1  ring finger and CHY zinc finger domain containing 1      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Rchy1  ring finger and CHY zinc finger domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL