Lpcat1 (lysophosphatidylcholine acyltransferase 1) - Rat Genome Database

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Gene: Lpcat1 (lysophosphatidylcholine acyltransferase 1) Rattus norvegicus
Analyze
Symbol: Lpcat1
Name: lysophosphatidylcholine acyltransferase 1
RGD ID: 1311599
Description: Enables 1-acylglycerol-3-phosphate O-acyltransferase activity and 1-acylglycerophosphocholine O-acyltransferase activity. Predicted to be involved in phosphatidylcholine acyl-chain remodeling and phospholipid biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of phosphatidylcholine biosynthetic process; positive regulation of protein catabolic process; and surfactant homeostasis. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1); PARTICIPATES IN ether lipid metabolic pathway; ether lipid metabolic pathway; glycerophospholipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-acylglycerol-3-phosphate O-acyltransferase; 1-acylglycerophosphocholine O-acyltransferase; 1-alkenylglycerophosphocholine O-acyltransferase; 1-alkylglycerophosphocholine O-acetyltransferase; acetyl-CoA:lyso-PAF acetyltransferase; acetyl-CoA:lyso-platelet-activating factor acetyltransferase; acyltransferase like 2; acyltransferase-like 2; Aytl2; LOC361467; LPC acyltransferase 1; LPCAT-1; lyso-PAF acetyltransferase; lysoPAFAT; lysoPC acyltransferase 1; RGD1311599; similar to hypothetical protein FLJ20481
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,594,621 - 31,644,946 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl131,594,622 - 31,644,946 (-)EnsemblGRCr8
mRatBN7.2129,766,070 - 29,816,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,766,071 - 29,816,401 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,567,204 - 29,617,533 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,567,047 - 35,617,376 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,767,829 - 29,818,157 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,379,431 - 32,429,917 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,379,432 - 32,429,917 (-)Ensemblrn6Rnor6.0
Rnor_5.0133,802,632 - 33,853,118 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4130,573,254 - 30,624,147 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,412,898 - 28,463,109 (-)NCBICelera
RGSC_v3.1130,576,204 - 30,627,092 (-)NCBI
Cytogenetic Map1p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
ciglitazone  (ISO)
cobalt dichloride  (EXP,ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glyphosate  (EXP)
imidacloprid  (EXP)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lithocholic acid  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
nickel sulfate  (ISO)
nitrates  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paraquat  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thiabendazole  (EXP)
thifluzamide  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of a lysophosphatidylcholine acyltransferase in alveolar type II cells. Chen X, etal., Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11724-9. doi: 10.1073/pnas.0604946103. Epub 2006 Jul 24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15057822   PMID:16704971   PMID:18156367   PMID:18285344   PMID:19946888   PMID:20018880   PMID:21052544   PMID:21498505   PMID:22296727  


Genomics

Comparative Map Data
Lpcat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,594,621 - 31,644,946 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl131,594,622 - 31,644,946 (-)EnsemblGRCr8
mRatBN7.2129,766,070 - 29,816,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,766,071 - 29,816,401 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,567,204 - 29,617,533 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,567,047 - 35,617,376 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,767,829 - 29,818,157 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,379,431 - 32,429,917 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,379,432 - 32,429,917 (-)Ensemblrn6Rnor6.0
Rnor_5.0133,802,632 - 33,853,118 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4130,573,254 - 30,624,147 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,412,898 - 28,463,109 (-)NCBICelera
RGSC_v3.1130,576,204 - 30,627,092 (-)NCBI
Cytogenetic Map1p11NCBI
LPCAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,461,427 - 1,523,960 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,456,480 - 1,524,282 (-)Ensemblhg38GRCh38
GRCh3751,461,542 - 1,524,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,514,542 - 1,577,076 (-)NCBIBuild 36Build 36hg18NCBI36
Celera51,499,585 - 1,562,101 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,442,770 - 1,505,328 (-)NCBIHuRef
CHM1_151,461,370 - 1,523,947 (-)NCBICHM1_1
T2T-CHM13v2.051,373,271 - 1,435,654 (-)NCBIT2T-CHM13v2.0
Lpcat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,615,332 - 73,664,539 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,615,316 - 73,664,541 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381373,467,231 - 73,516,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,467,197 - 73,516,422 (+)Ensemblmm10GRCm38
MGSCv371373,604,831 - 73,651,986 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361373,933,228 - 73,982,413 (+)NCBIMGSCv36mm8
Celera1375,795,573 - 75,842,729 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1339.97NCBI
Lpcat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504758,881 - 791,996 (-)Ensembl
ChiLan1.0NW_004955504760,941 - 791,996 (-)NCBIChiLan1.0ChiLan1.0
LPCAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,732,113 - 1,797,068 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,503,853 - 1,544,741 (-)EnsemblpanPan2panpan1.1
LPCAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,162,715 - 11,195,380 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,164,615 - 11,193,681 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3415,658,942 - 15,705,323 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03411,049,553 - 11,095,789 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,049,271 - 11,095,790 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,100,715 - 11,147,111 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,079,852 - 11,126,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,290,686 - 11,337,070 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lpcat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,130,919 - 244,184,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815292,200 - 344,413 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936815281,664 - 345,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPCAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,134,465 - 79,173,772 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11679,134,396 - 79,173,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,797,427 - 85,837,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LPCAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,273,542 - 1,333,840 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,275,769 - 1,333,801 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605435,841,315 - 35,902,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpcat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751730,472 - 764,430 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624751732,364 - 764,421 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Lpcat1
213 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:446
Count of miRNA genes:237
Interacting mature miRNAs:306
Transcripts:ENSRNOT00000024111
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024111   ⟹   ENSRNOP00000024111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl131,594,622 - 31,644,946 (-)Ensembl
mRatBN7.2 Ensembl129,766,071 - 29,816,401 (-)Ensembl
Rnor_6.0 Ensembl132,379,432 - 32,429,917 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108874   ⟹   ENSRNOP00000086508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl131,594,622 - 31,628,246 (-)Ensembl
mRatBN7.2 Ensembl129,766,071 - 29,803,247 (-)Ensembl
RefSeq Acc Id: NM_001100735   ⟹   NP_001094205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8131,594,621 - 31,644,946 (-)NCBI
mRatBN7.2129,766,070 - 29,816,401 (-)NCBI
Rnor_6.0132,379,431 - 32,429,917 (-)NCBI
Rnor_5.0133,802,632 - 33,853,118 (-)NCBI
RGSC_v3.4130,573,254 - 30,624,147 (-)RGD
Celera128,412,898 - 28,463,109 (-)RGD
Sequence:
RefSeq Acc Id: XM_039081212   ⟹   XP_038937140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8131,594,621 - 31,644,815 (-)NCBI
mRatBN7.2129,766,070 - 29,816,263 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001094205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937140 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE94689 (Get FASTA)   NCBI Sequence Viewer  
  EDL87651 (Get FASTA)   NCBI Sequence Viewer  
  EDL87652 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024111
  ENSRNOP00000024111.5
GenBank Protein Q1HAQ0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001094205   ⟸   NM_001100735
- UniProtKB: Q1HAQ0 (UniProtKB/Swiss-Prot),   A6JUX7 (UniProtKB/TrEMBL),   A0A8I6A2C9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024111   ⟸   ENSRNOT00000024111
RefSeq Acc Id: XP_038937140   ⟸   XM_039081212
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2C9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086508   ⟸   ENSRNOT00000108874
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q1HAQ0-F1-model_v2 AlphaFold Q1HAQ0 1-534 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689569
Promoter ID:EPDNEW_R94
Type:initiation region
Name:Lpcat1_1
Description:lysophosphatidylcholine acyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0132,429,912 - 32,429,972EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311599 AgrOrtholog
BioCyc Gene G2FUF-61923 BioCyc
BioCyc Pathway PWY-7409 [phospholipid remodeling (phosphatidylethanolamine, yeast)] BioCyc
  PWY-7416 [phospholipid remodeling (phosphatidylcholine, yeast)] BioCyc
BioCyc Pathway Image PWY-7409 BioCyc
  PWY-7416 BioCyc
Ensembl Genes ENSRNOG00000017930 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024111 ENTREZGENE
  ENSRNOT00000024111.6 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  LPCAT1-like UniProtKB/Swiss-Prot
  Plipid/glycerol_acylTrfase UniProtKB/Swiss-Prot
KEGG Report rno:361467 UniProtKB/Swiss-Prot
NCBI Gene 361467 ENTREZGENE
PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  PHOSPHOLIPID ACYLTRANSFERASE UniProtKB/Swiss-Prot
Pfam Acyltransferase UniProtKB/Swiss-Prot
  EF-hand_8 UniProtKB/Swiss-Prot
PhenoGen Lpcat1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017930 RatGTEx
SMART EFh UniProtKB/Swiss-Prot
  PlsC UniProtKB/Swiss-Prot
Superfamily-SCOP Glycerol-3-phosphate (1)-acyltransferase UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
UniProt A0A8I6A2C9 ENTREZGENE, UniProtKB/TrEMBL
  A6JUX7 ENTREZGENE, UniProtKB/TrEMBL
  PCAT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-10 Lpcat1  lysophosphatidylcholine acyltransferase 1  Aytl2_predicted  acyltransferase like 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Aytl2_predicted  acyltransferase like 2 (predicted)  RGD1311599_predicted  similar to hypothetical protein FLJ20481 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311599_predicted  similar to hypothetical protein FLJ20481 (predicted)  LOC361467_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361467_predicted  similar to hypothetical protein FLJ20481 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL