Fpr1 (formyl peptide receptor 1) - Rat Genome Database

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Gene: Fpr1 (formyl peptide receptor 1) Rattus norvegicus
Analyze
Symbol: Fpr1
Name: formyl peptide receptor 1
RGD ID: 1310883
Description: Enables RAGE receptor binding activity and scavenger receptor binding activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in cytoplasm and plasma membrane. Orthologous to human FPR1 (formyl peptide receptor 1); PARTICIPATES IN Staphylococcus aureus infection pathway; INTERACTS WITH (S)-nicotine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fMet-Leu-Phe receptor; LOC292409
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,417,991 - 67,429,813 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl167,421,313 - 67,422,520 (-)EnsemblGRCr8
mRatBN7.2158,745,019 - 58,756,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,747,246 - 58,756,559 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx163,572,199 - 63,573,406 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,264,846 - 72,266,053 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,482,253 - 65,483,460 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0159,759,025 - 59,767,258 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,765,835 - 59,767,042 (+)Ensemblrn6Rnor6.0
Rnor_5.0160,678,373 - 60,686,780 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4156,587,183 - 56,588,390 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera154,929,280 - 54,930,487 (-)NCBICelera
RGSC_v3.1156,590,267 - 56,591,306 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
membrane  (IEA)
plasma membrane  (IBA,IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional and physical interactions between formyl-peptide-receptors and scavenger receptor MARCO and their involvement in amyloid beta 1-42-induced signal transduction in glial cells. Brandenburg LO, etal., J Neurochem. 2010 May;113(3):749-60. doi: 10.1111/j.1471-4159.2010.06637.x. Epub 2010 Feb 5.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Involvement of formyl peptide receptors in receptor for advanced glycation end products (RAGE)--and amyloid beta 1-42-induced signal transduction in glial cells. Slowik A, etal., Mol Neurodegener. 2012 Nov 20;7:55. doi: 10.1186/1750-1326-7-55.
Additional References at PubMed
PMID:10823817   PMID:12218158   PMID:12470609   PMID:16516855   PMID:22094028   PMID:22859307   PMID:27173446   PMID:27782092   PMID:34565207  


Genomics

Comparative Map Data
Fpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,417,991 - 67,429,813 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl167,421,313 - 67,422,520 (-)EnsemblGRCr8
mRatBN7.2158,745,019 - 58,756,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,747,246 - 58,756,559 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx163,572,199 - 63,573,406 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,264,846 - 72,266,053 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,482,253 - 65,483,460 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0159,759,025 - 59,767,258 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,765,835 - 59,767,042 (+)Ensemblrn6Rnor6.0
Rnor_5.0160,678,373 - 60,686,780 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4156,587,183 - 56,588,390 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera154,929,280 - 54,930,487 (-)NCBICelera
RGSC_v3.1156,590,267 - 56,591,306 (-)NCBI
Cytogenetic Map1q12NCBI
FPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,745,172 - 51,751,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,745,172 - 51,804,115 (-)Ensemblhg38GRCh38
GRCh371952,248,425 - 52,255,131 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,940,838 - 56,946,962 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341956,940,838 - 56,946,962NCBI
Celera1949,298,576 - 49,304,713 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,579,824 - 48,585,911 (-)NCBIHuRef
CHM1_11952,250,849 - 52,256,974 (-)NCBICHM1_1
T2T-CHM13v2.01954,832,367 - 54,839,072 (-)NCBIT2T-CHM13v2.0
Fpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391718,096,733 - 18,104,201 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1718,096,733 - 18,104,202 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381717,876,471 - 17,883,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1717,876,471 - 17,883,940 (-)Ensemblmm10GRCm38
MGSCv371718,013,435 - 18,020,903 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361717,581,089 - 17,588,557 (-)NCBIMGSCv36mm8
Celera1718,817,219 - 18,824,687 (-)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1710.63NCBI
FPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22057,789,383 - 57,795,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11959,709,137 - 59,719,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01948,689,984 - 48,696,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11957,569,337 - 57,575,454 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1957,569,506 - 57,570,558 (-)EnsemblpanPan2panpan1.1
LOC101973797
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093494,740,837 - 4,746,114 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937026155,550 - 156,608 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004937026155,550 - 156,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1644,568,338 - 44,574,614 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl644,568,501 - 44,569,559 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607324,622,818 - 24,629,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,308,802 - 3,309,845 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248323,305,274 - 3,309,964 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Fpr1
70 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:12
Count of miRNA genes:12
Interacting mature miRNAs:12
Transcripts:ENSRNOT00000014842
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
UniSTS:546772  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera154,929,551 - 54,930,423UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 3 10 60 36 44 21 63 21 3 131 90 11 42 14 22 23 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000014842   ⟹   ENSRNOP00000014841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl167,421,313 - 67,422,520 (-)Ensembl
mRatBN7.2 Ensembl158,747,246 - 58,756,559 (-)Ensembl
Rnor_6.0 Ensembl159,765,835 - 59,767,042 (+)Ensembl
RefSeq Acc Id: NM_001106216   ⟹   NP_001099686
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8167,421,313 - 67,422,520 (-)NCBI
mRatBN7.2158,748,266 - 58,749,473 (-)NCBI
Rnor_6.0159,765,835 - 59,767,042 (+)NCBI
Rnor_5.0160,678,373 - 60,686,780 (+)NCBI
RGSC_v3.4156,587,183 - 56,588,390 (-)RGD
Celera154,929,280 - 54,930,487 (-)RGD
Sequence:
RefSeq Acc Id: XM_006227988   ⟹   XP_006228050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8167,419,894 - 67,429,813 (-)NCBI
mRatBN7.2158,747,969 - 58,756,776 (-)NCBI
Rnor_6.0159,759,025 - 59,767,258 (+)NCBI
Rnor_5.0160,678,373 - 60,686,780 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103536   ⟹   XP_038959464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8167,417,991 - 67,429,806 (-)NCBI
mRatBN7.2158,745,019 - 58,756,773 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099686 (Get FASTA)   NCBI Sequence Viewer  
  XP_006228050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959464 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014841
  ENSRNOP00000014841.2
RefSeq Acc Id: NP_001099686   ⟸   NM_001106216
- UniProtKB: D4A7Q2 (UniProtKB/TrEMBL),   A6KB73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228050   ⟸   XM_006227988
- Peptide Label: isoform X1
- UniProtKB: D4A7Q2 (UniProtKB/TrEMBL),   A6KB73 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014841   ⟸   ENSRNOT00000014842
RefSeq Acc Id: XP_038959464   ⟸   XM_039103536
- Peptide Label: isoform X2
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7Q2-F1-model_v2 AlphaFold D4A7Q2 1-355 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310883 AgrOrtholog
BioCyc Gene G2FUF-61252 BioCyc
Ensembl Genes ENSRNOG00000011174 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014842 ENTREZGENE
  ENSRNOT00000014842.6 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  Frt_met_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
KEGG Report rno:292409 UniProtKB/TrEMBL
NCBI Gene 292409 ENTREZGENE
PANTHER PTHR24225 UniProtKB/TrEMBL
  PTHR24225:SF15 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PhenoGen Fpr1 PhenoGen
PRINTS FMETLEUPHER UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011174 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6KB73 ENTREZGENE, UniProtKB/TrEMBL
  D4A7Q2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Fpr1  formyl peptide receptor 1   Fpr1_predicted  formyl peptide receptor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Fpr1_predicted  formyl peptide receptor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED