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Gene: Fcgr1a (Fc gamma receptor 1A) Rattus norvegicus

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Symbol:

Fcgr1a

Name:

Fc gamma receptor 1A

RGD ID:

1309912

Description:

Enables leukotriene receptor binding activity. Involved in several processes, including positive regulation of phagocytosis, engulfment; response to aldosterone; and response to estradiol. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Biomarker of retinal degeneration. Orthologous to several human genes including FCGR1A (Fc gamma receptor Ia); PARTICIPATES IN Fc gamma receptor mediated signaling pathway; Leishmaniasis pathway; phagocytosis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fc fragment of IgG high affinity Ib receptor; Fc fragment of IgG receptor Ia; Fc fragment of IgG, high affinity Ia, receptor (CD64); Fc fragment of IgG, high affinity Ib, receptor; Fc fragment of IgG, high affinity Ib, receptor for (CD64); Fc gamma receptor Ia; Fc receptor, IgG, high affinity I; FcgammaRI; Fcgr1; Fcgr1b; high affinity IgG Fc receptor, subunit beta; high affinity immunoglobulin gamma Fc receptor I; high-affinity immunoglobulin gamma Fc receptor I; LOC295279

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FCGR1A (Fc gamma receptor Ia)	HGNC	Ensembl, HomoloGene, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Fcgr1 (Fc receptor, IgG, high affinity I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FCGR1A (Fc gamma receptor Ia)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FCGR1A (Fc fragment of IgG receptor Ia)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fcgr1a (Fc fragment of IgG receptor Ia)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FCGR1A (Fc fragment of IgG, high affinity Ia, receptor (CD64))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FCGR1A (Fc gamma receptor Ia)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fcgr1a (Fc fragment of IgG receptor Ia)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FCGR1BP (Fc gamma receptor Ib, pseudogene)	HGNC	EggNOG
Alliance orthologs ³
Mus musculus (house mouse):	Fcgr1 (Fc receptor, IgG, high affinity I)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FCGR1A (Fc gamma receptor Ia)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FCGR1BP (Fc gamma receptor Ib, pseudogene)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FCGR1BP (Fc gamma receptor Ib, pseudogene)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-10h3.1	Alliance	DIOPT (InParanoid\|PANTHER)
Danio rerio (zebrafish):	si:dkey-23a13.2	Alliance	DIOPT (InParanoid\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	fcgr1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	fgfr1op2	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	XB5897201 [provisional:fcrl3]	Alliance	DIOPT (Ensembl Compara\|OMA\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	XB5960289 [provisional:fcrl4]	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	XB5960289 [provisional:fcrl4]	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fcrl3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	XB5991222	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fcrl5l	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	XB5991177	Alliance	DIOPT (OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100490686	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101732815	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fcrlb	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406858	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100494460	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fcrla	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100490686	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100494132	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100494132	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100488970	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406853	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100493237	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC105948225	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100488970	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406860	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406858	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100494460	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406853	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100490516	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,539,941 - 186,548,941 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	186,539,942 - 186,548,858 (-)	Ensembl				GRCr8
mRatBN7.2	2	183,851,075 - 183,860,077 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,851,077 - 183,859,994 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	191,514,627 - 191,523,542 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	189,313,778 - 189,322,712 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	184,147,164 - 184,156,079 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	198,430,536 - 198,439,453 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,430,530 - 198,458,041 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	217,916,295 - 217,925,212 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	191,095,026 - 191,103,942 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	176,378,627 - 176,387,543 (-)	NCBI		Celera
RGSC_v3.1	2	191,057,780 - 191,066,696 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Lung Injury (IMP)

calcinosis (ISO)

Experimental Arthritis (IEP,ISO)

Experimental Liver Cirrhosis (ISO)

heart valve disease (ISO)

Hyperalgesia (IMP)

juvenile rheumatoid arthritis (ISO)

Kidney Reperfusion Injury (ISO)

retinal degeneration (IEP)

RETINAL DYSTROPHY WITH INNER RETINAL DYSFUNCTION AND GANGLION CELL ABNORMALITIES (IEP)

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

Azoxymethane (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

ciguatoxin CTX1B (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dichloromethane (EXP)

diethylstilbestrol (ISO)

dioxygen (ISO)

ethylbenzene (EXP)

folic acid (ISO)

furan (EXP)

genistein (EXP)

gentamycin (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

maleic acid (ISO)

manganese atom (EXP)

manganese(0) (EXP)

manganese(II) chloride (EXP)

mercury atom (ISO)

mercury dichloride (ISO)

mercury(0) (ISO)

metam (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-adenosyl-L-methioninate (ISO)

S-adenosyl-L-methionine (ISO)

silicon dioxide (EXP)

silver atom (ISO)

silver(0) (ISO)

sirolimus (ISO)

sodium arsenite (ISO)

tamibarotene (ISO)

testosterone (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antibody-dependent cellular cytotoxicity (IBA,IEA,ISO)

antigen processing and presentation of exogenous antigen (ISO)

antigen processing and presentation of exogenous peptide antigen via MHC class I (ISO)

cell surface receptor signaling pathway (IBA,ISO)

defense response to bacterium (ISO)

Fc-gamma receptor signaling pathway (ISO)

immune system process (IEA)

innate immune response (IEA)

phagocytosis, engulfment (IEA,ISO)

phagocytosis, recognition (ISO)

positive regulation of phagocytosis (IBA,ISO)

positive regulation of phagocytosis, engulfment (IMP)

positive regulation of tumor necrosis factor production (IBA)

positive regulation of type IIa hypersensitivity (ISO)

positive regulation of type III hypersensitivity (ISO)

receptor-mediated endocytosis (ISO)

regulation of immune response (ISO)

response to aldosterone (IEP)

response to bacterium (ISO)

response to epinephrine (IEP)

response to estradiol (IEP)

Cellular Component

external side of plasma membrane (IBA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

high-affinity IgG receptor activity (ISO)

IgG binding (IBA,ISO)

IgG receptor activity (IBA,IEA,ISO)

leukotriene receptor binding (IPI)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fc gamma receptor mediated signaling pathway (IEA)

Leishmaniasis pathway (IEA)

phagocytosis pathway (IEA)

Staphylococcus aureus infection pathway (IEA)

systemic lupus erythematosus pathway (IEA)

tuberculosis pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased mechanical nociceptive threshold (IMP)

increased thermal nociceptive threshold (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Reduction of activated macrophages after ischaemia-reperfusion injury diminishes oxidative stress and ameliorates renal damage.	Fet NG, etal., Nephrol Dial Transplant. 2012 Aug;27(8):3149-55. doi: 10.1093/ndt/gfr792. Epub 2012 Mar 8.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Alterations of Fc gamma receptor I and Toll-like receptor 4 mediate the antiinflammatory actions of microglia and astrocytes after adrenaline-induced blood-brain barrier opening in rats.	Li YN, etal., J Neurosci Res. 2008 Dec;86(16):3556-65. doi: 10.1002/jnr.21810.
5.	Fcγ Receptor I-Coupled Signaling in Peripheral Nociceptors Mediates Joint Pain in a Rat Model of Rheumatoid Arthritis.	Liu F, etal., Arthritis Rheumatol. 2020 Oct;72(10):1668-1678. doi: 10.1002/art.41386. Epub 2020 Sep 6.
6.	Localization of FCGR1 encoding Fcgamma receptor class I in primates: molecular evidence for two pericentric inversions during the evolution of human chromosome 1.	Maresco DL, etal., Cytogenet Cell Genet 1998;82(1-2):71-4.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Gene expression changes in the retina after systemic administration of aldosterone.	Ono A, etal., Jpn J Ophthalmol. 2018 Jul;62(4):499-507. doi: 10.1007/s10384-018-0595-4. Epub 2018 Apr 30.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Ovariectomy and subsequent treatment with estrogen receptor agonists tune the innate immune system of the hippocampus in middle-aged female rats.	Sarvari M, etal., PLoS One. 2014 Feb 13;9(2):e88540. doi: 10.1371/journal.pone.0088540. eCollection 2014.
13.	FcgammaRI ligation leads to a complex with BLT1 in lipid rafts that enhances rat lung macrophage antimicrobial functions.	Serezani CH, etal., Blood. 2009 Oct 8;114(15):3316-24. doi: 10.1182/blood-2009-01-199919. Epub 2009 Aug 5.
14.	CD64-directed immunotoxin inhibits arthritis in a novel CD64 transgenic rat model.	van Vuuren AJ, etal., J Immunol. 2006 May 15;176(10):5833-8.
15.	Delay of LPS-induced acute lung injury resolution by soluble immune complexes is neutrophil dependent.	Wu CL, etal., Shock. 2009 Sep;32(3):276-85.

Additional References at PubMed

PMID:8889548	PMID:9551950	PMID:10556798	PMID:11911823	PMID:11911824	PMID:12477932	PMID:12947022	PMID:15169676	PMID:15712658	PMID:16836651	PMID:18322202	PMID:18642700
PMID:23791745	PMID:31640731

Genomics

Comparative Map Data

Fcgr1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,539,941 - 186,548,941 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	186,539,942 - 186,548,858 (-)	Ensembl				GRCr8
mRatBN7.2	2	183,851,075 - 183,860,077 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,851,077 - 183,859,994 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	191,514,627 - 191,523,542 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	189,313,778 - 189,322,712 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	184,147,164 - 184,156,079 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	198,430,536 - 198,439,453 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,430,530 - 198,458,041 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	217,916,295 - 217,925,212 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	191,095,026 - 191,103,942 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	176,378,627 - 176,387,543 (-)	NCBI		Celera
RGSC_v3.1	2	191,057,780 - 191,066,696 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

FCGR1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	149,782,694 - 149,800,609 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	149,782,650 - 149,792,526 (+)	Ensembl			hg38	GRCh38
GRCh37	1	149,754,250 - 149,772,165 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,020,912 - 148,030,698 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	146,567,360 - 146,577,146	NCBI
Cytogenetic Map	1	q21.2	NCBI
CHM1_1	1	151,150,820 - 151,160,644 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	148,906,840 - 148,924,747 (+)	NCBI		T2T-CHM13v2.0

Fcgr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	96,190,225 - 96,201,285 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	96,190,225 - 96,201,285 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	96,282,909 - 96,293,969 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	96,282,909 - 96,293,969 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	96,086,832 - 96,097,892 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	96,368,314 - 96,379,374 (-)	NCBI		MGSCv36	mm8
Celera	3	97,711,230 - 97,722,291 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	41.72	NCBI

FCGR1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	100,047,861 - 100,056,851 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	99,802,796 - 99,811,784 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	125,127,073 - 125,136,911 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	128,805,436 - 128,815,227 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	128,805,484 - 128,814,220 (+)	Ensembl			panPan2	panpan1.1

FCGR1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,073,139 - 59,102,023 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,092,933 - 59,102,015 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,541,116 - 58,550,066 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,070,040 - 60,098,863 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,089,692 - 60,098,850 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	58,939,430 - 58,948,415 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,023,178 - 59,032,132 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	59,749,960 - 59,759,005 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fcgr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,085,119 - 21,114,589 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	115,450 - 145,785 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	115,552 - 144,970 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FCGR1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	99,233,611 - 99,242,586 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	99,233,632 - 99,242,531 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	108,773,630 - 108,782,529 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FCGR1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	13,502,010 - 13,510,802 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fcgr1a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	60,992,286 - 61,001,201 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fcgr1a
48 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	102
Count of miRNA genes:	83
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000028780
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	171994826	205135428	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Markers in Region

D3Nds11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,851,285 - 183,851,389 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,430,746 - 198,430,849	NCBI	Rnor6.0
Rnor_5.0	2	217,916,505 - 217,916,608	UniSTS	Rnor5.0
RGSC_v3.4	2	191,095,236 - 191,095,339	UniSTS	RGSC3.4
Celera	2	176,378,837 - 176,378,940	UniSTS
Cytogenetic Map	2	q34	UniSTS

D3Nds11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,851,285 - 183,851,474 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,430,746 - 198,430,934	NCBI	Rnor6.0
Rnor_5.0	2	217,916,505 - 217,916,693	UniSTS	Rnor5.0
RGSC_v3.4	2	191,095,236 - 191,095,424	UniSTS	RGSC3.4
Celera	2	176,378,837 - 176,379,025	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	65	158	91	90	59	92	59	6	354	190	11	137	81	92	31	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA859169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF416291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF113031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO555980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028780 ⟹ ENSRNOP00000028780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	186,539,942 - 186,548,858 (-)	Ensembl
mRatBN7.2 Ensembl	2	183,851,077 - 183,859,994 (-)	Ensembl
Rnor_6.0 Ensembl	2	198,430,537 - 198,439,454 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082450 ⟹ ENSRNOP00000072723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	198,430,530 - 198,458,041 (-)	Ensembl

RefSeq Acc Id:

NM_001100836 ⟹ NP_001094306

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,539,941 - 186,548,857 (-)	NCBI
mRatBN7.2	2	183,851,076 - 183,859,993 (-)	NCBI
Rnor_6.0	2	198,430,536 - 198,439,453 (-)	NCBI
Rnor_5.0	2	217,916,295 - 217,925,212 (-)	NCBI
RGSC_v3.4	2	191,095,026 - 191,103,942 (-)	RGD
Celera	2	176,378,627 - 176,387,543 (-)	RGD

Sequence:

show sequence

CAGCTTGGAGGTGACATGTGGCTTCTAACGACTCTGCTACTTTGGGTTCCAGTTGGTGGGCAAG
TAGTTAATGCCACAAAGGCTGTGGTCACCTTGCAGCCCCCATGGCTCAGCATTTTCCAGGAGGA
AAATGTCACTTTGTTGTGTGAGGGACCTCACCTGGGAGACAGTTCCACAAAGTGGTTTATCAAC
AGCACAGCCATTCAGATCTCCACACCTACCTATAGCATCCTCAAGGCCAGTTTCAAGGACAGTG
GTGAATACAAGTGTCAGACAGGTCTCTCAATGCCAAGTGACCCTGTGCAGTTAGAAATCTACAG
AGATTGGCTGCTACTCCAGACCTCCCACAGAGTCCTCACAGAAGGAGAGCCTCTGGCCTTGAGG
TGTCACCCGTGGCAGAATAAGAAAGTGTACAATGTGGCTTTCTATCGAAATGGAGAATCCCTTG
ACTTTTCTCAAGGTTCAGAGGTCACCATTCTGAAAACCAACCTGAGTCACAGCGGCATCTATCA
CTGCTCAGCCATGGGAAAAAAACTCTTCAAGTCTGCAGGAGTGTCTGTCACCGTGAAAGAGCTA
TTTGCCACACCAGTGCTGAGAGTGTCCTTGTCATCTCCCTTCCCGGAGGGGAGTCTGGTCATCC
TGAACTGTGAGACAAGATTGTTCCTGCAGAGTCCTGGCTTACGGCTTTACTTCTCCTTCTATGT
GGGCAGTAAGATCCTGGAGGACAGGAGCACATCCTCCGAGTACCACATACCAAGGGCTGAAAGG
GAAGATGATGGATCATACTGGTGCGAGGTAGCCACGGAGGACGGCCGTGTCCTTAAGCGCAGCA
CCAAGTTGGAGCTATTTGGTCCCCAGTCATCAGATCCTGTCTGGTTTCACATCCTATTTTATCT
GTCAGTGGGAATAATGTTTTTGGTGAACACAGTTCTCTATGTGAAAATACACAGGCTGCAGAGA
GAGAAAAAATACAATTTAGAAGTCCCTTTGGTTTCTGAGAAGGGGAAGAAAGCAACTTCCTTTC
AGCAAGTTAGAAGCGATGACGTGTATGAAGAAGTAACAGCCACTGTAAGATAGGCCACCCCAAA
AGAAGCTCCTGAAGGACCTCAAAACTCAGGTGACCCTGGACCTTAGCAGCCTGAACCACTTCCT
CTCTGTGGCAGTACCGTGGCACAAACTTCCCAAACTTGACCCTGAAACTGTGGGACCAAGGCAC
ACAACTCTTAAATAAAGCAAATATTCAGACTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039102048 ⟹ XP_038957976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,539,941 - 186,548,401 (-)	NCBI
mRatBN7.2	2	183,851,075 - 183,859,534 (-)	NCBI

RefSeq Acc Id:

XR_005500264

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,540,201 - 186,548,941 (-)	NCBI
mRatBN7.2	2	183,851,362 - 183,860,077 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094306	(Get FASTA)	NCBI Sequence Viewer
	XP_038957976	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58810	(Get FASTA)	NCBI Sequence Viewer
	AAL08010	(Get FASTA)	NCBI Sequence Viewer
	EDL85633	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028780
	ENSRNOP00000028780.4

RefSeq Acc Id:	NP_001094306 ⟸ NM_001100836
- Peptide Label:	precursor
- UniProtKB:	A0A0B4J2J0 (UniProtKB/TrEMBL), A6K367 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWLLTTLLLWVPVGGQVVNATKAVVTLQPPWLSIFQEENVTLLCEGPHLGDSSTKWFINSTAIQ ISTPTYSILKASFKDSGEYKCQTGLSMPSDPVQLEIYRDWLLLQTSHRVLTEGEPLALRCHPWQ NKKVYNVAFYRNGESLDFSQGSEVTILKTNLSHSGIYHCSAMGKKLFKSAGVSVTVKELFATPV LRVSLSSPFPEGSLVILNCETRLFLQSPGLRLYFSFYVGSKILEDRSTSSEYHIPRAEREDDGS YWCEVATEDGRVLKRSTKLELFGPQSSDPVWFHILFYLSVGIMFLVNTVLYVKIHRLQREKKYN LEVPLVSEKGKKATSFQQVRSDDVYEEVTATVR hide sequence

Ensembl Acc Id:

ENSRNOP00000072723 ⟸ ENSRNOT00000082450

Ensembl Acc Id:

ENSRNOP00000028780 ⟸ ENSRNOT00000028780

RefSeq Acc Id:	XP_038957976 ⟸ XM_039102048
- Peptide Label:	isoform X1

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K3P6-F1-model_v2	AlphaFold	A0A0G2K3P6	1-362	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691580

Promoter ID:

EPDNEW_R2105

Type:

multiple initiation site

Name:

Fcgr1a_1

Description:

Fc fragment of IgG receptor Ia

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	198,439,466 - 198,439,526	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309912	AgrOrtholog
BioCyc Gene	G2FUF-52039	BioCyc
Ensembl Genes	ENSRNOG00000021199	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028780	ENTREZGENE
	ENSRNOT00000028780.6	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7364883	IMAGE-MGC_LOAD
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_Fc_receptor	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Immunoglobulin	UniProtKB/TrEMBL
KEGG Report	rno:295279	UniProtKB/TrEMBL
MGC_CLONE	MGC:188236	IMAGE-MGC_LOAD
NCBI Gene	295279	ENTREZGENE
PANTHER	HIGH AFFINITY IMMUNOGLOBULIN GAMMA FC RECEPTOR I-RELATED	UniProtKB/TrEMBL
	IMMUNOGLOBULIN FC RECEPTOR	UniProtKB/TrEMBL
Pfam	Ig_2	UniProtKB/TrEMBL
	PF00047	UniProtKB/TrEMBL
PhenoGen	Fcgr1a	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021199	RatGTEx
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0B4J2J0	ENTREZGENE, UniProtKB/TrEMBL
	A6K367	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-05-05	Fcgr1a	Fc gamma receptor 1A	Fcgr1a	Fc gamma receptor 1a	Name changed	629549	APPROVED
2022-05-05	Fcgr1a	Fc gamma receptor 1a	Fcgr1a	Fc gamma receptor Ia	Name changed	629549	APPROVED
2021-11-04	Fcgr1a	Fc gamma receptor Ia	Fcgr1a	Fc fragment of IgG receptor Ia	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-20	Fcgr1a	Fc fragment of IgG receptor Ia	Fcgr1a	Fc fragment of IgG, high affinity Ia, receptor (CD64)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Fcgr1a	Fc fragment of IgG, high affinity Ia, receptor (CD64)	Fcgr1	Fc receptor, IgG, high affinity I	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-04-23	Fcgr1	Fc receptor, IgG, high affinity I	Fcgr1b	Fc fragment of IgG, high affinity Ib, receptor for (CD64)	Data merged from RGD:2600	737654	APPROVED
2005-12-06	Fcgr1	Fc receptor, IgG, high affinity I	Fcgr1_predicted	Fc receptor, IgG, high affinity I (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Fcgr1_predicted	Fc receptor, IgG, high affinity I (predicted)			Symbol and Name status set to approved	70820	APPROVED
2004-09-10	Fcgr1b	Fc fragment of IgG, high affinity Ib, receptor for (CD64)		Fc fragment of IgG, high affinity Ib, receptor	Name updated	1299863	APPROVED
2002-11-06	Fcgr1b	Fc fragment of IgG, high affinity Ib, receptor		high affinity IgG Fc receptor, subunit beta	Name updated	625702	APPROVED
2002-06-10	Fcgr1b	high affinity IgG Fc receptor, subunit beta			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype