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Gene: Lca5 (lebercilin LCA5) Rattus norvegicus

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Symbol:

Lca5

Name:

lebercilin LCA5

RGD ID:

1308555

Description:

Predicted to be involved in intraciliary transport. Predicted to act upstream of or within photoreceptor cell maintenance. Located in ciliary basal body and photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 5. Orthologous to human LCA5 (lebercilin LCA5); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LCA5, lebercilin; Leber congenital amaurosis 5; Leber congenital amaurosis 5 (human); leber congenital amaurosis 5 protein homolog; Lebercilin; LOC300866; RGD1308555; similar to RIKEN cDNA 4930431B11 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LCA5 (lebercilin LCA5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lca5 (Leber congenital amaurosis 5 (human))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lca5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LCA5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LCA5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lca5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LCA5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LCA5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lca5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lca5 (lebercilin LCA5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LCA5 (lebercilin LCA5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lca5 (Leber congenital amaurosis 5 (human))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lca5 (Leber congenital amaurosis 5 (human))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lca5 (lebercilin LCA5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6652	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG6652	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lca5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100497171	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	93,187,735 - 93,255,060 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	93,197,702 - 93,254,991 (-)	Ensembl				GRCr8
mRatBN7.2	8	84,307,696 - 84,375,025 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	84,317,659 - 84,374,956 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	89,929,315 - 89,986,500 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	88,151,561 - 88,208,851 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	86,020,981 - 86,078,357 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	90,926,309 - 90,984,271 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	90,926,311 - 90,984,224 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	90,435,348 - 90,503,675 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	88,464,748 - 88,522,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	83,973,822 - 84,031,009 (-)	NCBI		Celera
RGSC_v3.1	8	88,484,204 - 88,542,023 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

blindness (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Leber congenital amaurosis (ISO)

Leber congenital amaurosis 1 (ISO)

Leber congenital amaurosis 5 (ISO,ISS)

optic atrophy (ISO)

polycystic liver disease 2 (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

aflatoxin B1 (EXP,ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cylindrospermopsin (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intraciliary transport (IBA,ISO,ISS)

photoreceptor cell maintenance (ISO,ISS)

protein transport (IEA)

Cellular Component

axoneme (IBA,IEA,ISO)

ciliary basal body (IDA,ISO)

ciliary tip (IEA,ISO)

cilium (IEA,ISO,ISS)

cytoskeleton (IEA)

photoreceptor connecting cilium (IDA,IEA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in LCA5, encoding the ciliary protein lebercilin, cause Leber congenital amaurosis.	den Hollander AI, etal., Nat Genet. 2007 Jul;39(7):889-95. doi: 10.1038/ng2066. Epub 2007 Jun 3.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19800048	PMID:21606596	PMID:24833722

Genomics

Comparative Map Data

Lca5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	93,187,735 - 93,255,060 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	93,197,702 - 93,254,991 (-)	Ensembl				GRCr8
mRatBN7.2	8	84,307,696 - 84,375,025 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	84,317,659 - 84,374,956 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	89,929,315 - 89,986,500 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	88,151,561 - 88,208,851 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	86,020,981 - 86,078,357 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	90,926,309 - 90,984,271 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	90,926,311 - 90,984,224 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	90,435,348 - 90,503,675 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	88,464,748 - 88,522,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	83,973,822 - 84,031,009 (-)	NCBI		Celera
RGSC_v3.1	8	88,484,204 - 88,542,023 (-)	NCBI
Cytogenetic Map	8	q31	NCBI

LCA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	79,484,991 - 79,538,782 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	79,484,991 - 79,545,138 (-)	Ensembl			hg38	GRCh38
GRCh37	6	80,194,708 - 80,247,147 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	80,251,427 - 80,303,866 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	80,609,792 - 80,662,233 (-)	NCBI		Celera
Cytogenetic Map	6	q14.1	NCBI
HuRef	6	77,415,318 - 77,467,734 (-)	NCBI		HuRef
CHM1_1	6	80,292,226 - 80,344,664 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	80,690,503 - 80,744,277 (-)	NCBI		T2T-CHM13v2.0

Lca5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	83,273,408 - 83,325,047 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	83,272,346 - 83,323,180 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	83,391,355 - 83,442,994 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	83,390,293 - 83,441,127 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	83,284,962 - 83,334,734 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	83,188,073 - 83,237,816 (-)	NCBI		MGSCv36	mm8
Celera	9	80,483,800 - 80,533,764 (-)	NCBI		Celera
Cytogenetic Map	9	E2	NCBI
cM Map	9	45.42	NCBI

Lca5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955502	7,325,103 - 7,376,368 (-)	Ensembl
ChiLan1.0	NW_004955502	7,325,650 - 7,373,641 (-)	NCBI	ChiLan1.0	ChiLan1.0

LCA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	99,570,353 - 99,622,886 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	97,449,680 - 97,502,161 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	77,366,248 - 77,418,718 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	80,636,181 - 80,688,609 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	80,636,181 - 80,688,609 (-)	Ensembl			panPan2	panpan1.1

LCA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	40,443,759 - 40,527,300 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	40,444,617 - 40,527,292 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	40,316,651 - 40,400,202 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	41,206,528 - 41,290,540 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	41,206,511 - 41,259,652 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	40,528,023 - 40,611,593 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	40,503,437 - 40,587,080 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	40,645,882 - 40,729,470 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	75,767,861 - 75,828,214 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	10,671,297 - 10,703,618 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	10,652,378 - 10,702,761 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LCA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	86,597,283 - 86,685,068 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	86,596,967 - 86,685,073 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	97,295,188 - 97,383,456 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LCA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	4,197,522 - 4,230,274 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	4,197,371 - 4,248,854 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	180,411,968 - 180,464,589 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lca5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624819	6,141,740 - 6,199,624 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624819	6,143,586 - 6,199,436 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lca5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	77,544,206 - 77,578,868 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lca5
475 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	284
Count of miRNA genes:	171
Interacting mature miRNAs:	184
Transcripts:	ENSRNOT00000044931
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

BE115256

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	84,318,940 - 84,319,090 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	90,927,593 - 90,927,742	NCBI	Rnor6.0
Rnor_5.0	8	90,446,838 - 90,446,987	UniSTS	Rnor5.0
RGSC_v3.4	8	88,466,032 - 88,466,181	UniSTS	RGSC3.4
Celera	8	83,975,106 - 83,975,255	UniSTS
RH 3.4 Map	8	976.2	UniSTS
Cytogenetic Map	8	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	163	91	90	59	76	59	6	339	175	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001393917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044931 ⟹ ENSRNOP00000046841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	93,197,702 - 93,254,991 (-)	Ensembl
mRatBN7.2 Ensembl	8	84,317,659 - 84,374,956 (-)	Ensembl
Rnor_6.0 Ensembl	8	90,926,311 - 90,984,224 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086426 ⟹ ENSRNOP00000074416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	93,198,453 - 93,254,991 (-)	Ensembl
mRatBN7.2 Ensembl	8	84,319,294 - 84,374,956 (-)	Ensembl
Rnor_6.0 Ensembl	8	90,926,311 - 90,962,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090139 ⟹ ENSRNOP00000075180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	84,320,911 - 84,366,310 (-)	Ensembl
Rnor_6.0 Ensembl	8	90,927,156 - 90,975,599 (-)	Ensembl

RefSeq Acc Id:

NM_001393917 ⟹ NP_001380846

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,246,414 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,366,373 (-)	NCBI

RefSeq Acc Id:

NR_172050

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,197,700 - 93,254,991 (-)	NCBI
mRatBN7.2	8	84,317,657 - 84,374,956 (-)	NCBI

RefSeq Acc Id:

XM_008766249 ⟹ XP_008764471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,246,360 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,366,310 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,975,534 (-)	NCBI

Sequence:

show sequence

CCGCAGTCTGCAGCGTCCGGGTACTCTAGGTCTCGGGCCGGGGCTGTCAGTCGGATTCGGGGAT
CGGCCCATGATCCGGGCAGGTGCAGGAGCAAATGAAGTGTATCTTGTGTTTACTGGTGTGGACT
ACAGACATACTGTGAAGAAAACAAACTGCACATAAATAATTATTACCAGGACACCGAGGCTGCA
AAAACATTCTTCAGTACTTCCACGAATCTGTAAAACGATGTGACTAGAGAGGTCGTTTTTCCAA
ACAATGGGGGAAAGGGACCAAAGTTCAGATACTGATCAAGAAAGAAAAGGAGGCAAACACCCTT
ACTCGTCCCATTACTCGTCTGACTTCGGGTCCTCACCACAGTCTTCTGGCCCCTCGTCACCTGT
CAACACGCCACCATGTGCCAGTAATAGGGAGAAGAATCCCAAAAGACACCTGTCAGACCACCAC
GTGCGCCACCAAACCGTTAGGAAAGTGAGTCCTAAGGCTATACCCAACAAAAAGGGGGTCCGAG
TGGGATTTCGGTCCCAAAGCCTCAACAGAGAGCCACTTCGGAAAGATCCAGATATCGTAACAAA
GAGGGTTCTTTCTGCAAGACTTCTGAAAATCACCGAGCTGCAGAATGAAGTGTCTGAACTACAG
GTCAAGTTAGCCCAGCTGCTCAAAGAAAACAAGGCTTTGAAAAGTCTGCAGTATCGTCAGGAGA
AAGCACTGAGTAAGTTCGAAGATGCAGAGAATGAAATCTCACAACTTATACACCGCCATAACGG
TGAGATTACTGCGCTCAAAGAACGCTTAAGAAAATCTCAGGAGAAAGAGCGGATGGCAGAGAAA
AGAGTGAAAGACACAGAAGGGGAACTATTTAGGACGAAATTTTCCCTACAGAAACTAAAAAAGA
TCTCTGAGGCCAGACACCTACCGGAGCGAGACGATTTGGCCAAGAAACTAGTTTCAGCAGAGTT
AAAATTAGACAACACCGAGAGAAAGATTAAGGAACTATCGAAGAACCTGGAGCTAAGCACCAAC
AGCTTCCAGCGGCAGCTGCTTGCTGAAAGGAAAAGAGCGTTTGAGGCTCACGATGAAAATAAAA
TTCTCCAAAAGGAGCTGCAGCGGCTCCACCACAAGCTGAAGGAGAAGGAGAAAGAATTGGATAT
AAAAAACATCTACGCTAATCGCCTGCCCAAGTCCTCTCCAAAGAAAGAGAAAGAAATTGCAAGA
AAGCATGCATCCTGCCAGAGCGACTTTACGGACCTGTGTACAAAAGCAGTACAGACCGCTGAAG
ACTTTGAGCCGGAAGAGTTTCCTTTCACAGCACAGACAGTCCTTTGTTATGAAAACAGATGGGA
CGGGTCAGAATATCTTCCTTCGTACCTGGAATACCAGGAGCGAAATGAGCATGGGTCAGAGAGT
CTAAGCTCAACTTTGGAACAAGAAGGAAAGTACAGCGACGACCAGGATTCATGTACTGCAAAGC
AGGAGACCGGGAAGTCTGAATGTGAATGGGAAAGAGAAGAGCTTGATAAGGTGAAAGGCAAGTC
ATCTTTGCTAGGGAGAACAGAGAAGCTGGTGTTAGAAGCTGGAAGTGTCCAAACGGAAAGTTAT
CAAGCTCAAACGATTGATAAATTCCAAGACGAGGCGGAAAGACTAAAGACAGAAATGCTTCTTG
CCAAACTGAACGAAATCAACAAAGAACTCCAAGATCCCCAGAGCCTCAGCCGACCCCTTTTGCC
GTTGCTACCCAACTTCGAATCCAAGCTGTACTCTCCAGACAGAAGCCTCAGACCTTACACGTTC
TCGGAGTCCTTAGACAGATCATTTAATGGACAACATTTGTCAGACATGAGTTTTTTAACTCCCA
GGGACGAAGGCCAGAGTCCAGGACTGATCAGAAGTCCAGCTCCTTCAGATGAGTTCTCATTCGG
TAGCTACGTGCCTTCGTTTGGAAAAACACCAGGAAAGTCAAATCCACCTAGCCAAAAAAATAGC
CTTTTAGATTTCCAAAGCAACATGTCTGAGGGCCTGAGTAAAGACAGTCTAGATTTCATTTCAA
GGAAAGAGAAAAAGGCAACCCTGATGGAGCAGCTGTTCGGCACCAGCGCCAGCGCCAGCGCCAC
CAACACCAGCGCCAGCACCACCACCAACACCACCACCAACACCAACACCAACACCAACACCAAC
ACCAACACCAACTGCAATGTCCCCTCCAAGAGCATTGACTCACATTTCCCTGCTGCCAGCAGAG
GTGACTTGGACCCTCTTCATTTCCTCTCCGGGGACAGAAGCAGCAGAGTCCGGGAGCCTGATGG
TGAAGATGAAGACCTTTTCCTCAGCGAAGGAAGAAGTTTTAATCCAAATAGACACCGGTTGAAG
CACACGAGCACTAAGCCAACAGTCACGGCCGTTGACTCTATTGACGAGGACATTGAAGAGGTTA
CCCTCAGATGACTGACTGGAGCACACAGAGTATATATATTTTTTCAATTGTAAATATTAAAGTA
TTTTAATACAGTATTTATTATAAACATTTAAACTTTCAATGGTAAAGTAGACTTAGTAGGGAGT
AACTTTTAGTGGCTAACGATGGCATAATCAAACAGGTAGTACTGTTCCTCAAAGCCGCATTGTA
AGAATGCTTTTTTGTTTCGAAATGAACCCTAAGGAGAGTTGTTGCTGACTGTTCCTCTGTTGTT
ACGGCTAGGTCTCACTGAGTTAGCACTGTGGGAAGTTTTACTTCAGTAAATCTCATTTCTTTTC
CCTCTCATTTTGATCCAACCTCAGTGAGCCCAAGCACTGTTTTTCCCACTGATGGCTAAGTGGA
AATGGAGGGTCTCCGGTAGGATTAAAGACCTCAGTGGCAGACAGCAGTGGGATGTAGGAGCTGT
GCCCTTGTCTGAGGTGACAGAGCCAAGCCACTCTTGAGTGGTGGTGACAGTAATGTTGGGACTT
CATTTTCTTGGAAAACCATCCCTGGGGACTTGAGGGTGTTTAGAGGAGTGTGCACTGGGCGGTG
ACTCCTCAGGAGTAATTGATACTCCTCAGTTGCAGGCCCGGAGTCACTCAGTGCTGCCTTGCTG
GCCGCGTGCGTGGATACGGTAGAGCACAGGAGACATGGCTGCCTTAATGGCCTTCCTTTCTGTG
GCTGCAGGAGGCTTGGGCACAAGCTCAAGGCTGTCCTTCCTCTCCTCTTCTGTACACTCTAAAT
TCTGGTGACAGGTGAAAGATTCCCTACCAAATACGGGCAGTAGAAGAAATGCCAGCCCAACACA
ATGATTTTCAACTCAATTATGTTTCCAGAGTGTTATGTTTGGAAATTTTCATACATATTTTTAA
TATTTGAACTTGTGCTCAAACTCAGGAGACAGCAGTGCGATACTCGTGAGTTTGTGATGTTGAC
ACAACTTCACCAAGAAGTTTTTAGACGTGGGGCTCCTGTCTTTCTGAGTAGATGCGATAGCTTT
CTGTTGAAAGGCAAGGTCCTTCCACTCAGTCCAGGATAGCTGAGGGGCATTTGCTGACTTGGTC
TGGCCTGTTGGAGCAGTAATGTATCAGCCAAGGAGAAGCATTGCGTGGAACGCGGGTGACCTGT
GGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGG
TGACCTGAGCAGTGTGTCCATTTGTTCACATCTCATGCAAGGCTTAGGGAAGGCGTTCCCATGT
TGTCTGGGTTCTTCTGCTGTTACTTGGTAAGACCTTCCCTGGTCAGTCCTAATTCACGGCTGTA
CTGCTGTCTTCCCCCTGGATTGGGTTCTTGTCATTTTGGGGGAACAAACTCTCCTTAAAGTGCT
AAATAATATTTAAAATTTTTCTCAGGAGAGGACTTTATGAATAAGCATTTACTATATTGCAAAT
CATTGTAATATATGTAAGCATGTTATTTGTGACACAGTTCTTGATAAAGCATTATGTAATGTTA
ATTTTGTTCATGGATATGGTTTTTCTTTTTTTACAAAAGTATTCTAATTTTAAGGGTTTTTAAA
ATGTTTTTGTCCAGAAAAATTTTTATTCACTACTTTCATTATATTTATGCCTTTTCTACTTGAA
AGTCTATTTAACCCAGTGAAACAAAGAATTATTAAAATTAAATTAAGTTAAAAACTTAAAGGCA
TTATGATGTTTAGTATTAAAATTTGATATTAAAATGTACAGAACTTAGAGAGCAAATCAGTTTT
TTCTAAATGTCAAGTTAAATTATTTGTACTCAGAACTCTTACTAATAAAAAGTTAAAACACACC
ATGA

hide sequence

RefSeq Acc Id:

XM_008766251 ⟹ XP_008764473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,375,025 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,984,271 (-)	NCBI

Sequence:

show sequence

GGCTTAGATAATGTAGGTTCAGGTGGGAGGCTTAAATCCGGGGAGACCTGCGGCTCATCACAAC
CTCACACTCACCGTCCTTTCAGTCACCTTACGAGCCACAAATAGAACCACAGGGCGGTGAGAGA
AGATGCAGAGCGTCCTTCCTCAGGTTGCTGCCCGAGCAGAATGAGCCGACTCCTCCGGATCCCC
GGATTAAGAGCAAATGAAGTGTATCTTGTGTTTACTGGTGTGGACTACAGACATACTGTGAAGA
AAACAAACTGCACATAAATAATTATTACCAGGACACCGAGGCTGCAAAAACATTCTTCAGTACT
TCCACGAATCTGTAAAACGATGTGACTAGAGAGGTCGTTTTTCCAAACAATGGGGGAAAGGGAC
CAAAGTTCAGATACTGATCAAGAAAGAAAAGGAGGCAAACACCCTTACTCGTCCCATTACTCGT
CTGACTTCGGGTCCTCACCACAGTCTTCTGGCCCCTCGTCACCTGTCAACACGCCACCATGTGC
CAGTAATAGGGAGAAGAATCCCAAAAGACACCTGTCAGACCACCACGTGCGCCACCAAACCGTT
AGGAAAGTGAGTCCTAAGGCTATACCCAACAAAAAGGGGGTCCGAGTGGGATTTCGGTCCCAAA
GCCTCAACAGAGAGCCACTTCGGAAAGATCCAGATATCGTAACAAAGAGGGTTCTTTCTGCAAG
ACTTCTGAAAATCACCGAGCTGCAGAATGAAGTGTCTGAACTACAGGTCAAGTTAGCCCAGCTG
CTCAAAGAAAACAAGGCTTTGAAAAGTCTGCAGTATCGTCAGGAGAAAGCACTGAGTAAGTTCG
AAGATGCAGAGAATGAAATCTCACAACTTATACACCGCCATAACGGTGAGATTACTGCGCTCAA
AGAACGCTTAAGAAAATCTCAGGAGAAAGAGCGGATGGCAGAGAAAAGAGTGAAAGACACAGAA
GGGGAACTATTTAGGACGAAATTTTCCCTACAGAAACTAAAAAAGATCTCTGAGGCCAGACACC
TACCGGAGCGAGACGATTTGGCCAAGAAACTAGTTTCAGCAGAGTTAAAATTAGACAACACCGA
GAGAAAGATTAAGGAACTATCGAAGAACCTGGAGCTAAGCACCAACAGCTTCCAGCGGCAGCTG
CTTGCTGAAAGGAAAAGAGCGTTTGAGGCTCACGATGAAAATAAAATTCTCCAAAAGGAGCTGC
AGCGGCTCCACCACAAGCTGAAGGAGAAGGAGAAAGAATTGGATATAAAAAACATCTACGCTAA
TCGCCTGCCCAAGTCCTCTCCAAAGAAAGAGAAAGAAATTGCAAGAAAGCATGCATCCTGCCAG
AGCGACTTTACGGACCTGTGTACAAAAGCAGTACAGACCGCTGAAGACTTTGAGCCGGAAGAGT
TTCCTTTCACAGCACAGACAGTCCTTTGTTATGAAAACAGATGGGACGGGTCAGAATATCTTCC
TTCGTACCTGGAATACCAGGAGCGAAATGAGCATGGGTCAGAGAGTCTAAGCTCAACTTTGGAA
CAAGAAGGAAAGTACAGCGACGACCAGGATTCATGTACTGCAAAGCAGGAGACCGGGAAGTCTG
AATGTGAATGGGAAAGAGAAGAGCTTGATAAGGTGAAAGGCAAGTCATCTTTGCTAGGGAGAAC
AGAGAAGCTGGTGTTAGAAGCTGGAAGTGTCCAAACGGAAAGTTATCAAGCTCAAACGATTGAT
AAATTCCAAGACGAGGCGGAAAGACTAAAGACAGAAATGCTTCTTGCCAAACTGAACGAAATCA
ACAAAGAACTCCAAGATCCCCAGAGCCTCAGCCGACCCCTTTTGCCGTTGCTACCCAACTTCGA
ATCCAAGCTGTACTCTCCAGACAGAAGCCTCAGACCTTACACGTTCTCGGAGTCCTTAGACAGA
TCATTTAATGGACAACATTTGTCAGACATGAGTTTTTTAACTCCCAGGGACGAAGGCCAGAGTC
CAGGACTGATCAGAAGTCCAGCTCCTTCAGATGAGTTCTCATTCGGTAGCTACGTGCCTTCGTT
TGGAAAAACACCAGGAAAGTCAAATCCACCTAGCCAAAAAAATAGCCTTTTAGATTTCCAAAGC
AACATGTCTGAGGGCCTGAGTAAAGACAGTCTAGATTTCATTTCAAGGAAAGAGAAAAAGGCAA
CCCTGATGGAGCAGCTGTTCGGCACCAGCGCCAGCGCCAGCGCCACCAACACCAGCGCCAGCAC
CACCACCAACACCACCACCAACACCAACACCAACACCAACACCAACACCAACACCAACTGCAAT
GTCCCCTCCAAGAGCATTGACTCACATTTCCCTGCTGCCAGCAGAGGTGACTTGGACCCTCTTC
ATTTCCTCTCCGGGGACAGAAGCAGCAGAGTCCGGGAGCCTGATGGTGAAGATGAAGACCTTTT
CCTCAGCGAAGGAAGAAGTTTTAATCCAAATAGACACCGGTTGAAGCACACGAGCACTAAGCCA
ACAGTCACGGCCGTTGACTCTATTGACGAGGACATTGAAGAGGTTACCCTCAGATGACTGACTG
GAGCACACAGAGTATATATATTTTTTCAATTGTAAATATTAAAGTATTTTAATACAGTATTTAT
TATAAACATTTAAACTTTCAATGGTAAAGTAGACTTAGTAGGGAGTAACTTTTAGTGGCTAACG
ATGGCATAATCAAACAGGTAGTACTGTTCCTCAAAGCCGCATTGTAAGAATGCTTTTTTGTTTC
GAAATGAACCCTAAGGAGAGTTGTTGCTGACTGTTCCTCTGTTGTTACGGCTAGGTCTCACTGA
GTTAGCACTGTGGGAAGTTTTACTTCAGTAAATCTCATTTCTTTTCCCTCTCATTTTGATCCAA
CCTCAGTGAGCCCAAGCACTGTTTTTCCCACTGATGGCTAAGTGGAAATGGAGGGTCTCCGGTA
GGATTAAAGACCTCAGTGGCAGACAGCAGTGGGATGTAGGAGCTGTGCCCTTGTCTGAGGTGAC
AGAGCCAAGCCACTCTTGAGTGGTGGTGACAGTAATGTTGGGACTTCATTTTCTTGGAAAACCA
TCCCTGGGGACTTGAGGGTGTTTAGAGGAGTGTGCACTGGGCGGTGACTCCTCAGGAGTAATTG
ATACTCCTCAGTTGCAGGCCCGGAGTCACTCAGTGCTGCCTTGCTGGCCGCGTGCGTGGATACG
GTAGAGCACAGGAGACATGGCTGCCTTAATGGCCTTCCTTTCTGTGGCTGCAGGAGGCTTGGGC
ACAAGCTCAAGGCTGTCCTTCCTCTCCTCTTCTGTACACTCTAAATTCTGGTGACAGGTGAAAG
ATTCCCTACCAAATACGGGCAGTAGAAGAAATGCCAGCCCAACACAATGATTTTCAACTCAATT
ATGTTTCCAGAGTGTTATGTTTGGAAATTTTCATACATATTTTTAATATTTGAACTTGTGCTCA
AACTCAGGAGACAGCAGTGCGATACTCGTGAGTTTGTGATGTTGACACAACTTCACCAAGAAGT
TTTTAGACGTGGGGCTCCTGTCTTTCTGAGTAGATGCGATAGCTTTCTGTTGAAAGGCAAGGTC
CTTCCACTCAGTCCAGGATAGCTGAGGGGCATTTGCTGACTTGGTCTGGCCTGTTGGAGCAGTA
ATGTATCAGCCAAGGAGAAGCATTGCGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGT
GGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGAGCAGTGTGTC
CATTTGTTCACATCTCATGCAAGGCTTAGGGAAGGCGTTCCCATGTTGTCTGGGTTCTTCTGCT
GTTACTTGGTAAGACCTTCCCTGGTCAGTCCTAATTCACGGCTGTACTGCTGTCTTCCCCCTGG
ATTGGGTTCTTGTCATTTTGGGGGAACAAACTCTCCTTAAAGTGCTAAATAATATTTAAAATTT
TTCTCAGGAGAGGACTTTATGAATAAGCATTTACTATATTGCAAATCATTGTAATATATGTAAG
CATGTTATTTGTGACACAGTTCTTGATAAAGCATTATGTAATGTTAATTTTGTTCATGGATATG
GTTTTTCTTTTTTTACAAAAGTATTCTAATTTTAAGGGTTTTTAAAATGTTTTTGTCCAGAAAA
ATTTTTATTCACTACTTTCATTATATTTATGCCTTTTCTACTTGAAAGTCTATTTAACCCAGTG
AAACAAAGAATTATTAAAATTAAATTAAGTTAAAAACTTAAAGGCATTATGATGTTTAGTATTA
AAATTTGATATTAAAATGTACAGAACTTAGAGAGCAAATCAGTTTTTTCTAAATGTCAAGTTAA
ATTATTTGTACTCAGAACTCTTACTAATAAAAAGTTAAAACACACCATGA

hide sequence

RefSeq Acc Id:

XM_008766252 ⟹ XP_008764474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,246,367 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,366,227 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,975,451 (-)	NCBI

Sequence:

show sequence

GTGCAGGAGGTACCAGCTTAGAGGGCGAGGGGCGGGCGGCAGCGGAGAGAAGTGGTCTGCGGCC
GGGGGATGGACTTGATGGGCAAATGAAGTGTATCTTGTGTTTACTGGTGTGGACTACAGACATA
CTGTGAAGAAAACAAACTGCACATAAATAATTATTACCAGGACACCGAGGCTGCAAAAACATTC
TTCAGTACTTCCACGAATCTGTAAAACGATGTGACTAGAGAGGTCGTTTTTCCAAACAATGGGG
GAAAGGGACCAAAGTTCAGATACTGATCAAGAAAGAAAAGGAGGCAAACACCCTTACTCGTCCC
ATTACTCGTCTGACTTCGGGTCCTCACCACAGTCTTCTGGCCCCTCGTCACCTGTCAACACGCC
ACCATGTGCCAGTAATAGGGAGAAGAATCCCAAAAGACACCTGTCAGACCACCACGTGCGCCAC
CAAACCGTTAGGAAAGTGAGTCCTAAGGCTATACCCAACAAAAAGGGGGTCCGAGTGGGATTTC
GGTCCCAAAGCCTCAACAGAGAGCCACTTCGGAAAGATCCAGATATCGTAACAAAGAGGGTTCT
TTCTGCAAGACTTCTGAAAATCACCGAGCTGCAGAATGAAGTGTCTGAACTACAGGTCAAGTTA
GCCCAGCTGCTCAAAGAAAACAAGGCTTTGAAAAGTCTGCAGTATCGTCAGGAGAAAGCACTGA
GTAAGTTCGAAGATGCAGAGAATGAAATCTCACAACTTATACACCGCCATAACGGTGAGATTAC
TGCGCTCAAAGAACGCTTAAGAAAATCTCAGGAGAAAGAGCGGATGGCAGAGAAAAGAGTGAAA
GACACAGAAGGGGAACTATTTAGGACGAAATTTTCCCTACAGAAACTAAAAAAGATCTCTGAGG
CCAGACACCTACCGGAGCGAGACGATTTGGCCAAGAAACTAGTTTCAGCAGAGTTAAAATTAGA
CAACACCGAGAGAAAGATTAAGGAACTATCGAAGAACCTGGAGCTAAGCACCAACAGCTTCCAG
CGGCAGCTGCTTGCTGAAAGGAAAAGAGCGTTTGAGGCTCACGATGAAAATAAAATTCTCCAAA
AGGAGCTGCAGCGGCTCCACCACAAGCTGAAGGAGAAGGAGAAAGAATTGGATATAAAAAACAT
CTACGCTAATCGCCTGCCCAAGTCCTCTCCAAAGAAAGAGAAAGAAATTGCAAGAAAGCATGCA
TCCTGCCAGAGCGACTTTACGGACCTGTGTACAAAAGCAGTACAGACCGCTGAAGACTTTGAGC
CGGAAGAGTTTCCTTTCACAGCACAGACAGTCCTTTGTTATGAAAACAGATGGGACGGGTCAGA
ATATCTTCCTTCGTACCTGGAATACCAGGAGCGAAATGAGCATGGGTCAGAGAGTCTAAGCTCA
ACTTTGGAACAAGAAGGAAAGTACAGCGACGACCAGGATTCATGTACTGCAAAGCAGGAGACCG
GGAAGTCTGAATGTGAATGGGAAAGAGAAGAGCTTGATAAGGTGAAAGGCAAGTCATCTTTGCT
AGGGAGAACAGAGAAGCTGGTGTTAGAAGCTGGAAGTGTCCAAACGGAAAGTTATCAAGCTCAA
ACGATTGATAAATTCCAAGACGAGGCGGAAAGACTAAAGACAGAAATGCTTCTTGCCAAACTGA
ACGAAATCAACAAAGAACTCCAAGATCCCCAGAGCCTCAGCCGACCCCTTTTGCCGTTGCTACC
CAACTTCGAATCCAAGCTGTACTCTCCAGACAGAAGCCTCAGACCTTACACGTTCTCGGAGTCC
TTAGACAGATCATTTAATGGACAACATTTGTCAGACATGAGTTTTTTAACTCCCAGGGACGAAG
GCCAGAGTCCAGGACTGATCAGAAGTCCAGCTCCTTCAGATGAGTTCTCATTCGGTAGCTACGT
GCCTTCGTTTGGAAAAACACCAGGAAAGTCAAATCCACCTAGCCAAAAAAATAGCCTTTTAGAT
TTCCAAAGCAACATGTCTGAGGGCCTGAGTAAAGACAGTCTAGATTTCATTTCAAGGAAAGAGA
AAAAGGCAACCCTGATGGAGCAGCTGTTCGGCACCAGCGCCAGCGCCAGCGCCACCAACACCAG
CGCCAGCACCACCACCAACACCACCACCAACACCAACACCAACACCAACACCAACACCAACACC
AACTGCAATGTCCCCTCCAAGAGCATTGACTCACATTTCCCTGCTGCCAGCAGAGGTGACTTGG
ACCCTCTTCATTTCCTCTCCGGGGACAGAAGCAGCAGAGTCCGGGAGCCTGATGGTGAAGATGA
AGACCTTTTCCTCAGCGAAGGAAGAAGTTTTAATCCAAATAGACACCGGTTGAAGCACACGAGC
ACTAAGCCAACAGTCACGGCCGTTGACTCTATTGACGAGGACATTGAAGAGGTTACCCTCAGAT
GACTGACTGGAGCACACAGAGTATATATATTTTTTCAATTGTAAATATTAAAGTATTTTAATAC
AGTATTTATTATAAACATTTAAACTTTCAATGGTAAAGTAGACTTAGTAGGGAGTAACTTTTAG
TGGCTAACGATGGCATAATCAAACAGGTAGTACTGTTCCTCAAAGCCGCATTGTAAGAATGCTT
TTTTGTTTCGAAATGAACCCTAAGGAGAGTTGTTGCTGACTGTTCCTCTGTTGTTACGGCTAGG
TCTCACTGAGTTAGCACTGTGGGAAGTTTTACTTCAGTAAATCTCATTTCTTTTCCCTCTCATT
TTGATCCAACCTCAGTGAGCCCAAGCACTGTTTTTCCCACTGATGGCTAAGTGGAAATGGAGGG
TCTCCGGTAGGATTAAAGACCTCAGTGGCAGACAGCAGTGGGATGTAGGAGCTGTGCCCTTGTC
TGAGGTGACAGAGCCAAGCCACTCTTGAGTGGTGGTGACAGTAATGTTGGGACTTCATTTTCTT
GGAAAACCATCCCTGGGGACTTGAGGGTGTTTAGAGGAGTGTGCACTGGGCGGTGACTCCTCAG
GAGTAATTGATACTCCTCAGTTGCAGGCCCGGAGTCACTCAGTGCTGCCTTGCTGGCCGCGTGC
GTGGATACGGTAGAGCACAGGAGACATGGCTGCCTTAATGGCCTTCCTTTCTGTGGCTGCAGGA
GGCTTGGGCACAAGCTCAAGGCTGTCCTTCCTCTCCTCTTCTGTACACTCTAAATTCTGGTGAC
AGGTGAAAGATTCCCTACCAAATACGGGCAGTAGAAGAAATGCCAGCCCAACACAATGATTTTC
AACTCAATTATGTTTCCAGAGTGTTATGTTTGGAAATTTTCATACATATTTTTAATATTTGAAC
TTGTGCTCAAACTCAGGAGACAGCAGTGCGATACTCGTGAGTTTGTGATGTTGACACAACTTCA
CCAAGAAGTTTTTAGACGTGGGGCTCCTGTCTTTCTGAGTAGATGCGATAGCTTTCTGTTGAAA
GGCAAGGTCCTTCCACTCAGTCCAGGATAGCTGAGGGGCATTTGCTGACTTGGTCTGGCCTGTT
GGAGCAGTAATGTATCAGCCAAGGAGAAGCATTGCGTGGAACGCGGGTGACCTGTGGAACGCGG
GTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGAG
CAGTGTGTCCATTTGTTCACATCTCATGCAAGGCTTAGGGAAGGCGTTCCCATGTTGTCTGGGT
TCTTCTGCTGTTACTTGGTAAGACCTTCCCTGGTCAGTCCTAATTCACGGCTGTACTGCTGTCT
TCCCCCTGGATTGGGTTCTTGTCATTTTGGGGGAACAAACTCTCCTTAAAGTGCTAAATAATAT
TTAAAATTTTTCTCAGGAGAGGACTTTATGAATAAGCATTTACTATATTGCAAATCATTGTAAT
ATATGTAAGCATGTTATTTGTGACACAGTTCTTGATAAAGCATTATGTAATGTTAATTTTGTTC
ATGGATATGGTTTTTCTTTTTTTACAAAAGTATTCTAATTTTAAGGGTTTTTAAAATGTTTTTG
TCCAGAAAAATTTTTATTCACTACTTTCATTATATTTATGCCTTTTCTACTTGAAAGTCTATTT
AACCCAGTGAAACAAAGAATTATTAAAATTAAATTAAGTTAAAAACTTAAAGGCATTATGATGT
TTAGTATTAAAATTTGATATTAAAATGTACAGAACTTAGAGAGCAAATCAGTTTTTTCTAAATG
TCAAGTTAAATTATTTGTACTCAGAACTCTTACTAATAAAAAGTTAAAACACACCATGA

hide sequence

RefSeq Acc Id:

XM_008766255 ⟹ XP_008764477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,255,038 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,374,985 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,984,271 (-)	NCBI

Sequence:

show sequence

GGCTTAGATAATGTAGGTTCAGGTGGGAGGCTTAAATCCGGGGAGACCTGCGGCTCATCACAAC
CTCACACTCACCGTCCTTTCAGTCACCTTACGAGCCACAAATAGAACCACAGGGCGGTGAGAGA
AGGTAGATCAGACCGCTTGTTCCGCAGATGCAGAGCGTCCTTCCTCAGGTTGCTGCCCGAGCAG
AATGAGCCGACTCCTCCGGATCCCCGGATTAAGAGCAAATGAAGTGTATCTTGTGTTTACTGGT
GTGGACTACAGACATACTGTGAAGAAAACAAACTGCACATAAATAATTATTACCAGGACACCGA
GGCTGCAAAAACATTCTTCAGTACTTCCACGAATCTGTAAAACGATGTGACTAGAGAGGTCGTT
TTTCCAAACAATGGGGGAAAGGGACCAAAGTTCAGATACTGATCAAGAAAGAAAAGGAGGCAAA
CACCCTTACTCGTCCCATTACTCGTCTGACTTCGGGTCCTCACCACAGTCTTCTGGCCCCTCGT
CACCTGTCAACACGCCACCATGTGCCAGTAATAGGGAGAAGAATCCCAAAAGACACCTGTCAGA
CCACCACGTGCGCCACCAAACCGTTAGGAAAGTGAGTCCTAAGGCTATACCCAACAAAAAGGGG
GTCCGAGTGGGATTTCGGTCCCAAAGCCTCAACAGAGAGCCACTTCGGAAAGATCCAGATATCG
TAACAAAGAGGGTTCTTTCTGCAAGACTTCTGAAAATCACCGAGCTGCAGAATGAAGTGTCTGA
ACTACAGGTCAAGTTAGCCCAGCTGCTCAAAGAAAACAAGGCTTTGAAAAGTCTGCAGTATCGT
CAGGAGAAAGCACTGAGTAAGTTCGAAGATGCAGAGAATGAAATCTCACAACTTATACACCGCC
ATAACGGTGAGATTACTGCGCTCAAAGAACGCTTAAGAAAATCTCAGGAGAAAGAGCGGATGGC
AGAGAAAAGAGTGAAAGACACAGAAGGGGAACTATTTAGGACGAAATTTTCCCTACAGAAACTA
AAAAAGATCTCTGAGGCCAGACACCTACCGGAGCGAGACGATTTGGCCAAGAAACTAGTTTCAG
CAGAGTTAAAATTAGACAACACCGAGAGAAAGATTAAGGAACTATCGAAGAACCTGGAGCTAAG
CACCAACAGCTTCCAGCGGCAGCTGCTTGCTGAAAGGAAAAGAGCGTTTGAGGCTCACGATGAA
AATAAAATTCTCCAAAAGGAGCTGCAGCGGCTCCACCACAAGCTGAAGGAGAAGGAGAAAGAAT
TGGATATAAAAAACATCTACGCTAATCGCCTGCCCAAGTCCTCTCCAAAGAAAGAGAAAGAAAT
TGCAAGAAAGCATGCATCCTGCCAGAGCGACTTTACGGACCTGTGTACAAAAGCAGTACAGACC
GCTGAAGACTTTGAGCCGGAAGAGTTTCCTTTCACAGCACAGACAGTCCTTTGTTATGAAAACA
GATGGGACGGGTCAGAATATCTTCCTTCGTACCTGGAATACCAGGAGCGAAATGAGCATGGGTC
AGAGAGTCTAAGCTCAACTTTGGAACAAGAAGGAAAGTACAGCGACGACCAGGATTCATGTACT
GCAAAGCAGGAGACCGGGAAGTCTGAATGTGAATGGGAAAGAGAAGAGCTTGATAAGGTGAAAG
GCAAGTCATCTTTGCTAGGGAGAACAGAGAAGCTGGTGTTAGAAGCTGGAAGTGTCCAAACGGA
AAGTTATCAAGCTCAAACGATTGATAAATTCCAAGACGAGGCGGAAAGACTAAAGACAGAAATG
CTTCTTGCCAAACTGAACGAAATCAACAAAGAACTCCAAGATCCCCAGAGCCTCAGCCGACCCC
TTTTGCCGTTGCTACCCAACTTCGAATCCAAGCTGTACTCTCCAGACAGAAGCCTCAGACCTTA
CACGTTCTCGGAGTCCTTAGACAGATCATTTAATGGACAACATTTGTCAGACATGAGTTTTTTA
ACTCCCAGGGACGAAGGCCAGAGTCCAGGACTGATCAGAAGTCCAGCTCCTTCAGATGAGTTCT
CATTCGGTAGCTACGTGCCTTCGTTTGGAAAAACACCAGGAAAGTCAAATCCACCTAGCCAAAA
AAATAGCCTTTTAGATTTCCAAAGCAACATGTCTGAGGGCCTGAGTAAAGACAGTCTAGATTTC
ATTTCAAGGAAAGAGAAAAAGGCAACCCTGATGGAGCAGCTGTTCGGCACCAGCGCCAGCGCCA
GCGCCACCAACACCAGCGCCAGCACCACCACCAACACCACCACCAACACCAACACCAACACCAA
CACCAACACCAACACCAACTGCAATGTCCCCTCCAAGAGCATTGACTCACATTTCCCTGCTGCC
AGCAGAGGTGACTTGGACCCTCTTCATTTCCTCTCCGGGGACAGAAGCAGCAGAGTCCGGGAGC
CTGATGGTGAAGATGAAGACCTTTTCCTCAGCGAAGGAAGAAGTTTTAATCCAAATAGACACCG
GTTGAAGCACACGAGCACTAAGCCAACAGTCACGGCCGTTGACTCTATTGACGAGGACATTGAA
GAGGTTACCCTCAGATGACTGACTGGAGCACACAGAGTATATATATTTTTTCAATTGTAAATAT
TAAAGTATTTTAATACAGTATTTATTATAAACATTTAAACTTTCAATGGTAAAGTAGACTTAGT
AGGGAGTAACTTTTAGTGGCTAACGATGGCATAATCAAACAGGTAGTACTGTTCCTCAAAGCCG
CATTGTAAGAATGCTTTTTTGTTTCGAAATGAACCCTAAGGAGAGTTGTTGCTGACTGTTCCTC
TGTTGTTACGGCTAGGTCTCACTGAGTTAGCACTGTGGGAAGTTTTACTTCAGTAAATCTCATT
TCTTTTCCCTCTCATTTTGATCCAACCTCAGTGAGCCCAAGCACTGTTTTTCCCACTGATGGCT
AAGTGGAAATGGAGGGTCTCCGGTAGGATTAAAGACCTCAGTGGCAGACAGCAGTGGGATGTAG
GAGCTGTGCCCTTGTCTGAGGTGACAGAGCCAAGCCACTCTTGAGTGGTGGTGACAGTAATGTT
GGGACTTCATTTTCTTGGAAAACCATCCCTGGGGACTTGAGGGTGTTTAGAGGAGTGTGCACTG
GGCGGTGACTCCTCAGGAGTAATTGATACTCCTCAGTTGCAGGCCCGGAGTCACTCAGTGCTGC
CTTGCTGGCCGCGTGCGTGGATACGGTAGAGCACAGGAGACATGGCTGCCTTAATGGCCTTCCT
TTCTGTGGCTGCAGGAGGCTTGGGCACAAGCTCAAGGCTGTCCTTCCTCTCCTCTTCTGTACAC
TCTAAATTCTGGTGACAGGTGAAAGATTCCCTACCAAATACGGGCAGTAGAAGAAATGCCAGCC
CAACACAATGATTTTCAACTCAATTATGTTTCCAGAGTGTTATGTTTGGAAATTTTCATACATA
TTTTTAATATTTGAACTTGTGCTCAAACTCAGGAGACAGCAGTGCGATACTCGTGAGTTTGTGA
TGTTGACACAACTTCACCAAGAAGTTTTTAGACGTGGGGCTCCTGTCTTTCTGAGTAGATGCGA
TAGCTTTCTGTTGAAAGGCAAGGTCCTTCCACTCAGTCCAGGATAGCTGAGGGGCATTTGCTGA
CTTGGTCTGGCCTGTTGGAGCAGTAATGTATCAGCCAAGGAGAAGCATTGCGTGGAACGCGGGT
GACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGA
ACGCGGGTGACCTGAGCAGTGTGTCCATTTGTTCACATCTCATGCAAGGCTTAGGGAAGGCGTT
CCCATGTTGTCTGGGTTCTTCTGCTGTTACTTGGTAAGACCTTCCCTGGTCAGTCCTAATTCAC
GGCTGTACTGCTGTCTTCCCCCTGGATTGGGTTCTTGTCATTTTGGGGGAACAAACTCTCCTTA
AAGTGCTAAATAATATTTAAAATTTTTCTCAGGAGAGGACTTTATGAATAAGCATTTACTATAT
TGCAAATCATTGTAATATATGTAAGCATGTTATTTGTGACACAGTTCTTGATAAAGCATTATGT
AATGTTAATTTTGTTCATGGATATGGTTTTTCTTTTTTTACAAAAGTATTCTAATTTTAAGGGT
TTTTAAAATGTTTTTGTCCAGAAAAATTTTTATTCACTACTTTCATTATATTTATGCCTTTTCT
ACTTGAAAGTCTATTTAACCCAGTGAAACAAAGAATTATTAAAATTAAATTAAGTTAAAAACTT
AAAGGCATTATGATGTTTAGTATTAAAATTTGATATTAAAATGTACAGAACTTAGAGAGCAAAT
CAGTTTTTTCTAAATGTCAAGTTAAATTATTTGTACTCAGAACTCTTACTAATAAAAAGTTAAA
ACACACCATGA

hide sequence

RefSeq Acc Id:

XM_008766256 ⟹ XP_008764478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,246,412 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,366,371 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,975,619 (-)	NCBI

Sequence:

show sequence

CCGCTCCGTTGCCCGGGAGCCGAAGCCGCCGAGCCGCCGCCCGCAGCCGTGGTCCCTACAGTGA
CAAATGAAGTGTATCTTGTGTTTACTGGTGTGGACTACAGACATACTGTGAAGAAAACAAACTG
CACATAAATAATTATTACCAGGACACCGAGGCTGCAAAAACATTCTTCAGTACTTCCACGAATC
TGTAAAACGATGTGACTAGAGAGGTCGTTTTTCCAAACAATGGGGGAAAGGGACCAAAGTTCAG
ATACTGATCAAGAAAGAAAAGGAGGCAAACACCCTTACTCGTCCCATTACTCGTCTGACTTCGG
GTCCTCACCACAGTCTTCTGGCCCCTCGTCACCTGTCAACACGCCACCATGTGCCAGTAATAGG
GAGAAGAATCCCAAAAGACACCTGTCAGACCACCACGTGCGCCACCAAACCGTTAGGAAAGTGA
GTCCTAAGGCTATACCCAACAAAAAGGGGGTCCGAGTGGGATTTCGGTCCCAAAGCCTCAACAG
AGAGCCACTTCGGAAAGATCCAGATATCGTAACAAAGAGGGTTCTTTCTGCAAGACTTCTGAAA
ATCACCGAGCTGCAGAATGAAGTGTCTGAACTACAGGTCAAGTTAGCCCAGCTGCTCAAAGAAA
ACAAGGCTTTGAAAAGTCTGCAGTATCGTCAGGAGAAAGCACTGAGTAAGTTCGAAGATGCAGA
GAATGAAATCTCACAACTTATACACCGCCATAACGGTGAGATTACTGCGCTCAAAGAACGCTTA
AGAAAATCTCAGGAGAAAGAGCGGATGGCAGAGAAAAGAGTGAAAGACACAGAAGGGGAACTAT
TTAGGACGAAATTTTCCCTACAGAAACTAAAAAAGATCTCTGAGGCCAGACACCTACCGGAGCG
AGACGATTTGGCCAAGAAACTAGTTTCAGCAGAGTTAAAATTAGACAACACCGAGAGAAAGATT
AAGGAACTATCGAAGAACCTGGAGCTAAGCACCAACAGCTTCCAGCGGCAGCTGCTTGCTGAAA
GGAAAAGAGCGTTTGAGGCTCACGATGAAAATAAAATTCTCCAAAAGGAGCTGCAGCGGCTCCA
CCACAAGCTGAAGGAGAAGGAGAAAGAATTGGATATAAAAAACATCTACGCTAATCGCCTGCCC
AAGTCCTCTCCAAAGAAAGAGAAAGAAATTGCAAGAAAGCATGCATCCTGCCAGAGCGACTTTA
CGGACCTGTGTACAAAAGCAGTACAGACCGCTGAAGACTTTGAGCCGGAAGAGTTTCCTTTCAC
AGCACAGACAGTCCTTTGTTATGAAAACAGATGGGACGGGTCAGAATATCTTCCTTCGTACCTG
GAATACCAGGAGCGAAATGAGCATGGGTCAGAGAGTCTAAGCTCAACTTTGGAACAAGAAGGAA
AGTACAGCGACGACCAGGATTCATGTACTGCAAAGCAGGAGACCGGGAAGTCTGAATGTGAATG
GGAAAGAGAAGAGCTTGATAAGGTGAAAGGCAAGTCATCTTTGCTAGGGAGAACAGAGAAGCTG
GTGTTAGAAGCTGGAAGTGTCCAAACGGAAAGTTATCAAGCTCAAACGATTGATAAATTCCAAG
ACGAGGCGGAAAGACTAAAGACAGAAATGCTTCTTGCCAAACTGAACGAAATCAACAAAGAACT
CCAAGATCCCCAGAGCCTCAGCCGACCCCTTTTGCCGTTGCTACCCAACTTCGAATCCAAGCTG
TACTCTCCAGACAGAAGCCTCAGACCTTACACGTTCTCGGAGTCCTTAGACAGATCATTTAATG
GACAACATTTGTCAGACATGAGTTTTTTAACTCCCAGGGACGAAGGCCAGAGTCCAGGACTGAT
CAGAAGTCCAGCTCCTTCAGATGAGTTCTCATTCGGTAGCTACGTGCCTTCGTTTGGAAAAACA
CCAGGAAAGTCAAATCCACCTAGCCAAAAAAATAGCCTTTTAGATTTCCAAAGCAACATGTCTG
AGGGCCTGAGTAAAGACAGTCTAGATTTCATTTCAAGGAAAGAGAAAAAGGCAACCCTGATGGA
GCAGCTGTTCGGCACCAGCGCCAGCGCCAGCGCCACCAACACCAGCGCCAGCACCACCACCAAC
ACCACCACCAACACCAACACCAACACCAACACCAACACCAACACCAACTGCAATGTCCCCTCCA
AGAGCATTGACTCACATTTCCCTGCTGCCAGCAGAGGTGACTTGGACCCTCTTCATTTCCTCTC
CGGGGACAGAAGCAGCAGAGTCCGGGAGCCTGATGGTGAAGATGAAGACCTTTTCCTCAGCGAA
GGAAGAAGTTTTAATCCAAATAGACACCGGTTGAAGCACACGAGCACTAAGCCAACAGTCACGG
CCGTTGACTCTATTGACGAGGACATTGAAGAGGTTACCCTCAGATGACTGACTGGAGCACACAG
AGTATATATATTTTTTCAATTGTAAATATTAAAGTATTTTAATACAGTATTTATTATAAACATT
TAAACTTTCAATGGTAAAGTAGACTTAGTAGGGAGTAACTTTTAGTGGCTAACGATGGCATAAT
CAAACAGGTAGTACTGTTCCTCAAAGCCGCATTGTAAGAATGCTTTTTTGTTTCGAAATGAACC
CTAAGGAGAGTTGTTGCTGACTGTTCCTCTGTTGTTACGGCTAGGTCTCACTGAGTTAGCACTG
TGGGAAGTTTTACTTCAGTAAATCTCATTTCTTTTCCCTCTCATTTTGATCCAACCTCAGTGAG
CCCAAGCACTGTTTTTCCCACTGATGGCTAAGTGGAAATGGAGGGTCTCCGGTAGGATTAAAGA
CCTCAGTGGCAGACAGCAGTGGGATGTAGGAGCTGTGCCCTTGTCTGAGGTGACAGAGCCAAGC
CACTCTTGAGTGGTGGTGACAGTAATGTTGGGACTTCATTTTCTTGGAAAACCATCCCTGGGGA
CTTGAGGGTGTTTAGAGGAGTGTGCACTGGGCGGTGACTCCTCAGGAGTAATTGATACTCCTCA
GTTGCAGGCCCGGAGTCACTCAGTGCTGCCTTGCTGGCCGCGTGCGTGGATACGGTAGAGCACA
GGAGACATGGCTGCCTTAATGGCCTTCCTTTCTGTGGCTGCAGGAGGCTTGGGCACAAGCTCAA
GGCTGTCCTTCCTCTCCTCTTCTGTACACTCTAAATTCTGGTGACAGGTGAAAGATTCCCTACC
AAATACGGGCAGTAGAAGAAATGCCAGCCCAACACAATGATTTTCAACTCAATTATGTTTCCAG
AGTGTTATGTTTGGAAATTTTCATACATATTTTTAATATTTGAACTTGTGCTCAAACTCAGGAG
ACAGCAGTGCGATACTCGTGAGTTTGTGATGTTGACACAACTTCACCAAGAAGTTTTTAGACGT
GGGGCTCCTGTCTTTCTGAGTAGATGCGATAGCTTTCTGTTGAAAGGCAAGGTCCTTCCACTCA
GTCCAGGATAGCTGAGGGGCATTTGCTGACTTGGTCTGGCCTGTTGGAGCAGTAATGTATCAGC
CAAGGAGAAGCATTGCGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGG
TGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGAGCAGTGTGTCCATTTGTTCA
CATCTCATGCAAGGCTTAGGGAAGGCGTTCCCATGTTGTCTGGGTTCTTCTGCTGTTACTTGGT
AAGACCTTCCCTGGTCAGTCCTAATTCACGGCTGTACTGCTGTCTTCCCCCTGGATTGGGTTCT
TGTCATTTTGGGGGAACAAACTCTCCTTAAAGTGCTAAATAATATTTAAAATTTTTCTCAGGAG
AGGACTTTATGAATAAGCATTTACTATATTGCAAATCATTGTAATATATGTAAGCATGTTATTT
GTGACACAGTTCTTGATAAAGCATTATGTAATGTTAATTTTGTTCATGGATATGGTTTTTCTTT
TTTTACAAAAGTATTCTAATTTTAAGGGTTTTTAAAATGTTTTTGTCCAGAAAAATTTTTATTC
ACTACTTTCATTATATTTATGCCTTTTCTACTTGAAAGTCTATTTAACCCAGTGAAACAAAGAA
TTATTAAAATTAAATTAAGTTAAAAACTTAAAGGCATTATGATGTTTAGTATTAAAATTTGATA
TTAAAATGTACAGAACTTAGAGAGCAAATCAGTTTTTTCTAAATGTCAAGTTAAATTATTTGTA
CTCAGAACTCTTACTAATAAAAAGTTAAAACACACCATGA

hide sequence

RefSeq Acc Id:

XM_008766257 ⟹ XP_008764479

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,235,025 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,362,303 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,964,584 (-)	NCBI

Sequence:

show sequence

CTATGATGTCATTCTTGCCTTCTACCCTGCACATTTGTTTTAAAGTAATATGAACTGGTCACCT
TATGTTTTTGCTACCAATTTTATATTAGTTACCTCATTTGTTTAATTTCTTAAGGTTTATAGAA
ATTGCTTTAAAAAAATCCCCCCCCCCAAATTATGGTTTCTGAAGTCAAGTCTGTAAACAGTTAT
GTACAAAGGAGGTTGGTGTCTACTCCTGACCTTGAATTCTGCTCTCTCTCCTCCCTAATAGCTA
TTTTTTTCTCTGGTAAGAAAACCCCCAGCAATGTGGCTTTTAAAGCTCAAACTCATTAAAACTA
AATAAGCATTTGATCTTCAGTCATACCAGCGATGTTTTCAGCGCCGTTCCACAGGTTGTCAGCG
ACCTCATAGAACACGGACTGCGGAACTTCACTGATGTGTCTGAGTTCTACTGCATAGCCATACC
CTTGAGAACTCATTTCTTTAAACACCCGATTTATCCTTTTACCTTTTAAAAATAAAAGGTTATT
TATTTTCCTGTCACGTCACAAAATACCCGAACCCAAGCATGTACAAAGAAGAAAGGTTTATTTA
GTTCACAGTTTTGAGATTGGAAACCCAAGATTGGGCAGCTGCAGTTCTGTGGTCTCCTGGGAGG
ACCTCATGGCAAATGATGGAAGCCCTCCGTGGTGGAGATTTCATGCAAATGAAGTGTATCTTGT
GTTTACTGGTGTGGACTACAGACATACTGTGAAGAAAACAAACTGCACATAAATAATTATTACC
AGGACACCGAGGCTGCAAAAACATTCTTCAGTACTTCCACGAATCTGTAAAACGATGTGACTAG
AGAGGTCGTTTTTCCAAACAATGGGGGAAAGGGACCAAAGTTCAGATACTGATCAAGAAAGAAA
AGGAGGCAAACACCCTTACTCGTCCCATTACTCGTCTGACTTCGGGTCCTCACCACAGTCTTCT
GGCCCCTCGTCACCTGTCAACACGCCACCATGTGCCAGTAATAGGGAGAAGAATCCCAAAAGAC
ACCTGTCAGACCACCACGTGCGCCACCAAACCGTTAGGAAAGTGAGTCCTAAGGCTATACCCAA
CAAAAAGGGGGTCCGAGTGGGATTTCGGTCCCAAAGCCTCAACAGAGAGCCACTTCGGAAAGAT
CCAGATATCGTAACAAAGAGGGTTCTTTCTGCAAGACTTCTGAAAATCACCGAGCTGCAGAATG
AAGTGTCTGAACTACAGGTCAAGTTAGCCCAGCTGCTCAAAGAAAACAAGGCTTTGAAAAGTCT
GCAGTATCGTCAGGAGAAAGCACTGAGTAAGTTCGAAGATGCAGAGAATGAAATCTCACAACTT
ATACACCGCCATAACGGTGAGATTACTGCGCTCAAAGAACGCTTAAGAAAATCTCAGGAGAAAG
AGCGGATGGCAGAGAAAAGAGTGAAAGACACAGAAGGGGAACTATTTAGGACGAAATTTTCCCT
ACAGAAACTAAAAAAGATCTCTGAGGCCAGACACCTACCGGAGCGAGACGATTTGGCCAAGAAA
CTAGTTTCAGCAGAGTTAAAATTAGACAACACCGAGAGAAAGATTAAGGAACTATCGAAGAACC
TGGAGCTAAGCACCAACAGCTTCCAGCGGCAGCTGCTTGCTGAAAGGAAAAGAGCGTTTGAGGC
TCACGATGAAAATAAAATTCTCCAAAAGGAGCTGCAGCGGCTCCACCACAAGCTGAAGGAGAAG
GAGAAAGAATTGGATATAAAAAACATCTACGCTAATCGCCTGCCCAAGTCCTCTCCAAAGAAAG
AGAAAGAAATTGCAAGAAAGCATGCATCCTGCCAGAGCGACTTTACGGACCTGTGTACAAAAGC
AGTACAGACCGCTGAAGACTTTGAGCCGGAAGAGTTTCCTTTCACAGCACAGACAGTCCTTTGT
TATGAAAACAGATGGGACGGGTCAGAATATCTTCCTTCGTACCTGGAATACCAGGAGCGAAATG
AGCATGGGTCAGAGAGTCTAAGCTCAACTTTGGAACAAGAAGGAAAGTACAGCGACGACCAGGA
TTCATGTACTGCAAAGCAGGAGACCGGGAAGTCTGAATGTGAATGGGAAAGAGAAGAGCTTGAT
AAGGTGAAAGGCAAGTCATCTTTGCTAGGGAGAACAGAGAAGCTGGTGTTAGAAGCTGGAAGTG
TCCAAACGGAAAGTTATCAAGCTCAAACGATTGATAAATTCCAAGACGAGGCGGAAAGACTAAA
GACAGAAATGCTTCTTGCCAAACTGAACGAAATCAACAAAGAACTCCAAGATCCCCAGAGCCTC
AGCCGACCCCTTTTGCCGTTGCTACCCAACTTCGAATCCAAGCTGTACTCTCCAGACAGAAGCC
TCAGACCTTACACGTTCTCGGAGTCCTTAGACAGATCATTTAATGGACAACATTTGTCAGACAT
GAGTTTTTTAACTCCCAGGGACGAAGGCCAGAGTCCAGGACTGATCAGAAGTCCAGCTCCTTCA
GATGAGTTCTCATTCGGTAGCTACGTGCCTTCGTTTGGAAAAACACCAGGAAAGTCAAATCCAC
CTAGCCAAAAAAATAGCCTTTTAGATTTCCAAAGCAACATGTCTGAGGGCCTGAGTAAAGACAG
TCTAGATTTCATTTCAAGGAAAGAGAAAAAGGCAACCCTGATGGAGCAGCTGTTCGGCACCAGC
GCCAGCGCCAGCGCCACCAACACCAGCGCCAGCACCACCACCAACACCACCACCAACACCAACA
CCAACACCAACACCAACACCAACACCAACTGCAATGTCCCCTCCAAGAGCATTGACTCACATTT
CCCTGCTGCCAGCAGAGGTGACTTGGACCCTCTTCATTTCCTCTCCGGGGACAGAAGCAGCAGA
GTCCGGGAGCCTGATGGTGAAGATGAAGACCTTTTCCTCAGCGAAGGAAGAAGTTTTAATCCAA
ATAGACACCGGTTGAAGCACACGAGCACTAAGCCAACAGTCACGGCCGTTGACTCTATTGACGA
GGACATTGAAGAGGTTACCCTCAGATGACTGACTGGAGCACACAGAGTATATATATTTTTTCAA
TTGTAAATATTAAAGTATTTTAATACAGTATTTATTATAAACATTTAAACTTTCAATGGTAAAG
TAGACTTAGTAGGGAGTAACTTTTAGTGGCTAACGATGGCATAATCAAACAGGTAGTACTGTTC
CTCAAAGCCGCATTGTAAGAATGCTTTTTTGTTTCGAAATGAACCCTAAGGAGAGTTGTTGCTG
ACTGTTCCTCTGTTGTTACGGCTAGGTCTCACTGAGTTAGCACTGTGGGAAGTTTTACTTCAGT
AAATCTCATTTCTTTTCCCTCTCATTTTGATCCAACCTCAGTGAGCCCAAGCACTGTTTTTCCC
ACTGATGGCTAAGTGGAAATGGAGGGTCTCCGGTAGGATTAAAGACCTCAGTGGCAGACAGCAG
TGGGATGTAGGAGCTGTGCCCTTGTCTGAGGTGACAGAGCCAAGCCACTCTTGAGTGGTGGTGA
CAGTAATGTTGGGACTTCATTTTCTTGGAAAACCATCCCTGGGGACTTGAGGGTGTTTAGAGGA
GTGTGCACTGGGCGGTGACTCCTCAGGAGTAATTGATACTCCTCAGTTGCAGGCCCGGAGTCAC
TCAGTGCTGCCTTGCTGGCCGCGTGCGTGGATACGGTAGAGCACAGGAGACATGGCTGCCTTAA
TGGCCTTCCTTTCTGTGGCTGCAGGAGGCTTGGGCACAAGCTCAAGGCTGTCCTTCCTCTCCTC
TTCTGTACACTCTAAATTCTGGTGACAGGTGAAAGATTCCCTACCAAATACGGGCAGTAGAAGA
AATGCCAGCCCAACACAATGATTTTCAACTCAATTATGTTTCCAGAGTGTTATGTTTGGAAATT
TTCATACATATTTTTAATATTTGAACTTGTGCTCAAACTCAGGAGACAGCAGTGCGATACTCGT
GAGTTTGTGATGTTGACACAACTTCACCAAGAAGTTTTTAGACGTGGGGCTCCTGTCTTTCTGA
GTAGATGCGATAGCTTTCTGTTGAAAGGCAAGGTCCTTCCACTCAGTCCAGGATAGCTGAGGGG
CATTTGCTGACTTGGTCTGGCCTGTTGGAGCAGTAATGTATCAGCCAAGGAGAAGCATTGCGTG
GAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGT
GACCTGTGGAACGCGGGTGACCTGAGCAGTGTGTCCATTTGTTCACATCTCATGCAAGGCTTAG
GGAAGGCGTTCCCATGTTGTCTGGGTTCTTCTGCTGTTACTTGGTAAGACCTTCCCTGGTCAGT
CCTAATTCACGGCTGTACTGCTGTCTTCCCCCTGGATTGGGTTCTTGTCATTTTGGGGGAACAA
ACTCTCCTTAAAGTGCTAAATAATATTTAAAATTTTTCTCAGGAGAGGACTTTATGAATAAGCA
TTTACTATATTGCAAATCATTGTAATATATGTAAGCATGTTATTTGTGACACAGTTCTTGATAA
AGCATTATGTAATGTTAATTTTGTTCATGGATATGGTTTTTCTTTTTTTACAAAAGTATTCTAA
TTTTAAGGGTTTTTAAAATGTTTTTGTCCAGAAAAATTTTTATTCACTACTTTCATTATATTTA
TGCCTTTTCTACTTGAAAGTCTATTTAACCCAGTGAAACAAAGAATTATTAAAATTAAATTAAG
TTAAAAACTTAAAGGCATTATGATGTTTAGTATTAAAATTTGATATTAAAATGTACAGAACTTA
GAGAGCAAATCAGTTTTTTCTAAATGTCAAGTTAAATTATTTGTACTCAGAACTCTTACTAATA
AAAAGTTAAAACACACCATGA

hide sequence

RefSeq Acc Id:

XM_008766258 ⟹ XP_008764480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,200,950 - 93,245,516 (-)	NCBI
mRatBN7.2	8	84,320,907 - 84,366,054 (-)	NCBI
Rnor_6.0	8	90,929,553 - 90,972,767 (-)	NCBI

Sequence:

show sequence

TTTGTTTTTTTGTTTTTTTCCTGTTCTGTTCTTAGGCCCTAGCTGACTTGATACAGGGACCAGG
TCACACACTGGGTTCTGGAGTTAAAGGTGTGGCCACTGTGCTCAGTCCTTGCTAAACCACATTT
GCCACTGCCCCTCCTAACCCTCCTGCTCCCCCATCATGCTGTGCTTAACCTCTGGTAATACATG
AAAACAGAAACGGAGCATTGTCTCTGGAAACACTTCCTCCCAGCACCAACCTTGGCTCTCATTT
TACCACCTCTACTTCCTTTTACCCCCAGCAACTGTATTCTGTGGTATTATTTTTCTCTCTCAGC
TCTGAGCTTATTCATGTTGGGGGGGTGGAATCAGGGGGTTTTCACTCATTTTTTTTTTATTTCT
AACTTATCTGATGTGCAGTGCCTGGCACTTGGTGGATGTTGAACAAGAGTCCAGTGGACGAATG
AAGGAACATCCTGTGATGTTTGCATTTGATCCACTACACTTTGGGGACACATACTACAGTTATG
CTTTCATTTGGCTGAGAATTTAAAATGCCTTTTAAAAGAAGCTGACTATGTCGGAGATGTGAAG
GCTAGCGTCTGCTGTGGTCTGACCGGTCGTAGTAAAATCATACTTAAACAGCCAACATAGTTTA
AAAGGTTTTAGTATTTTAAGGTTTTATTTTGAACAAATATAGTTTGATAATGAAAGCAGAAAAG
ATCTTTTGTGAATAAAATAGTTCGTCATCACGTAAATGGAGCGAGGAGACTGTAGGTCTTAGTC
TTTTCCTGCTCTGTGCAAATAGTTCTGCAGTTACGCCTTGGGAGGGGCACCGTGGACCTAACCT
GATCATTCTATACTTTCCTTTCTGAGGAGACCAAACTCCATATTTCCCTGCTTTGCTTTGCTTC
TTTTATTTTTCTTGTCCTGTTGCCTGCCAGAGGCTGAGGTAACCAGGGAGCAATGTTTTATACA
CAGAAACCCAGCACAGGCTTTTGTTAGGCAGTCAGCAAGGCGTCAGTTTTTGAATACTTGGCTC
AGGTGAGCCAGACGATCCCTTTGATAACCCCCACACAGAAGTCTCTACGAAGCTCACTTCAGGA
TCCATGCAAATCTGGGTCTGAAGGAGCCATCACAGCACAGAAGGAACCTTCGCAAATGAAGTGT
ATCTTGTGTTTACTGGTGTGGACTACAGACATACTGTGAAGAAAACAAACTGCACATAAATAAT
TATTACCAGGACACCGAGGCTGCAAAAACATTCTTCAGTACTTCCACGAATCTGTAAAACGATG
TGACTAGAGAGGTCGTTTTTCCAAACAATGGGGGAAAGGGACCAAAGTTCAGATACTGATCAAG
AAAGAAAAGGAGGCAAACACCCTTACTCGTCCCATTACTCGTCTGACTTCGGGTCCTCACCACA
GTCTTCTGGCCCCTCGTCACCTGTCAACACGCCACCATGTGCCAGTAATAGGGAGAAGAATCCC
AAAAGACACCTGTCAGACCACCACGTGCGCCACCAAACCGTTAGGAAAGTGAGTCCTAAGGCTA
TACCCAACAAAAAGGGGGTCCGAGTGGGATTTCGGTCCCAAAGCCTCAACAGAGAGCCACTTCG
GAAAGATCCAGATATCGTAACAAAGAGGGTTCTTTCTGCAAGACTTCTGAAAATCACCGAGCTG
CAGAATGAAGTGTCTGAACTACAGGTCAAGTTAGCCCAGCTGCTCAAAGAAAACAAGGCTTTGA
AAAGTCTGCAGTATCGTCAGGAGAAAGCACTGAGTAAGTTCGAAGATGCAGAGAATGAAATCTC
ACAACTTATACACCGCCATAACGGTGAGATTACTGCGCTCAAAGAACGCTTAAGAAAATCTCAG
GAGAAAGAGCGGATGGCAGAGAAAAGAGTGAAAGACACAGAAGGGGAACTATTTAGGACGAAAT
TTTCCCTACAGAAACTAAAAAAGATCTCTGAGGCCAGACACCTACCGGAGCGAGACGATTTGGC
CAAGAAACTAGTTTCAGCAGAGTTAAAATTAGACAACACCGAGAGAAAGATTAAGGAACTATCG
AAGAACCTGGAGCTAAGCACCAACAGCTTCCAGCGGCAGCTGCTTGCTGAAAGGAAAAGAGCGT
TTGAGGCTCACGATGAAAATAAAATTCTCCAAAAGGAGCTGCAGCGGCTCCACCACAAGCTGAA
GGAGAAGGAGAAAGAATTGGATATAAAAAACATCTACGCTAATCGCCTGCCCAAGTCCTCTCCA
AAGAAAGAGAAAGAAATTGCAAGAAAGCATGCATCCTGCCAGAGCGACTTTACGGACCTGTGTA
CAAAAGCAGTACAGACCGCTGAAGACTTTGAGCCGGAAGAGTTTCCTTTCACAGCACAGACAGT
CCTTTGTTATGAAAACAGATGGGACGGGTCAGAATATCTTCCTTCGTACCTGGAATACCAGGAG
CGAAATGAGCATGGGTCAGAGAGTCTAAGCTCAACTTTGGAACAAGAAGGAAAGTACAGCGACG
ACCAGGATTCATGTACTGCAAAGCAGGAGACCGGGAAGTCTGAATGTGAATGGGAAAGAGAAGA
GCTTGATAAGGTGAAAGGCAAGTCATCTTTGCTAGGGAGAACAGAGAAGCTGGTGTTAGAAGCT
GGAAGTGTCCAAACGGAAAGTTATCAAGCTCAAACGATTGATAAATTCCAAGACGAGGCGGAAA
GACTAAAGACAGAAATGCTTCTTGCCAAACTGAACGAAATCAACAAAGAACTCCAAGATCCCCA
GAGCCTCAGCCGACCCCTTTTGCCGTTGCTACCCAACTTCGAATCCAAGCTGTACTCTCCAGAC
AGAAGCCTCAGACCTTACACGTTCTCGGAGTCCTTAGACAGATCATTTAATGGACAACATTTGT
CAGACATGAGTTTTTTAACTCCCAGGGACGAAGGCCAGAGTCCAGGACTGATCAGAAGTCCAGC
TCCTTCAGATGAGTTCTCATTCGGTAGCTACGTGCCTTCGTTTGGAAAAACACCAGGAAAGTCA
AATCCACCTAGCCAAAAAAATAGCCTTTTAGATTTCCAAAGCAACATGTCTGAGGGCCTGAGTA
AAGACAGTCTAGATTTCATTTCAAGGAAAGAGAAAAAGGCAACCCTGATGGAGCAGCTGTTCGG
CACCAGCGCCAGCGCCAGCGCCACCAACACCAGCGCCAGCACCACCACCAACACCACCACCAAC
ACCAACACCAACACCAACACCAACACCAACACCAACTGCAATGTCCCCTCCAAGAGCATTGACT
CACATTTCCCTGCTGCCAGCAGAGGTGACTTGGACCCTCTTCATTTCCTCTCCGGGGACAGAAG
CAGCAGAGTCCGGGAGCCTGATGGTGAAGATGAAGACCTTTTCCTCAGCGAAGGAAGAAGTTTT
AATCCAAATAGACACCGGTTGAAGCACACGAGCACTAAGCCAACAGTCACGGCCGTTGACTCTA
TTGACGAGGACATTGAAGAGGTTACCCTCAGATGACTGACTGGAGCACACAGAGTATATATATT
TTTTCAATTGTAAATATTAAAGTATTTTAATACAGTATTTATTATAAACATTTAAACTTTCAAT
GGTAAAGTAGACTTAGTAGGGAGTAACTTTTAGTGGCTAACGATGGCATAATCAAACAGGTAGT
ACTGTTCCTCAAAGCCGCATTGTAAGAATGCTTTTTTGTTTCGAAATGAACCCTAAGGAGAGTT
GTTGCTGACTGTTCCTCTGTTGTTACGGCTAGGTCTCACTGAGTTAGCACTGTGGGAAGTTTTA
CTTCAGTAAATCTCATTTCTTTTCCCTCTCATTTTGATCCAACCTCAGTGAGCCCAAGCACTGT
TTTTCCCACTGATGGCTAAGTGGAAATGGAGGGTCTCCGGTAGGATTAAAGACCTCAGTGGCAG
ACAGCAGTGGGATGTAGGAGCTGTGCCCTTGTCTGAGGTGACAGAGCCAAGCCACTCTTGAGTG
GTGGTGACAGTAATGTTGGGACTTCATTTTCTTGGAAAACCATCCCTGGGGACTTGAGGGTGTT
TAGAGGAGTGTGCACTGGGCGGTGACTCCTCAGGAGTAATTGATACTCCTCAGTTGCAGGCCCG
GAGTCACTCAGTGCTGCCTTGCTGGCCGCGTGCGTGGATACGGTAGAGCACAGGAGACATGGCT
GCCTTAATGGCCTTCCTTTCTGTGGCTGCAGGAGGCTTGGGCACAAGCTCAAGGCTGTCCTTCC
TCTCCTCTTCTGTACACTCTAAATTCTGGTGACAGGTGAAAGATTCCCTACCAAATACGGGCAG
TAGAAGAAATGCCAGCCCAACACAATGATTTTCAACTCAATTATGTTTCCAGAGTGTTATGTTT
GGAAATTTTCATACATATTTTTAATATTTGAACTTGTGCTCAAACTCAGGAGACAGCAGTGCGA
TACTCGTGAGTTTGTGATGTTGACACAACTTCACCAAGAAGTTTTTAGACGTGGGGCTCCTGTC
TTTCTGAGTAGATGCGATAGCTTTCTGTTGAAAGGCAAGGTCCTTCCACTCAGTCCAGGATAGC
TGAGGGGCATTTGCTGACTTGGTCTGGCCTGTTGGAGCAGTAATGTATCAGCCAAGGAGAAGCA
TTGCGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAACGCGGGTGACCTGTGGAA
CGCGGGTGACCTGTGGAACGCGGGTGACCTGAGCAGTGTGTCCATTTGTTCACATCTCATGCAA
GGCTTAGGGAAGGCGTTCCCATGTTGTCTGGGTTCTTCTGCTGTTACTTGGTAAGACCTTCCCT
GGTCAGTCCTAATTCACGGCTGTACTGCTGTCTTCCCCCTGGATTGGGTTCTTGTCATTTTGGG
GGAACAAACTCTCCTTAAAGTGCTAAATAATATTTAAAATTTTTCTCAGGAGAGGACTTTATGA
ATAAGCATTTACTATATTGCAAATCATTGTAATATATGTAAGCATGTTATTTGTGACACAGTTC
TTGATAAAGCATTATGTAATGTTAATTTTGTTCATGGATATGGTTTTTCTTTTTTTACAAAAGT
ATTCTAATTTTAAGGGTTTTTAAAATGTTTTTGTCCAGAAAAATTTTTATTCACTACTTTCATT
ATATTTATGCCTTTTCTACTTGAAAGTCTATTTAACCCAGTGAAACAAAGAATTATTAAAATTA
AATTAAGTTAAAAACTTAAAGGCATTATGATGTTTAGTATTAAAATTTGATATTAAAATGTACA
GAACTTAGAGAGCAAATCAGTTTTTTCTAAATGTCAAGTTAAATTATTTGTACTCAGAACTCTT
ACTAATAAAAAGTTAAAACACACCATGA

hide sequence

RefSeq Acc Id:

XM_039081163 ⟹ XP_038937091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,318,882 - 84,375,025 (-)	NCBI

RefSeq Acc Id:

XM_039081164 ⟹ XP_038937092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,318,882 - 84,375,025 (-)	NCBI

RefSeq Acc Id:

XM_039081165 ⟹ XP_038937093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,318,882 - 84,375,025 (-)	NCBI

RefSeq Acc Id:

XM_063265188 ⟹ XP_063121258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,246,360 (-)	NCBI

RefSeq Acc Id:

XM_063265189 ⟹ XP_063121259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,235,025 (-)	NCBI

RefSeq Acc Id:

XM_063265191 ⟹ XP_063121261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,246,429 (-)	NCBI

RefSeq Acc Id:

XM_063265192 ⟹ XP_063121262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,198,925 - 93,246,411 (-)	NCBI

RefSeq Acc Id:

XR_005487787

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,187,735 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,307,696 - 84,375,025 (-)	NCBI

RefSeq Acc Id:

XR_005487788

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,197,700 - 93,255,060 (-)	NCBI
mRatBN7.2	8	84,317,657 - 84,375,025 (-)	NCBI

RefSeq Acc Id:

XR_010053951

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	93,187,735 - 93,255,060 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380846	(Get FASTA)	NCBI Sequence Viewer
	XP_008764471	(Get FASTA)	NCBI Sequence Viewer
	XP_008764473	(Get FASTA)	NCBI Sequence Viewer
	XP_008764474	(Get FASTA)	NCBI Sequence Viewer
	XP_008764477	(Get FASTA)	NCBI Sequence Viewer
	XP_008764478	(Get FASTA)	NCBI Sequence Viewer
	XP_008764479	(Get FASTA)	NCBI Sequence Viewer
	XP_008764480	(Get FASTA)	NCBI Sequence Viewer
	XP_038937091	(Get FASTA)	NCBI Sequence Viewer
	XP_038937092	(Get FASTA)	NCBI Sequence Viewer
	XP_038937093	(Get FASTA)	NCBI Sequence Viewer
	XP_063121258	(Get FASTA)	NCBI Sequence Viewer
	XP_063121259	(Get FASTA)	NCBI Sequence Viewer
	XP_063121261	(Get FASTA)	NCBI Sequence Viewer
	XP_063121262	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83657	(Get FASTA)	NCBI Sequence Viewer
	AAH85805	(Get FASTA)	NCBI Sequence Viewer
	EDL77664	(Get FASTA)	NCBI Sequence Viewer
	EDL77665	(Get FASTA)	NCBI Sequence Viewer
	EDL77666	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046841
	ENSRNOP00000046841.3
	ENSRNOP00000074416
GenBank Protein	Q5U2Y9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_008764473 ⟸ XM_008766251
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764477 ⟸ XM_008766255
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764478 ⟸ XM_008766256
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764471 ⟸ XM_008766249
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764474 ⟸ XM_008766252
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764480 ⟸ XM_008766258
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

RefSeq Acc Id:	XP_008764479 ⟸ XM_008766257
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM2 (UniProtKB/Swiss-Prot), Q5U2Y9 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNTPPCASNREKNPKRHLSDHHV RHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPDIVTKRVLSARLLKITELQNEVSELQV KLAQLLKENKALKSLQYRQEKALSKFEDAENEISQLIHRHNGEITALKERLRKSQEKERMAEKR VKDTEGELFRTKFSLQKLKKISEARHLPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNS FQRQLLAERKRAFEAHDENKILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARK HASCQSDFTDLCTKAVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESL SSTLEQEGKYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQ AQTIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRPYTFS ESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGKSNPPSQKNSL LDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSASTTTNTTTNTNTNTNTNT NTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDGEDEDLFLSEGRSFNPNRHRLKH TSTKPTVTAVDSIDEDIEEVTLR hide sequence

Ensembl Acc Id:

ENSRNOP00000075180 ⟸ ENSRNOT00000090139

Ensembl Acc Id:

ENSRNOP00000046841 ⟸ ENSRNOT00000044931

Ensembl Acc Id:

ENSRNOP00000074416 ⟸ ENSRNOT00000086426

RefSeq Acc Id:	XP_038937093 ⟸ XM_039081165
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K802 (UniProtKB/TrEMBL), A6I1R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937091 ⟸ XM_039081163
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2Y9 (UniProtKB/Swiss-Prot), Q5XIM2 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937092 ⟸ XM_039081164
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2Y9 (UniProtKB/Swiss-Prot), Q5XIM2 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380846 ⟸ NM_001393917
- UniProtKB:	Q5U2Y9 (UniProtKB/Swiss-Prot), Q5XIM2 (UniProtKB/Swiss-Prot), A6I1R3 (UniProtKB/TrEMBL), A0A8L2RA12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121261 ⟸ XM_063265191
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K802 (UniProtKB/TrEMBL), A6I1R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121262 ⟸ XM_063265192
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K802 (UniProtKB/TrEMBL), A6I1R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121258 ⟸ XM_063265188
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K802 (UniProtKB/TrEMBL), A6I1R1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121259 ⟸ XM_063265189
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K802 (UniProtKB/TrEMBL), A6I1R1 (UniProtKB/TrEMBL)

Protein Domains

Lebercilin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2Y9-F1-model_v2	AlphaFold	Q5U2Y9	1-727	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696158

Promoter ID:

EPDNEW_R6677

Type:

multiple initiation site

Name:

Lca5_1

Description:

LCA5, lebercilin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	90,975,602 - 90,975,662	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308555	AgrOrtholog
BioCyc Gene	G2FUF-29692	BioCyc
Ensembl Genes	ENSRNOG00000009580	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000044931	ENTREZGENE
	ENSRNOT00000044931.5	UniProtKB/Swiss-Prot
	ENSRNOT00000086426	ENTREZGENE
IMAGE_CLONE	IMAGE:7112021	IMAGE-MGC_LOAD
InterPro	Lebercilin-like	UniProtKB/Swiss-Prot
	Lebercilin_dom	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93865	IMAGE-MGC_LOAD
NCBI Gene	300866	ENTREZGENE
PANTHER	PTHR16650	UniProtKB/Swiss-Prot
	PTHR16650:SF10	UniProtKB/Swiss-Prot
Pfam	Lebercilin	UniProtKB/Swiss-Prot
PhenoGen	Lca5	PhenoGen
RatGTEx	ENSRNOG00000009580	RatGTEx
UniProt	A0A0G2K802	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2RA12	ENTREZGENE
	A6I1R1	ENTREZGENE, UniProtKB/TrEMBL
	A6I1R3	ENTREZGENE, UniProtKB/TrEMBL
	LCA5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5XIM2	ENTREZGENE
UniProt Secondary	Q5XIM2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Lca5	lebercilin LCA5	Lca5	LCA5, lebercilin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-06-01	Lca5	LCA5, lebercilin	Lca5	Leber congenital amaurosis 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-17	Lca5	Leber congenital amaurosis 5	Lca5	Leber congenital amaurosis 5 (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Lca5	Leber congenital amaurosis 5 (human)	RGD1308555	similar to RIKEN cDNA 4930431B11 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308555	similar to RIKEN cDNA 4930431B11 gene	RGD1308555_predicted	similar to RIKEN cDNA 4930431B11 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308555_predicted	similar to RIKEN cDNA 4930431B11 gene (predicted)	LOC300866_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC300866_predicted	similar to RIKEN cDNA 4930431B11 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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