Brd8 (bromodomain containing 8) - Rat Genome Database

Name: Brd8
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Brd8 (bromodomain containing 8) Rattus norvegicus

Analyze

Symbol:

Brd8

Name:

bromodomain containing 8

RGD ID:

1307003

Description:

Predicted to enable nuclear receptor coactivator activity and nuclear thyroid hormone receptor binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of NuA4 histone acetyltransferase complex; Swr1 complex; and nucleosome. Biomarker of colorectal adenocarcinoma. Orthologous to human BRD8 (bromodomain containing 8); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; methapyrilene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bromodomain-containing protein 8; LOC291691; p120

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BRD8 (bromodomain containing 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Brd8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Brd8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BRD8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BRD8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Brd8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BRD8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BRD8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Brd8 (bromodomain containing 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	BRD8 (bromodomain containing 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Brd8 (bromodomain containing 8)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-59d17.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brd8 (bromodomain containing 8)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Brd8	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F59E12.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	brd8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	26,455,824 - 26,504,106 (-)	NCBI		GRCr8
mRatBN7.2	18	26,204,892 - 26,229,999 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	26,181,732 - 26,229,884 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	26,332,275 - 26,352,626 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	27,095,888 - 27,116,430 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	26,430,791 - 26,451,337 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	27,375,645 - 27,423,989 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	27,398,688 - 27,424,090 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	27,089,007 - 27,137,524 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	27,074,235 - 27,094,586 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	27,100,884 - 27,121,232 (-)	NCBI
Celera	18	25,942,707 - 25,963,058 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 31 (ISO)

colorectal adenocarcinoma (IEP)

endometriosis (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

STING-associated vasculopathy with onset in infancy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calciol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cyproterone acetate (ISO)

dibutyl phthalate (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hydralazine (ISO)

hydrogen peroxide (ISO)

hypochlorous acid (ISO)

ivermectin (ISO)

leflunomide (ISO)

menadione (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

succimer (ISO)

trichloroethene (EXP)

troglitazone (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc sulfate (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to thyroid hormone stimulus (ISO)

positive regulation of double-strand break repair via homologous recombination (ISO)

positive regulation of transcription by RNA polymerase II (IDA,ISO)

regulation of cell cycle (ISO)

Cellular Component

mitochondrion (IEA,ISO)

NuA4 histone acetyltransferase complex (IBA,ISO)

nucleoplasm (ISO)

nucleosome (ISO)

nucleus (ISO)

Swr1 complex (ISO)

Molecular Function

nuclear receptor coactivator activity (ISO)

nuclear thyroid hormone receptor binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

INO80 family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation
5.	The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics.	Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
6.	BRD8 is a potential chemosensitizing target for spindle poisons in colorectal cancer therapy.	Yamada HY and Rao CV, Int J Oncol. 2009 Nov;35(5):1101-9.
7.	Co-activator p120 is increased by gonadotropins in the rat ovary and enhances progesterone receptor activity.	Yoshino M, etal., Reprod Biol Endocrinol. 2006 Oct 3;4:50.

Additional References at PubMed

PMID:14966270	PMID:22082260	PMID:24463511	PMID:33173987

Genomics

Comparative Map Data

Brd8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	26,455,824 - 26,504,106 (-)	NCBI		GRCr8
mRatBN7.2	18	26,204,892 - 26,229,999 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	26,181,732 - 26,229,884 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	26,332,275 - 26,352,626 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	27,095,888 - 27,116,430 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	26,430,791 - 26,451,337 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	27,375,645 - 27,423,989 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	27,398,688 - 27,424,090 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	27,089,007 - 27,137,524 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	27,074,235 - 27,094,586 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	27,100,884 - 27,121,232 (-)	NCBI
Celera	18	25,942,707 - 25,963,058 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

BRD8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	138,139,770 - 138,178,630 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	138,139,770 - 138,178,953 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	137,475,459 - 137,514,319 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	137,503,358 - 137,542,257 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	133,596,763 - 133,635,647 (-)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	132,666,482 - 132,705,356 (-)	NCBI		HuRef
CHM1_1	5	136,908,168 - 136,946,981 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	138,666,102 - 138,704,922 (-)	NCBI		T2T-CHM13v2.0

Brd8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	34,731,668 - 34,757,916 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	34,731,668 - 34,757,654 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	34,598,611 - 34,624,863 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	34,598,615 - 34,624,601 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	34,758,269 - 34,784,464 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	34,723,416 - 34,749,611 (-)	NCBI		MGSCv36	mm8
Celera	18	35,051,227 - 35,077,223 (-)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	18.69	NCBI

Brd8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	2,232,842 - 2,275,875 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	2,232,853 - 2,275,812 (+)	NCBI	ChiLan1.0	ChiLan1.0

BRD8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	133,413,615 - 133,452,773 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	131,553,168 - 131,592,326 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	133,535,321 - 133,557,304 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	139,652,112 - 139,690,468 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	139,652,112 - 139,690,468 (-)	Ensembl	panpan1.1		panPan2

BRD8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	25,793,375 - 25,825,868 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	25,793,668 - 25,825,726 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	24,559,631 - 24,592,299 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	26,645,970 - 26,678,830 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	26,645,978 - 26,678,526 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	25,353,288 - 25,385,951 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	25,176,899 - 25,208,532 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	25,840,328 - 25,872,995 (-)	NCBI		UU_Cfam_GSD_1.0

Brd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	154,249,563 - 154,292,389 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	7,333,907 - 7,362,114 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	7,333,974 - 7,361,855 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRD8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	140,168,636 - 140,202,247 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	140,182,195 - 140,202,247 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	145,866,443 - 145,901,127 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRD8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	40,808,706 - 40,848,696 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	40,827,739 - 40,849,030 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	37,041,518 - 37,063,390 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brd8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	30,961,646 - 30,994,559 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	30,950,790 - 30,994,655 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Brd8
100 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	36
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000048752
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat

Markers in Region

BE107954

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	26,206,274 - 26,206,455 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	27,400,319 - 27,400,499	NCBI	Rnor6.0
Rnor_5.0	18	27,113,691 - 27,113,871	UniSTS	Rnor5.0
RGSC_v3.4	18	27,075,618 - 27,075,798	UniSTS	RGSC3.4
Celera	18	25,944,090 - 25,944,270	UniSTS
RH 3.4 Map	18	367.2	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	33	38	22	19	22	1	1	74	35	41	11	1
Low		10	19	19		19	7	10					7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB180485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000034385 ⟹ ENSRNOP00000033259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,181,732 - 26,229,884 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000048752 ⟹ ENSRNOP00000050917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,204,910 - 26,229,878 (-)	Ensembl
Rnor_6.0 Ensembl	18	27,398,940 - 27,419,281 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087968 ⟹ ENSRNOP00000069953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,204,896 - 26,229,397 (-)	Ensembl
Rnor_6.0 Ensembl	18	27,398,688 - 27,424,090 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101754 ⟹ ENSRNOP00000095490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,204,896 - 26,226,150 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106891 ⟹ ENSRNOP00000095492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,205,081 - 26,229,878 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115227 ⟹ ENSRNOP00000076361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,204,892 - 26,226,150 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118939 ⟹ ENSRNOP00000076647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	26,204,896 - 26,220,245 (-)	Ensembl

RefSeq Acc Id:

NM_001008509 ⟹ NP_001008509

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,499,373 (-)	NCBI
mRatBN7.2	18	26,204,892 - 26,225,244 (-)	NCBI
Rnor_6.0	18	27,398,936 - 27,419,287 (-)	NCBI
Rnor_5.0	18	27,089,007 - 27,137,524 (-)	NCBI
RGSC_v3.4	18	27,074,235 - 27,094,586 (-)	RGD
Celera	18	25,942,707 - 25,963,058 (-)	RGD

Sequence:

show sequence

CTTTTTGGGTTCGAGGTTGCCTCTCCCTGCGTGGATGAGCAACCCCATGTACATGGATTAAAAA
CTTACACCCTCATGCTGTTGCAGCGTGTCAATCTCTGCTCTGTGAGTGGCACTCCTGAGGTATG
GCCACTATGGGGTCTTTCAACAGTAATATCTTTCCGTGTGGTTCCTGGATCAAACTCAGGTTGT
AGGGCTTTTAGAACAAGGGTATCAGTTAGCAGAGCAATCAAGCCCTTTGCTGAACCTGGCCGGC
CTCCAGACTGGTTCTCTCAAAAACATTGTGCTTCTCAGTATTCTGAGCTCTTAGAGACTACTGA
GACTCCAAAACGAAAACGGGGTGAAAAGGGAGAAGTGGTAGAAACTGTTGAAGATGTTATTGTT
CGCAAACTGACTGCTGAGAGAGTTGAGGAACTGAAGAAAGTCATAAAGGAGACACAGGAGAGAT
ACAGGCGTCTGAAAAGAGATGCAGAACTAATTCAAGCCGGGCACATGGACAGCAGACTGGATGA
GCTCTGCAGTGACATTGCAATGAAAAAGAAATTGGAGGAGGAAGAGGCTGAAGTAAAAAGGAAG
GCCACAGATGCTGCATACCAGGCTCGGCAAGCAGTGAAAACACCTCCTCGAAGGTTGCCAACTG
TGATGGTCCGCTCCCCTATAGACTCCGCCTCCCCAGGAGGTGATTATCCACTTGGAGACTTGAC
TCCAACCACTATGGAAGAGGCTACCTCTGGAGTAACCCCTGGGACTTTGCCGAGTACCCCAGTC
ACCTCGTTTCCTGGGATTCCTGACACCCTTCCTCCAGGCTCTGCACCCTTAGAAGCCCCCATGA
CCCCAGTAACAGATGATTCACCCCAGAAAAAGATGCTTGGACAGAAAGCAACTCCACCCCCCTC
CCCTCTGCTGTCAGAGCTCTTGAAGAAGGGCAGCCTCCTGCCTACTAGCCCCAGACTGGTGAAT
GAGAGTGAAATGCCCGTGCCCTCTGGCCATCTGAGCAGCACAGGGGTTCTCCTGGAGGTAGGCG
GGGTTCTTCCCATGATCCATGGTGGGGACATACAGCCAGCAACCAGTGCAGTGGCAGCCTCCCC
CGCTGCCTCAGGTGCTCCCACTCTCTCCCGGCTTTTAGAAGCTGGTCCCACACAGTTCTCCACT
CCTCTTCCTTCCTTCACTACTGTTGCCAGTGAGCCTCCAGTTAAGCTTGTGCCACCCCCTGTAG
AGTCTGTGTCCCAGGCTACCATTGTCATGATGCCTGCGCTGCCAGCACCGTCCTCTGCTCCGGC
TGTCTCCACTCCTGAAAGTGTAGCTCCAGTGAGCCAGCCTGAGCCCTGTGTTCCCCTGGAAGCC
GTGGGGGATCCACAGACTGTGACTGTTTCCATGGATAGCAGTGAAATCTCCATGATCATTAATT
CCATCAAAGAAGAGTGTTTCCGCTCAGGAGTAGCAGAGGCTCCTGGTGGATCAAAGGCTCCAAG
CATAGATGGGAAGGAAGATTTAGATCTGGCTGAAAAGATGGATATTGCTGTGTCTTACACAGGT
GAAGAGTTGGACTTTGAAACAGTTGGAGACATCATTGCCATCATTGAGGACAAGGTGGATGACC
ACCCTGAAGTGCTGGATGTGGCAGCTGTAGAAGCAGCATTGTCGTTCTGTGAAGAAAATGATGA
TCCTCAGTCCCTGCCTGGCCCTTGGGAGCACCCTATCCAGCAGGAGCGGGACAAGCCAGTGCCT
CTTCCAGCACCAGAGATGACAGTCAAACAAGAGAGGCTAGACTTCGAGGAGTCAGAAACCAAAG
GGATCCATGAACTGGTGGACATCAGGGATTCAGGTGTTGAGATAAAGGTGGAACCTACAGAGCC
AGAGCCAGGCATGTCCGGGGCTGAGATCGTAGCTGGAGTTGGTCCAGTCCCAAGTTTGGAGCCA
CCAGAACTCAGGAGTCAAGACTTAGATGAGGAACCTAGAAGTTCTGCAGCTGGAGAGATGGGTG
AGGCAGACGTTTCCAGTGGGAAAGGCGAGGAAAGGCCACTTCCGGCTGTGAAGACAGAGGCGTC
CCCTGAAAGCATGTTGTCTCCATCACATGGCTCAAATCCTATTGAAGATCCTTTAGAGGCAGAG
ACTCAACACAAGTTTGAAATGTCAGACTCATTGAAAGAAGAATCAGGGACTATTTTTGGAAGCC
AGATAAAGGACGCTCCAGGTGAGGAGGAGGAGGAGGATGGAGTCAGTGAAGCAGCTAGCCTGGA
GGAGCCTAAGGAGGAGGATCAAGGCGAAGGCTATTTGTCTGAGATGGACAACGAGCCCCCTGTG
AGCGAAAGCGATGATGGCTTTAGTATACATAATGCCACACTGCAGTCACACACTCTGGGCGACT
CCATCCCGAGCAGCCCCGCCTCCTCGCAGTTTTCCGTGTGCAGTGAAGATCAAGAAGCAATTCA
GGCTCAGAAAATATGGAAGAAAGCCATCATGCTTGTATGGAGAGCTGCAGCCAACCATCGGTAT
GCCAATGTGTTCCTGCAGCCTGTCACAGACGACATAGCTCCTGGCTACCACAGCATTGTGCAGA
GGCCTATGGATTTGTCAACTATAAAGAAAAACATTGAAAACGGACTGATCCGCAGCACAGCCGA
GTTTCAGCGTGATATCATGCTGATGTTCCAGAACGCTGTTATGTACAATAGCTCAGACCATGAT
GTCTACCACATGGCAGTGGAGATGCAGAGAGACGTCTTGGAACAGATCCAGCAATTCTTGGCCA
CACAGTTGATTATGCAAACATCTGAGTCTGGAATCAGTGCTAAAAGTCTCCGGGGGAGAGACTC
TACCCGAAAACAAGATGCTTCAGAGAAGGACAGTGTCCCCATGGGCTCTCCTGCCTTCCTTCTC
TCTCTGTTTGATGGGGGAACCAGGGGCCGCCGCTGTGCCATCGAAGCGGATATGAAGATGAAGA
AGTGAACGCCCGCCCTCTGAGCTGAGCCTGAAGTAGAAATGAGGTGTGGATAGCCTGAGCCCCG
GCTCAGTTCCACACTTGATCTTAGTCAAAAGGCTGAGGAGCAGTGAGTCCAGAAGCGGAGTTAC
AGAAGAGGAGGCTCCCAAGCCACATGACATGAGTTGAGAAAATCTCTCTTCAGAGAGTTGGAGT
AGCGCAGTTGCCTGTTTTAGGGCAGAAATCATGGGCTGTGTTAATGCCCTAACGTGTAACTAGC
AGATTGTAGCTAATTTGTACTGTCTTGTGAAGTGTACAGATTTTTTTTAAATAATAATAAACCT
GTGAAGTGTGTGTATATAACAATCAGAAGGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001414410 ⟹ NP_001401339

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,006 (-)	NCBI
mRatBN7.2	18	26,204,892 - 26,229,878 (-)	NCBI

RefSeq Acc Id:

XM_006254564 ⟹ XP_006254626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,014 (-)	NCBI
mRatBN7.2	18	26,204,892 - 26,229,999 (-)	NCBI
Rnor_6.0	18	27,398,936 - 27,423,989 (-)	NCBI
Rnor_5.0	18	27,089,007 - 27,137,524 (-)	NCBI

Sequence:

show sequence

ACCCACATTACCCACGAGGCACCGCGAACGGACTCATACAGTTTTTCCCAGAGTTCCTCGCGTC
TGTCGCAATCGTTGAAGACGTCGGAGCCAAAATGGCGACCGGGACAGGCAAGCACAAGCTGCTG
AGTACTGGCCCGACAGAACCATGGTCCATCCGAGAGAAGTTGTGTTTAGCATCTTCTGTTATGA
GGAGTGGGGATCAGAACTGGGTATCAGTTAGCAGAGCAATCAAGCCCTTTGCTGAACCTGGCCG
GCCTCCAGACTGGTTCTCTCAAAAACATTGTGCTTCTCAGTATTCTGAGCTCTTAGAGACTACT
GAGACTCCAAAACGAAAACGGGGTGAAAAGGGAGAAGTGGTAGAAACTGTTGAAGATGTTATTG
TTCGCAAACTGACTGCTGAGAGAGTTGAGGAACTGAAGAAAGTCATAAAGGAGACACAGGAGAG
ATACAGGCGTCTGAAAAGAGATGCAGAACTAATTCAAGCCGGGCACATGGACAGCAGACTGGAT
GAGCTCTGCAGTGACATTGCAATGAAAAAGAAATTGGAGGAGGAAGAGGCTGAAGTAAAAAGGA
AGGCCACAGATGCTGCGTACCAGGCTCGGCAAGCAGTGAAAACACCTCCTCGAAGGTTGCCAAC
TGTGATGGTCCGCTCCCCTATAGACTCCGCCTCCCCAGGAGGTGATTATCCACTTGGAGACTTG
ACTCCAACCACTATGGAAGAGGCTACCTCTGGAGTGAATGAGAGTGAAATGCCCGTGCCCTCTG
GCCATCTGAGCAGCACAGGGGTTCTCCTGGAGGTAGGCGGGGTTCTTCCCATGATCCATGGTGG
GGACATACAGCCAGCAACCAGTGCAGTGGCAGCCTCCCCCGCTGCCTCAGGTGCTCCCACTCTC
TCTCGGCTTTTAGAAGCTGGTCCCACACAGTTCTCCACTCCTCTTCCTTCCTTCACTACTGTTG
CCAGTGAGCCTCCAGTTAAGCTTGTGCCACCCCCTGTAGAGTCTGTGTCCCAGGCTACCATTGT
CATGATGCCTGCGCTGCCAGCACCGTCCTCTGCTCCGGCTGTCTCCACTCCTGAAAGTGTAGCT
CCAGTGAGCCAGCCTGAGCCCTGTGTTCCCCTGGAAGCCGTGGGGGATCCACAGACTGTGACTG
TTTCCATGGATAGCAGTGAAATCTCCATGATCATTAATTCCATCAAAGAAGAGTGTTTCCGCTC
AGGAGTAGCAGAGGCTCCTGGTGGATCAAAGGCTCCAAGCATAGATGGGAAGGAAGATTTAGAT
CTGGCTGAAAAGATGGATATTGCTGTGTCTTACACAGGTGAAGAGTTGGACTTTGAAACAGTTG
GAGACATCATTGCCATCATTGAGGACAAGGTGGATGACCACCCTGAAGTGCTGGATGTGGCAGC
TGTAGAAGCAGCATTGTCGTTCTGTGAAGAAAATGATGATCCTCAGTCCCTGCCTGGCCCTTGG
GAGCACCCTATCCAGCAGGAGCGGGACAAGCCAGTGCCTCTTCCAGCACCAGAGATGACAGTCA
AACAAGAGAGGCTAGACTTCGAGGAGTCAGAAACCAAAGGGATCCATGAACTGGTGGACATCAG
GGATTCAGGTGTTGAGATAAAGGTGGAACCTACAGAGCCAGAGCCAGGCATGTCCGGGGCTGAG
ATCGTAGCTGGAGTTGGTCCAGTCCCAAGTTTGGAGCCACCAGAACTCAGGAGTCAAGACTTAG
ATGAGGAACCTAGAAGTTCTGCAGCTGGAGAGATGGGTGAGGCAGACGGTTCCAGTGGGAAAGG
CGAGGAAAGGCCACTTCCGGCTGTGAAGACAGAGGCGTCCCCTGAAAGCATGTTGTCTCCATCA
CATGGCTCAAATCCTATTGAAGATCCTTTAGAGGCAGAGACTCAACACAAGTTTGAAATGTCAG
ACTCATTGAAAGAAGAATCAGGGACTATTTTTGGAAGCCAGATAAAGGACGCTCCAGGTGAGGA
GGAGGAGGAGGATGGAGTCAGTGAAGCAGCTAGCCTGGAGGAGCCTAAGGAGGAGGATCAAGGC
GAAGGCTATTTGTCTGAGATGGACAACGAGCCCCCTGTGAGCGAAAGCGATGATGGCTTTAGTA
TACATAATGCCACACTGCAGTCACACACTCTGGGCGACTCCATCCCGAGCAGCCCCGCCTCCTC
GCAGTTTTCCGTGTGCAGTGAAGATCAAGAAGCAATTCAGGCTCAGAAAATATGGAAGAAAGCC
ATCATGCTTGTATGGAGAGCTGCAGCCAACCATCGGTATGCCAATGTGTTCCTGCAGCCTGTCA
CAGACGACATAGCTCCTGGCTACCACAGCATTGTGCAGAGGCCTATGGATTTGTCAACTATAAA
GAAAAACATTGAAAACGGACTGATCCGCAGCACAGCCGAGTTTCAGCGTGATATCATGCTGATG
TTCCAGAACGCTGTTATGTACAATAGCTCAGACCATGATGTCTACCACATGGCAGTGGAGATGC
AGAGAGACGTCTTGGAACAGATCCAGCAATTCTTGGCCACACAGTTGATTATGCAAACATCTGA
GTCTGGAATCAGTGCTAAAAGTCTCCGGGGGAGAGACTCTACCCGAAAACAAGATGCTTCAGAG
AAGGACAGTGTCCCCATGGGCTCTCCTGCCTTCCTTCTCTCTCTGTTTGATGGGGGAACCAGGG
GCCGCCGCTGTGCCATCGAAGCGGATATGAAGATGAAGAAGTGAGCGCCCGCCCTCTGAGCTGA
GCCTGAAGTAGAAATGAGGTGTGGATAGCCTGAGCCCCGGCTCAGTTCCACACTTGATCTTAGT
CAAAAGGCTGAGGAGCAGTGAGTCCAGAAGCGGAGTTACAGAAGAGGAGGCTCCCAAGCCACAT
GACATGAGTTGAGAAAATCTCTCTTCAGAGAGTTGGAGTAGCGCAGTTGCCTGTTTTAGGGCAG
AAATCATGGGCTGTGTTAATGCCCTAACGTGTAACTAGCAGATTGTAGCTAATTTGTACTGTCT
TGTGAAGTGTACAGATTTTTTTTAAATAATAATAAACCTGTGAAGTGTGTGTATATAACAATCA
GAAGGAAAA

hide sequence

RefSeq Acc Id:

XM_017600912 ⟹ XP_017456401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,014 (-)	NCBI
mRatBN7.2	18	26,204,892 - 26,229,999 (-)	NCBI
Rnor_6.0	18	27,397,929 - 27,423,989 (-)	NCBI

Sequence:

show sequence

ACCCACATTACCCACGAGGCACCGCGAACGGACTCATACAGTTTTTCCCAGAGTTCCTCGCGTC
TGTCGCAATCGTTGAAGACGTCGGAGCCAAAATGGCGACCGGGACAGGCAAGCACAAGCTGCTG
AGTACTGGCCCGACAGAACCATGGTCCATCCGAGAGAAGTTGTGTTTAGCATCTTCTGTTATGA
GGAGTGGGGATCAGAACTGGGTATCAGTTAGCAGAGCAATCAAGCCCTTTGCTGAACCTGGCCG
GCCTCCAGACTGGTTCTCTCAAAAACATTGTGCTTCTCAGTATTCTGAGCTCTTAGAGACTACT
GAGACTCCAAAACGAAAACGGGGTGAAAAGGGAGAAGTGGTAGAAACTGTTGAAGATGTTATTG
TTCGCAAACTGACTGCTGAGAGAGTTGAGGAACTGAAGAAAGTCATAAAGGAGACACAGGAGAG
ATACAGGCGTCTGAAAAGAGATGCAGAACTAATTCAAGCCGGGCACATGGACAGCAGACTGGAT
GAGCTCTGCAGTGACATTGCAATGAAAAAGAAATTGGAGGAGGAAGAGGCTGAAGTAAAAAGGA
AGGCCACAGATGCTGCGTACCAGGCTCGGCAAGCAGTGAAAACACCTCCTCGAAGGTTGCCAAC
TGTGATGGTCCGCTCCCCTATAGACTCCGCCTCCCCAGGAGGTGATTATCCACTTGGAGACTTG
ACTCCAACCACTATGGAAGAGGCTACCTCTGGAGTAACCCCTGGGACTTTGCCGAGTACCCCAG
TCACCTCGTTTCCTGGGATTCCTGACACCCTTCCTCCAGGCTCTGCACCCTTAGAAGCCCCCAT
GACCCCAGTAACAGATGATTCACCCCAGAAAAAGATGCTTGGACAGAAAGCAACTCCACCCCCC
TCCCCTCTGCTGTCAGAGCTCTTGAAGAAGGGCAGCCTCCTGCCTACTAGCCCCAGACTGGTGA
ATGAGAGTGAAATGCCCGTGCCCTCTGGCCATCTGAGCAGCACAGGGGTTCTCCTGGAGGTAGG
CGGGGTTCTTCCCATGATCCATGGTGGGGACATACAGCCAGCAACCAGTGCAGTGGCAGCCTCC
CCCGCTGCCTCAGTGAGCCAGCCTGAGCCCTGTGTTCCCCTGGAAGCCGTGGGGGATCCACAGA
CTGTGACTGTTTCCATGGATAGCAGTGAAATCTCCATGATCATTAATTCCATCAAAGAAGAGTG
TTTCCGCTCAGGAGTAGCAGAGGCTCCTGGTGGATCAAAGGCTCCAAGCATAGATGGGAAGGAA
GATTTAGATCTGGCTGAAAAGATGGATATTGCTGTGTCTTACACAGGTGAAGAGTTGGACTTTG
AAACAGTTGGAGACATCATTGCCATCATTGAGGACAAGGTGGATGACCACCCTGAAGTGCTGGA
TGTGGCAGCTGTAGAAGCAGCATTGTCGTTCTGTGAAGAAAATGATGATCCTCAGTCCCTGCCT
GGCCCTTGGGAGCACCCTATCCAGCAGGAGCGGGACAAGCCAGTGCCTCTTCCAGCACCAGAGA
TGACAGTCAAACAAGAGAGGCTAGACTTCGAGGAGTCAGAAACCAAAGGGATCCATGAACTGGT
GGACATCAGGGATTCAGGTGTTGAGATAAAGGTGGAACCTACAGAGCCAGAGCCAGGCATGTCC
GGGGCTGAGATCGTAGCTGGAGTTGGTCCAGTCCCAAGTTTGGAGCCACCAGAACTCAGGAGTC
AAGACTTAGATGAGGAACCTAGAAGTTCTGCAGCTGGAGAGATGGGTGAGGCAGACGGTTCCAG
TGGGAAAGGCGAGGAAAGGCCACTTCCGGCTGTGAAGACAGAGGCGTCCCCTGAAAGCATGTTG
TCTCCATCACATGGCTCAAATCCTATTGAAGATCCTTTAGAGGCAGAGACTCAACACAAGTTTG
AAATGTCAGACTCATTGAAAGAAGAATCAGGGACTATTTTTGGAAGCCAGATAAAGGACGCTCC
AGGTGAGGAGGAGGAGGAGGATGGAGTCAGTGAAGCAGCTAGCCTGGAGGAGCCTAAGGAGGAG
GATCAAGGCGAAGGCTATTTGTCTGAGATGGACAACGAGCCCCCTGTGAGCGAAAGCGATGATG
GCTTTAGTATACATAATGCCACACTGCAGTCACACACTCTGGGCGACTCCATCCCGAGCAGCCC
CGCCTCCTCGCAGTTTTCCGTGTGCAGTGAAGATCAAGAAGCAATTCAGGCTCAGAAAATATGG
AAGAAAGCCATCATGCTTGTATGGAGAGCTGCAGCCAACCATCGGTATGCCAATGTGTTCCTGC
AGCCTGTCACAGACGACATAGCTCCTGGCTACCACAGCATTGTGCAGAGGCCTATGGATTTGTC
AACTATAAAGAAAAACATTGAAAACGGACTGATCCGCAGCACAGCCGAGTTTCAGCGTGATATC
ATGCTGATGTTCCAGAACGCTGTTATGTACAATAGCTCAGACCATGATGTCTACCACATGGCAG
TGGAGATGCAGAGAGACGTCTTGGAACAGATCCAGCAATTCTTGGCCACACAGTTGATTATGCA
AACATCTGAGTCTGGAATCAGTGCTAAAAGTCTCCGGGGGAGAGACTCTACCCGAAAACAAGAT
GCTTCAGAGAAGGATGGGGGAACCAGGGGCCGCCGCTGTGCCATCGAAGCGGATATGAAGATGA
AGAAGTGAGCGCCCGCCCTCTGAGCTGAGCCTGAAGTAGAAATGAGGTGTGGATAGCCTGAGCC
CCGGCTCAGTTCCACACTTGATCTTAGTCAAAAGGCTGAGGAGCAGTGAGTCCAGAAGCGGAGT
TACAGAAGAGGAGGCTCCCAAGCCACATGACATGAGTTGAGAAAATCTCTCTTCAGAGAGTTGG
AGTAGCGCAGTTGCCTGTTTTAGGGCAGAAATCATGGGCTGTGTTAATGCCCTAACGTGTAACT
AGCAGATTGTAGCTAATTTGTACTGTCTTGTGAAGTGTACAGATTTTTTTTAAATAATAATAAA
CCTGTGAAGTGTGTGTATATAACAATCAGAAGGAAAACTCTGGCCTTTGGTGTGTCCTTTGTGT
TTGAGATGTGTTTTCTTTACCGTGATAACTGAGTGTATATGGGATAAGATTGTTAGAGCTCAGA
AGTAGTCCATAAGCTGCCTGCTATGACTGACCAGAGGTAAGTAACCAAGACCAAAGCCGTAATT
AGTGTTTTTAAAGGGCTTAATTGTGAAAAAAGGACTGTTTGACTGTTTTCCGGAGTCTTCTTGA
ATGTTTGGGAAACATTAAGGTTTTCGGGTCTGGCTCTGTTTCTTGGAATTAGAGCATGGACAAA
GGTAGCGGTCTGTCAGTCCTGTTTTAGGACAGTGCTGTCTTTGCCCATGCTATCCATGTTTCTA
GAGGTAGAACGCCTGTCCAGCACTAATTTAGTTATTTGGAGGTGGAGTCTCCCTTTTTTGATAA
GGCTAGCCTAGAGCTCAAAAATTTTCAATTTGAACTTTCAATTGCTTAGATTACAGGTGTGTGC
ACCACACTGGGCCAAGAGTGCTTAAAAAACAAACAAATGCAAGGTTAATCTCTGAGGGTTATTA
AGTTTGGGGAATGTGTTTTGGTACAATGGTGTAATGGTACAGCTCTTGGCTAGTTTCCTTGTCA
ATTACTGGGAGAAAGAAATTACTTGAAAACAACATGGAGACACCAATAGTCCCAGCACTTGGAA
AACTGAGGCAAAAGGATGACTGACAGTTTGAAGCTAGCCTAGGCTACAGAGGGAGCCATTATCT
CAAAACACTGTATTAGTGTGGCTGCATAGTGTCTCAGTGGGTTCAGACACCTGCTAACATGCCT
GACCGCCTGAGTCTGATCTCTGAAATCCACATGGTGGGAGGAAAGAACTGATTCCTGCAAGGTG
GACTCTGACCTCCCATGCATAGTGGCATGTGCATTCTCATATATATACGTGTATGTGTGCACAC
ACAAATGTAATTGAATTTTTTAAATGTGTTAATATCTCAGTTCTAATTTCTGTTATTAAATAAA
AAATTGGTTCAGTGGTGAAA

hide sequence

RefSeq Acc Id:

XM_039096725 ⟹ XP_038952653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,014 (-)	NCBI
mRatBN7.2	18	26,204,892 - 26,229,999 (-)	NCBI

RefSeq Acc Id:

XM_063277223 ⟹ XP_063133293

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,455,824 - 26,504,014 (-)	NCBI

RefSeq Acc Id:

XM_063277224 ⟹ XP_063133294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,455,824 - 26,504,014 (-)	NCBI

RefSeq Acc Id:

XM_063277225 ⟹ XP_063133295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,455,824 - 26,504,106 (-)	NCBI

RefSeq Acc Id:

XM_063277226 ⟹ XP_063133296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,500,055 (-)	NCBI

RefSeq Acc Id:

XM_063277227 ⟹ XP_063133297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,500,055 (-)	NCBI

RefSeq Acc Id:

XM_063277228 ⟹ XP_063133298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,014 (-)	NCBI

RefSeq Acc Id:

XM_063277229 ⟹ XP_063133299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,479,022 - 26,504,014 (-)	NCBI

RefSeq Acc Id:

XM_063277230 ⟹ XP_063133300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,484,219 - 26,500,055 (-)	NCBI

RefSeq Acc Id:

XM_063277231 ⟹ XP_063133301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,484,203 - 26,500,055 (-)	NCBI

RefSeq Acc Id:

XM_063277232 ⟹ XP_063133302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,484,219 - 26,504,014 (-)	NCBI

RefSeq Acc Id:

XM_063277233 ⟹ XP_063133303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,455,824 - 26,484,665 (-)	NCBI

RefSeq Acc Id:

XM_063277234 ⟹ XP_063133304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	26,455,824 - 26,485,461 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008509	(Get FASTA)	NCBI Sequence Viewer
	NP_001401339	(Get FASTA)	NCBI Sequence Viewer
	XP_006254626	(Get FASTA)	NCBI Sequence Viewer
	XP_017456401	(Get FASTA)	NCBI Sequence Viewer
	XP_038952653	(Get FASTA)	NCBI Sequence Viewer
	XP_063133293	(Get FASTA)	NCBI Sequence Viewer
	XP_063133294	(Get FASTA)	NCBI Sequence Viewer
	XP_063133295	(Get FASTA)	NCBI Sequence Viewer
	XP_063133296	(Get FASTA)	NCBI Sequence Viewer
	XP_063133297	(Get FASTA)	NCBI Sequence Viewer
	XP_063133298	(Get FASTA)	NCBI Sequence Viewer
	XP_063133299	(Get FASTA)	NCBI Sequence Viewer
	XP_063133300	(Get FASTA)	NCBI Sequence Viewer
	XP_063133301	(Get FASTA)	NCBI Sequence Viewer
	XP_063133302	(Get FASTA)	NCBI Sequence Viewer
	XP_063133303	(Get FASTA)	NCBI Sequence Viewer
	XP_063133304	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAD72893	(Get FASTA)	NCBI Sequence Viewer
	EDL76231	(Get FASTA)	NCBI Sequence Viewer
	EDL76232	(Get FASTA)	NCBI Sequence Viewer
	EDL76233	(Get FASTA)	NCBI Sequence Viewer
	EDL76234	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033259.6
	ENSRNOP00000050917
	ENSRNOP00000050917.3
	ENSRNOP00000069953
	ENSRNOP00000069953.2
	ENSRNOP00000076361.1
	ENSRNOP00000076647.1
	ENSRNOP00000095490
	ENSRNOP00000095490.1
	ENSRNOP00000095492
	ENSRNOP00000095492.1

RefSeq Acc Id:	NP_001008509 ⟸ NM_001008509
- Peptide Label:	isoform 2
- UniProtKB:	Q5TLG7 (UniProtKB/TrEMBL), A0A8I6ATL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLQRVNLCSVSGTPEVWPLWGLSTVISFRVVPGSNSGCRAFRTRVSVSRAIKPFAEPGRPPDW FSQKHCASQYSELLETTETPKRKRGEKGEVVETVEDVIVRKLTAERVEELKKVIKETQERYRRL KRDAELIQAGHMDSRLDELCSDIAMKKKLEEEEAEVKRKATDAAYQARQAVKTPPRRLPTVMVR SPIDSASPGGDYPLGDLTPTTMEEATSGVTPGTLPSTPVTSFPGIPDTLPPGSAPLEAPMTPVT DDSPQKKMLGQKATPPPSPLLSELLKKGSLLPTSPRLVNESEMPVPSGHLSSTGVLLEVGGVLP MIHGGDIQPATSAVAASPAASGAPTLSRLLEAGPTQFSTPLPSFTTVASEPPVKLVPPPVESVS QATIVMMPALPAPSSAPAVSTPESVAPVSQPEPCVPLEAVGDPQTVTVSMDSSEISMIINSIKE ECFRSGVAEAPGGSKAPSIDGKEDLDLAEKMDIAVSYTGEELDFETVGDIIAIIEDKVDDHPEV LDVAAVEAALSFCEENDDPQSLPGPWEHPIQQERDKPVPLPAPEMTVKQERLDFEESETKGIHE LVDIRDSGVEIKVEPTEPEPGMSGAEIVAGVGPVPSLEPPELRSQDLDEEPRSSAAGEMGEADV SSGKGEERPLPAVKTEASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKD APGEEEEEDGVSEAASLEEPKEEDQGEGYLSEMDNEPPVSESDDGFSIHNATLQSHTLGDSIPS SPASSQFSVCSEDQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVQRPMD LSTIKKNIENGLIRSTAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQIQQFLATQLI MQTSESGISAKSLRGRDSTRKQDASEKDSVPMGSPAFLLSLFDGGTRGRRCAIEADMKMKK hide sequence

RefSeq Acc Id:	XP_006254626 ⟸ XM_006254564
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2JWN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGTGKHKLLSTGPTEPWSIREKLCLASSVMRSGDQNWVSVSRAIKPFAEPGRPPDWFSQKHC ASQYSELLETTETPKRKRGEKGEVVETVEDVIVRKLTAERVEELKKVIKETQERYRRLKRDAEL IQAGHMDSRLDELCSDIAMKKKLEEEEAEVKRKATDAAYQARQAVKTPPRRLPTVMVRSPIDSA SPGGDYPLGDLTPTTMEEATSGVNESEMPVPSGHLSSTGVLLEVGGVLPMIHGGDIQPATSAVA ASPAASGAPTLSRLLEAGPTQFSTPLPSFTTVASEPPVKLVPPPVESVSQATIVMMPALPAPSS APAVSTPESVAPVSQPEPCVPLEAVGDPQTVTVSMDSSEISMIINSIKEECFRSGVAEAPGGSK APSIDGKEDLDLAEKMDIAVSYTGEELDFETVGDIIAIIEDKVDDHPEVLDVAAVEAALSFCEE NDDPQSLPGPWEHPIQQERDKPVPLPAPEMTVKQERLDFEESETKGIHELVDIRDSGVEIKVEP TEPEPGMSGAEIVAGVGPVPSLEPPELRSQDLDEEPRSSAAGEMGEADGSSGKGEERPLPAVKT EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEEEEEDGVSEAA SLEEPKEEDQGEGYLSEMDNEPPVSESDDGFSIHNATLQSHTLGDSIPSSPASSQFSVCSEDQE AIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRS TAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQIQQFLATQLIMQTSESGISAKSLRG RDSTRKQDASEKDSVPMGSPAFLLSLFDGGTRGRRCAIEADMKMKK hide sequence

RefSeq Acc Id:	XP_017456401 ⟸ XM_017600912
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2JWN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGTGKHKLLSTGPTEPWSIREKLCLASSVMRSGDQNWVSVSRAIKPFAEPGRPPDWFSQKHC ASQYSELLETTETPKRKRGEKGEVVETVEDVIVRKLTAERVEELKKVIKETQERYRRLKRDAEL IQAGHMDSRLDELCSDIAMKKKLEEEEAEVKRKATDAAYQARQAVKTPPRRLPTVMVRSPIDSA SPGGDYPLGDLTPTTMEEATSGVTPGTLPSTPVTSFPGIPDTLPPGSAPLEAPMTPVTDDSPQK KMLGQKATPPPSPLLSELLKKGSLLPTSPRLVNESEMPVPSGHLSSTGVLLEVGGVLPMIHGGD IQPATSAVAASPAASVSQPEPCVPLEAVGDPQTVTVSMDSSEISMIINSIKEECFRSGVAEAPG GSKAPSIDGKEDLDLAEKMDIAVSYTGEELDFETVGDIIAIIEDKVDDHPEVLDVAAVEAALSF CEENDDPQSLPGPWEHPIQQERDKPVPLPAPEMTVKQERLDFEESETKGIHELVDIRDSGVEIK VEPTEPEPGMSGAEIVAGVGPVPSLEPPELRSQDLDEEPRSSAAGEMGEADGSSGKGEERPLPA VKTEASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEEEEEDGVS EAASLEEPKEEDQGEGYLSEMDNEPPVSESDDGFSIHNATLQSHTLGDSIPSSPASSQFSVCSE DQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGL IRSTAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQIQQFLATQLIMQTSESGISAKS LRGRDSTRKQDASEKDGGTRGRRCAIEADMKMKK hide sequence

RefSeq Acc Id:

ENSRNOP00000069953 ⟸ ENSRNOT00000087968

RefSeq Acc Id:

ENSRNOP00000050917 ⟸ ENSRNOT00000048752

RefSeq Acc Id:	XP_038952653 ⟸ XM_039096725
- Peptide Label:	isoform X5
- UniProtKB:	E9PTN1 (UniProtKB/TrEMBL), A0A0G2JWN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000076361 ⟸ ENSRNOT00000115227

RefSeq Acc Id:

ENSRNOP00000095490 ⟸ ENSRNOT00000101754

RefSeq Acc Id:

ENSRNOP00000076647 ⟸ ENSRNOT00000118939

RefSeq Acc Id:

ENSRNOP00000095492 ⟸ ENSRNOT00000106891

RefSeq Acc Id:

ENSRNOP00000033259 ⟸ ENSRNOT00000034385

RefSeq Acc Id:	NP_001401339 ⟸ NM_001414410
- Peptide Label:	isoform 1

RefSeq Acc Id:	XP_063133295 ⟸ XM_063277225
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063133294 ⟸ XM_063277224
- Peptide Label:	isoform X2
- UniProtKB:	F1M858 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133293 ⟸ XM_063277223
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063133304 ⟸ XM_063277234
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063133303 ⟸ XM_063277233
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063133299 ⟸ XM_063277229
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063133298 ⟸ XM_063277228
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AR97 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133297 ⟸ XM_063277227
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XUT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133296 ⟸ XM_063277226
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063133301 ⟸ XM_063277231
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063133302 ⟸ XM_063277232
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063133300 ⟸ XM_063277230
- Peptide Label:	isoform X11

Protein Domains

Bromo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M858-F1-model_v2	AlphaFold	F1M858	1-272	view protein structure
AF-E9PTN1-F1-model_v2	AlphaFold	E9PTN1	1-957	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700696

Promoter ID:

EPDNEW_R11219

Type:

multiple initiation site

Name:

Brd8_1

Description:

bromodomain containing 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	27,423,912 - 27,423,972	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307003	AgrOrtholog
BioCyc Gene	G2FUF-7953	BioCyc
Ensembl Genes	ENSRNOG00000020340	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034385.6	UniProtKB/TrEMBL
	ENSRNOT00000048752.4	UniProtKB/TrEMBL
	ENSRNOT00000087968	ENTREZGENE
	ENSRNOT00000087968.2	UniProtKB/TrEMBL
	ENSRNOT00000101754	ENTREZGENE
	ENSRNOT00000101754.1	UniProtKB/TrEMBL
	ENSRNOT00000106891.1	UniProtKB/TrEMBL
	ENSRNOT00000115227.1	UniProtKB/TrEMBL
	ENSRNOT00000118939.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.920.10	UniProtKB/TrEMBL
InterPro	Brd8_Bromo_dom	UniProtKB/TrEMBL
	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
KEGG Report	rno:291691	UniProtKB/TrEMBL
NCBI Gene	291691	ENTREZGENE
PANTHER	BROMODOMAIN-CONTAINING PROTEIN 8	UniProtKB/TrEMBL
	BROMODOMAIN-CONTAINING PROTEIN 8	UniProtKB/TrEMBL
Pfam	Bromodomain	UniProtKB/TrEMBL
PhenoGen	Brd8	PhenoGen
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020340	RatGTEx
SMART	BROMO	UniProtKB/TrEMBL
Superfamily-SCOP	Bromodomain	UniProtKB/TrEMBL
UniProt	A0A0G2JWN9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XUT9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y6W9_RAT	UniProtKB/TrEMBL
	A0A8I6AR97	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATL0	ENTREZGENE, UniProtKB/TrEMBL
	A6J2U9_RAT	UniProtKB/TrEMBL
	A6J2V0_RAT	UniProtKB/TrEMBL
	A6J2V1_RAT	UniProtKB/TrEMBL
	A6J2V2_RAT	UniProtKB/TrEMBL
	E9PTN1	ENTREZGENE, UniProtKB/TrEMBL
	F1M858	ENTREZGENE, UniProtKB/TrEMBL
	Q5TLG7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Brd8	bromodomain containing 8	Brd8_predicted	bromodomain containing 8 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Brd8_predicted	bromodomain containing 8 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

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