Rbmxl1 (Rbmx like 1) - Rat Genome Database

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Gene: Rbmxl1 (Rbmx like 1) Rattus norvegicus
Analyze
Symbol: Rbmxl1
Name: Rbmx like 1
RGD ID: 1306751
Description: Enables RNA binding activity. Involved in protein-containing complex assembly and regulation of mRNA splicing, via spliceosome. Part of supraspliceosomal complex. Human ortholog(s) of this gene implicated in X-linked mental retardation Gustavson type and syndromic X-linked intellectual disability Shashi type. Orthologous to human RBMXL1 (RBMX like 1) and RBMX (RNA binding motif protein X-linked); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heterogeneous nuclear ribonucleoprotein G; heterogeneous nuclear ribonucleoprotein G retrogene-like; hnRNP G; LOC307779; Rbmx; Rbmxrt; Rbmxrtl; RNA binding motif protein, X chromosome retrogene; RNA binding motif protein, X chromosome retrogene-like; RNA binding motif protein, X-linked-like 1; RNA-binding motif protein, X chromosome; RNA-binding motif protein, X chromosome retrogene; RNA-binding motif protein, X chromosome retrogene-like
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,312,176 - 46,315,802 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1946,311,280 - 46,327,195 (+)EnsemblGRCr8
mRatBN7.21929,407,902 - 29,411,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1936,255,618 - 36,259,193 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,909,490 - 36,913,065 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01939,158,601 - 39,162,176 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01933,081,473 - 33,084,988 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)Ensemblrn6Rnor6.0
Rnor_5.01943,973,668 - 43,977,183 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41931,310,317 - 31,313,892 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1928,906,579 - 28,910,137 (+)NCBICelera
RGSC_v3.11931,314,771 - 31,318,720 (+)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA. Heinrich B, etal., J Biol Chem. 2009 May 22;284(21):14303-15. Epub 2009 Mar 12.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors. Wang J, etal., J Neurochem. 2004 Mar;88(5):1078-90.
Additional References at PubMed
PMID:10716735   PMID:17188681   PMID:19403048   PMID:24625528   PMID:25931508   PMID:35352799  


Genomics

Comparative Map Data
Rbmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,312,176 - 46,315,802 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1946,311,280 - 46,327,195 (+)EnsemblGRCr8
mRatBN7.21929,407,902 - 29,411,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1936,255,618 - 36,259,193 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,909,490 - 36,913,065 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01939,158,601 - 39,162,176 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01933,081,473 - 33,084,988 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)Ensemblrn6Rnor6.0
Rnor_5.01943,973,668 - 43,977,183 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41931,310,317 - 31,313,892 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1928,906,579 - 28,910,137 (+)NCBICelera
RGSC_v3.11931,314,771 - 31,318,720 (+)NCBI
Cytogenetic Map19q11NCBI
RBMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38188,979,456 - 88,992,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl188,979,456 - 88,992,960 (-)Ensemblhg38GRCh38
GRCh37189,445,139 - 89,458,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,218,710 - 89,231,104 (-)NCBIBuild 36Build 36hg18NCBI36
Celera187,690,929 - 87,704,434 (-)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef187,562,493 - 87,576,019 (-)NCBIHuRef
CHM1_1189,560,200 - 89,573,685 (-)NCBICHM1_1
T2T-CHM13v2.0188,822,848 - 88,836,026 (-)NCBIT2T-CHM13v2.0
Rbmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,231,898 - 79,235,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,231,898 - 79,235,527 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38878,505,269 - 78,508,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,505,269 - 78,508,898 (-)Ensemblmm10GRCm38
MGSCv37881,029,168 - 81,032,827 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36881,401,341 - 81,405,000 (-)NCBIMGSCv36mm8
Celera882,781,894 - 82,785,553 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.04NCBI
RBMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,985,862 - 137,990,552 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,141,657 - 137,146,346 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0191,695,452 - 91,708,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RBMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12044,416,179 - 44,428,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603373,478,836 - 73,491,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rbmxl1
33 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:14
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000016184
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)194172060949971820Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat

Markers in Region
D19Got116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,406,060 - 29,406,201 (+)MAPPERmRatBN7.2
Rnor_6.01933,079,592 - 33,079,732NCBIRnor6.0
Rnor_5.01943,971,787 - 43,971,927UniSTSRnor5.0
RGSC_v3.41931,308,436 - 31,308,576UniSTSRGSC3.4
Celera1928,904,698 - 28,904,838UniSTS
Cytogenetic Map19q11UniSTS
UniSTS:479241  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,410,712 - 29,411,252 (+)MAPPERmRatBN7.2
Rnor_6.01933,084,184 - 33,084,723NCBIRnor6.0
Rnor_5.01943,976,379 - 43,976,918UniSTSRnor5.0
RGSC_v3.41931,313,088 - 31,313,627UniSTSRGSC3.4
Celera1928,909,333 - 28,909,872UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016184   ⟹   ENSRNOP00000016184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098054   ⟹   ENSRNOP00000079505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1946,311,280 - 46,318,861 (+)Ensembl
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129732   ⟹   ENSRNOP00000100651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1946,311,280 - 46,327,195 (+)Ensembl
RefSeq Acc Id: NM_001107420   ⟹   NP_001100890
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,312,225 - 46,315,800 (+)NCBI
mRatBN7.21929,407,942 - 29,411,517 (+)NCBI
Rnor_6.01933,081,473 - 33,084,988 (+)NCBI
Rnor_5.01943,973,668 - 43,977,183 (+)NCBI
RGSC_v3.41931,310,317 - 31,313,892 (+)RGD
Celera1928,906,579 - 28,910,137 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097729   ⟹   XP_038953657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,312,176 - 46,315,802 (+)NCBI
mRatBN7.21929,407,902 - 29,411,519 (+)NCBI
RefSeq Acc Id: XM_063278022   ⟹   XP_063134092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,313,074 - 46,315,802 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953657 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134092 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000100651
GenBank Protein P84586 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001100890   ⟸   NM_001107420
- UniProtKB: P84586 (UniProtKB/Swiss-Prot),   A6IYJ5 (UniProtKB/TrEMBL),   A0A8I6AKQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016184   ⟸   ENSRNOT00000016184
RefSeq Acc Id: XP_038953657   ⟸   XM_039097729
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZN66 (UniProtKB/TrEMBL),   A0A8I6AKQ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079505   ⟸   ENSRNOT00000098054
RefSeq Acc Id: XP_063134092   ⟸   XM_063278022
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000100651   ⟸   ENSRNOT00000129732
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P84586-F1-model_v2 AlphaFold P84586 1-388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306751 AgrOrtholog
BioCyc Gene G2FUF-5929 BioCyc
Ensembl Genes ENSRNOG00000012138 Ensembl
  ENSRNOG00000062375 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000129732 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM UniProtKB/Swiss-Prot
  RBM1CTR UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  RRM_dom_euk UniProtKB/Swiss-Prot
KEGG Report rno:307779 UniProtKB/Swiss-Prot
NCBI Gene 307779 ENTREZGENE
PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RBM1CTR UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbmxl1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012138 RatGTEx
  ENSRNOG00000062375 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I5ZN66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKQ4 ENTREZGENE, UniProtKB/TrEMBL
  A6IYJ5 ENTREZGENE, UniProtKB/TrEMBL
  P84586 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-06 Rbmxl1  Rbmx like 1  Rbmxl1  RBMX like 1  Name changed 629549 APPROVED
2018-05-04 Rbmxl1  RBMX like 1  Rbmxl1  RNA binding motif protein, X-linked-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-19 Rbmxl1  RNA binding motif protein, X-linked-like 1  Rbmxrtl  RNA binding motif protein, X chromosome retrogene-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-05 Rbmxrtl  RNA binding motif protein, X chromosome retrogene-like  Rbmxrt_predicted  RNA binding motif protein, X chromosome retrogene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Rbmxrt_predicted  RNA binding motif protein, X chromosome retrogene (predicted)      Symbol and Name status set to approved 70820 APPROVED