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Gene: Vstm2l (V-set and transmembrane domain containing 2 like) Rattus norvegicus

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Symbol:

Vstm2l

Name:

V-set and transmembrane domain containing 2 like

RGD ID:

1305725

Description:

Involved in negative regulation of neuron apoptotic process. Located in cytoplasm and extracellular region. Orthologous to human VSTM2L (V-set and transmembrane domain containing 2 like); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

gene model 691, (NCBI)-like; gene model 691,-like; LOC362255; RGD1305725; similar to chromosome 20 open reading frame 102

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,991,035 - 167,020,869 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	3	146,571,099 - 146,600,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,571,278 - 146,600,325 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	154,395,014 - 154,424,482 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,395,187 - 154,424,625 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	161,177,818 - 161,206,967 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	148,624,668 - 148,651,409 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	145,271,667 - 145,301,640 (+)	NCBI		Celera
RGSC_v3.1	3	148,530,610 - 148,557,362 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

calcitriol (ISO)

chromium(6+) (ISO)

ciguatoxin CTX1B (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

DDE (ISO)

doxorubicin (ISO)

gentamycin (EXP)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Nor-9-carboxy-delta9-THC (ISO)

okadaic acid (ISO)

paracetamol (EXP)

PCB138 (ISO)

pentanal (ISO)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP,ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of neuron apoptotic process (ISO)

Cellular Component

cytoplasm (ISO)

extracellular region (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	VSTM2L is a novel secreted antagonist of the neuroprotective peptide Humanin.	Rossini L, etal., FASEB J. 2011 Jun;25(6):1983-2000. doi: 10.1096/fj.10-163535. Epub 2011 Mar 10.

Genomics

Comparative Map Data

Vstm2l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,991,035 - 167,020,869 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	3	146,571,099 - 146,600,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,571,278 - 146,600,325 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	154,395,014 - 154,424,482 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,395,187 - 154,424,625 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	161,177,818 - 161,206,967 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	148,624,668 - 148,651,409 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	145,271,667 - 145,301,640 (+)	NCBI		Celera
RGSC_v3.1	3	148,530,610 - 148,557,362 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

VSTM2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	37,903,127 - 37,945,350 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	37,903,111 - 37,945,350 (+)	Ensembl			hg38	GRCh38
GRCh37	20	36,531,529 - 36,573,752 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	35,964,913 - 36,007,166 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	35,964,919 - 36,007,159	NCBI
Celera	20	33,238,553 - 33,280,802 (+)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	33,266,969 - 33,309,495 (+)	NCBI		HuRef
CHM1_1	20	36,434,291 - 36,476,782 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	39,627,202 - 39,669,657 (+)	NCBI		T2T-CHM13v2.0

Vstm2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	157,756,573 - 157,786,639 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	157,756,573 - 157,786,639 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	157,914,653 - 157,944,719 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	157,914,653 - 157,944,719 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	157,740,389 - 157,770,455 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	157,606,206 - 157,636,160 (+)	NCBI		MGSCv36	mm8
Celera	2	163,855,451 - 163,885,751 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	78.48	NCBI

Vstm2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	18,756,411 - 18,786,358 (-)	Ensembl
ChiLan1.0	NW_004955445	18,756,458 - 18,786,310 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSTM2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	43,629,437 - 43,670,812 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	43,622,543 - 43,663,906 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	34,223,796 - 34,266,260 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	35,365,536 - 35,379,672 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	35,362,246 - 35,378,574 (+)	Ensembl			panPan2	panpan1.1

VSTM2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	26,442,608 - 26,479,466 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	26,442,678 - 26,478,325 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	26,088,275 - 26,125,046 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	27,139,005 - 27,175,860 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	27,138,490 - 27,175,845 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	26,413,832 - 26,450,646 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	26,521,426 - 26,558,214 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	27,009,225 - 27,046,032 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vstm2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	175,338,530 - 175,371,324 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	3,378,124 - 3,411,206 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	3,378,160 - 3,410,957 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSTM2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	40,978,794 - 41,019,845 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	40,978,558 - 41,019,847 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	46,335,428 - 46,433,682 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSTM2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	25,804,501 - 25,847,371 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	25,804,439 - 25,847,194 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	74,652,262 - 74,695,019 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vstm2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	1,708,665 - 1,740,393 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624842	1,708,658 - 1,740,438 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vstm2l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	137,256,992 - 137,286,464 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vstm2l
148 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	57
Count of miRNA genes:	50
Interacting mature miRNAs:	56
Transcripts:	ENSRNOT00000050810
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	160357340	167835660	Rat

Markers in Region

D3Rat5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	167,012,663 - 167,012,824 (+)	Marker Load Pipeline
mRatBN7.2	3	146,592,722 - 146,592,883 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,416,635 - 154,416,795	NCBI	Rnor6.0
Rnor_5.0	3	161,185,362 - 161,185,522	UniSTS	Rnor5.0
RGSC_v3.4	3	148,643,161 - 148,643,321	UniSTS	RGSC3.4
RGSC_v3.4	3	148,642,985 - 148,643,323	RGD	RGSC3.4
Celera	3	145,293,236 - 145,293,396	UniSTS
RGSC_v3.1	3	148,548,894 - 148,549,232	RGD
RH 3.4 Map	3	1356.4	UniSTS
RH 3.4 Map	3	1356.4	RGD
SHRSP x BN Map	3	73.2599	RGD
SHRSP x BN Map	3	73.2599	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH133129

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,600,680 - 146,600,890 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,424,714 - 154,424,923	NCBI	Rnor6.0
Rnor_5.0	3	161,177,234 - 161,177,443	UniSTS	Rnor5.0
RGSC_v3.4	3	148,651,765 - 148,651,974	UniSTS	RGSC3.4
Celera	3	145,301,391 - 145,301,600	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	1	47	142	60	50	29	30	29	6	188	93	122	49	82	21	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_342561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050810 ⟹ ENSRNOP00000039977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,571,278 - 146,600,325 (+)	Ensembl
Rnor_6.0 Ensembl	3	154,395,187 - 154,424,625 (+)	Ensembl

RefSeq Acc Id:

XM_063285125 ⟹ XP_063141195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,991,035 - 167,020,869 (+)	NCBI

RefSeq Acc Id:

XM_342561 ⟹ XP_342562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,991,038 - 167,020,869 (+)	NCBI
mRatBN7.2	3	146,571,099 - 146,600,930 (+)	NCBI
Rnor_6.0	3	154,395,014 - 154,424,482 (+)	NCBI
Rnor_5.0	3	161,177,818 - 161,206,967 (-)	NCBI
RGSC_v3.4	3	148,624,668 - 148,651,409 (+)	RGD

Sequence:

show sequence

GCAGTCGGAGGCGGCGGGCTGGGCGTGCGCTCGCTGCCTGCAGCCGGGGCCGGGCCGGGGCCAG
CGGGAGAGGGCGGCGGCGGCGGCGCCGGGCAGGGCACGGCGGGCGCGGGCTCTGCGGGCTGCGG
AGCCCCGATGTGAGGCGGCGGCGCCCCCCGGCCGGAGCGCGCAGCATGGGGGCCCCGCTGGCCG
CGGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCGCCACGCGGCCCGC
AGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACTCTTCACAGAGACTCCCCATGAC
ATGACAGCTCGGACAGGCGAGGATGTGGAGATGGCTTGCTCCTTCCGAGGCAGCGGCTCCCCAT
CCTACTCACTGGAGATCCAGTGGTGGTACCTGCGAAGCCACCGGGACTGGACCGACAAGCAGAC
ATGGGCCTCCAACCAGCTAAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGATGCCACCAAAATA
AGTGTGGTCAAGGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCGCGGGTGAAGCCCA
CGGACGAAGGCACCTACGAGTGCCGCGTGATCGACTTCAGCGACGGCAAGGCCCGGCACCACAA
GGTCAAAGCCTACCTGCGAGTGCAGCCCGGGGAGAACTCGGTGCTGCAGCTGCCTGATGCGCCC
CCAGCCGCGCCCGCGCCGCCGCCCAAGCCCGGCCGGGAGCTGCGCAAGCGCTCTCTGCCCGAGG
CCTGCAGCCTGTAGCCCACCCGTCCCGCATGCAGTCCTCCTGGCCCTGTGGCGACGGCGGCAGA
GGAGTCCCGCGTGTGCTTTGCTTGCTTATCCCCCTCCCGGCTCCGCCTCTTGCACCCCGTCCTC
GCGGCCAGCCCCCTGGTGAGGAGCCGGGCCGGGGGGGGGG

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Protein Sequences


Protein RefSeqs	NP_001417672	(Get FASTA)	NCBI Sequence Viewer
	NP_001417673	(Get FASTA)	NCBI Sequence Viewer
	XP_063141195	(Get FASTA)	NCBI Sequence Viewer
	XP_342562	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_342562 ⟸ XM_342561

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAPLAAALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSF
RGSGSPSYSLEIQWWYLRSHRDWTDKQTWASNQLKASQQEDSGKDATKISVVKVVGSNISHKLR
LSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLQLPDAPPAAPAPPPKPGRELR
KRSLPEACSL

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Ensembl Acc Id:

ENSRNOP00000039977 ⟸ ENSRNOT00000050810

RefSeq Acc Id:	XP_063141195 ⟸ XM_063285125
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDJ6-F1-model_v2	AlphaFold	D3ZDJ6	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305725	AgrOrtholog
BioCyc Gene	G2FUF-47042	BioCyc
Ensembl Genes	ENSRNOG00000034031	Ensembl
NCBI Gene	362255	ENTREZGENE
PhenoGen	Vstm2l	PhenoGen
RatGTEx	ENSRNOG00000034031	RatGTEx
UniProt	D3ZDJ6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-29	Vstm2l	V-set and transmembrane domain containing 2 like	RGD1305725	similar to chromosome 20 open reading frame 102	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	RGD1305725	similar to chromosome 20 open reading frame 102	LOC100364559	gene model 691, (NCBI)-like	Data merged from RGD:2320801	1643240	APPROVED
2010-05-05	LOC100364559	gene model 691, (NCBI)-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1305725	similar to chromosome 20 open reading frame 102	RGD1305725_predicted	similar to chromosome 20 open reading frame 102 (predicted)	'predicted' is removed	2292626	APPROVED
2008-01-09	RGD1305725_predicted	similar to chromosome 20 open reading frame 102 (predicted)	LOC683938	similar to stromal cell derived factor receptor 1	Data merged from RGD:1596557	1643240	APPROVED
2006-11-20	LOC683938	similar to stromal cell derived factor receptor 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1305725_predicted	similar to chromosome 20 open reading frame 102 (predicted)	LOC362255_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362255_predicted	similar to chromosome 20 open reading frame 102 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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