Sgce (sarcoglycan, epsilon) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Sgce (sarcoglycan, epsilon) Rattus norvegicus
Analyze
Symbol: Sgce
Name: sarcoglycan, epsilon
RGD ID: 1303201
Description: Involved in kidney development and skeletal muscle tissue development. Predicted to be located in Golgi apparatus and dendrite membrane. Predicted to be part of sarcoglycan complex. Human ortholog(s) of this gene implicated in myoclonic dystonia 11. Orthologous to human SGCE (sarcoglycan epsilon); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: epsilon-sarcoglycan; epsilon-SG
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,738,066 - 33,808,907 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl433,737,814 - 33,808,908 (-)EnsemblGRCr8
mRatBN7.2432,771,477 - 32,842,238 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,771,477 - 32,842,254 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx437,734,525 - 37,805,283 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,660,647 - 33,731,410 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,066,413 - 32,137,152 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,726,140 - 29,769,902 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)Ensemblrn6Rnor6.0
Rnor_5.0429,634,749 - 29,678,914 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera428,302,370 - 28,347,652 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification of a prognostic 5-Gene expression signature for gastric cancer. Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cloning, developmental regulation and neural localization of rat epsilon-sarcoglycan. Xiao J and LeDoux MS, Brain Res Mol Brain Res 2003 Nov 26;119(2):132-43.
Additional References at PubMed
PMID:10481911   PMID:12477932   PMID:17200151   PMID:17993586   PMID:22894000  


Genomics

Comparative Map Data
Sgce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,738,066 - 33,808,907 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl433,737,814 - 33,808,908 (-)EnsemblGRCr8
mRatBN7.2432,771,477 - 32,842,238 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,771,477 - 32,842,254 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx437,734,525 - 37,805,283 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,660,647 - 33,731,410 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,066,413 - 32,137,152 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,726,140 - 29,769,902 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)Ensemblrn6Rnor6.0
Rnor_5.0429,634,749 - 29,678,914 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera428,302,370 - 28,347,652 (-)NCBICelera
Cytogenetic Map4q21NCBI
SGCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,584,980 - 94,656,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,524,204 - 94,656,572 (-)Ensemblhg38GRCh38
GRCh37794,214,292 - 94,285,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36794,052,472 - 94,123,457 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34793,859,192 - 93,930,129NCBI
Celera788,912,778 - 88,983,736 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,821,910 - 88,892,855 (-)NCBIHuRef
CHM1_1794,144,608 - 94,215,565 (-)NCBICHM1_1
T2T-CHM13v2.0795,820,944 - 95,892,057 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,543,689 - 93,614,670 (-)NCBI
Sgce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,674,350 - 4,747,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3864,674,350 - 4,747,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,674,350 - 4,747,207 (-)Ensemblmm10GRCm38
MGSCv3764,624,350 - 4,697,204 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3664,624,350 - 4,697,099 (-)NCBIMGSCv36mm8
Celera64,817,452 - 4,890,164 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Sgce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,310,129 - 11,383,803 (-)Ensembl
ChiLan1.0NW_00495543211,310,488 - 11,383,803 (-)NCBIChiLan1.0ChiLan1.0
SGCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,422,961 - 112,493,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,687,603 - 160,758,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,535,215 - 86,606,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,125,064 - 100,195,529 (-)NCBIPanPan1.1PanPan1.1panPan2
SGCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,052,778 - 20,121,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,052,776 - 20,121,193 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1419,612,107 - 19,680,546 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01419,868,233 - 19,936,707 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,868,231 - 19,936,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,019,938 - 20,088,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,754,979 - 19,823,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,012,325 - 20,081,034 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sgce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,342,895 - 33,411,936 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365855,450,888 - 5,522,571 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365855,451,312 - 5,520,391 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,402,717 - 74,473,910 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1974,402,714 - 74,473,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,600,726 - 81,642,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,385,253 - 54,456,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2154,385,262 - 54,457,302 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604249,866,278 - 49,937,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,357,927 - 1,432,381 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248131,361,764 - 1,431,889 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sgce
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16133,867,564 - 133,923,236 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sgce
498 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:116
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000074177
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43353881653719714Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH143620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2432,796,018 - 32,796,188 (+)MAPPERmRatBN7.2
Rnor_6.0429,750,200 - 29,750,369NCBIRnor6.0
Rnor_5.0429,658,604 - 29,658,773UniSTSRnor5.0
Celera428,326,568 - 28,326,737UniSTS
RH 3.4 Map4811.43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 57 59 6 321 157 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001002023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY164274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000074177   ⟹   ENSRNOP00000064432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,738,068 - 33,808,908 (-)Ensembl
mRatBN7.2 Ensembl432,771,477 - 32,842,209 (-)Ensembl
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100248   ⟹   ENSRNOP00000091800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,737,814 - 33,808,788 (-)Ensembl
mRatBN7.2 Ensembl432,771,497 - 32,842,199 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103566   ⟹   ENSRNOP00000094451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,738,068 - 33,808,869 (-)Ensembl
mRatBN7.2 Ensembl432,771,481 - 32,842,189 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108812   ⟹   ENSRNOP00000089367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,737,814 - 33,808,788 (-)Ensembl
mRatBN7.2 Ensembl432,771,482 - 32,842,254 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119838   ⟹   ENSRNOP00000085107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,741,035 - 33,808,788 (-)Ensembl
mRatBN7.2 Ensembl432,771,600 - 32,842,172 (-)Ensembl
RefSeq Acc Id: NM_001002023   ⟹   NP_001002023
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,788 (-)NCBI
mRatBN7.2432,771,477 - 32,842,203 (-)NCBI
Rnor_6.0429,726,140 - 29,769,902 (-)NCBI
Rnor_5.0429,634,749 - 29,678,914 (-)NCBI
Celera428,302,370 - 28,347,652 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107988   ⟹   XP_038963916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107990   ⟹   XP_038963918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107991   ⟹   XP_038963919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,741,020 - 33,808,820 (-)NCBI
mRatBN7.2432,774,431 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107992   ⟹   XP_038963920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,839 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107993   ⟹   XP_038963921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,845 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107994   ⟹   XP_038963922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,875 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107995   ⟹   XP_038963923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,907 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107997   ⟹   XP_038963925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107998   ⟹   XP_038963926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_063286430   ⟹   XP_063142500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,741,003 - 33,808,835 (-)NCBI
RefSeq Acc Id: XM_063286431   ⟹   XP_063142501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,875 (-)NCBI
RefSeq Acc Id: XM_063286432   ⟹   XP_063142502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,819 (-)NCBI
RefSeq Acc Id: XM_063286433   ⟹   XP_063142503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,819 (-)NCBI
RefSeq Acc Id: NP_001002023   ⟸   NM_001002023
- UniProtKB: Q6YAT4 (UniProtKB/Swiss-Prot),   A0A8I6GCG9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064432   ⟸   ENSRNOT00000074177
RefSeq Acc Id: XP_038963926   ⟸   XM_039107998
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963925   ⟸   XM_039107997
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963921   ⟸   XM_039107993
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AGU2 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963918   ⟸   XM_039107990
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963916   ⟸   XM_039107988
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963923   ⟸   XM_039107995
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963922   ⟸   XM_039107994
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AA37 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963920   ⟸   XM_039107992
- Peptide Label: isoform X6
- UniProtKB: M0R4Y0 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963919   ⟸   XM_039107991
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094451   ⟸   ENSRNOT00000103566
Ensembl Acc Id: ENSRNOP00000091800   ⟸   ENSRNOT00000100248
Ensembl Acc Id: ENSRNOP00000085107   ⟸   ENSRNOT00000119838
Ensembl Acc Id: ENSRNOP00000089367   ⟸   ENSRNOT00000108812
RefSeq Acc Id: XP_063142501   ⟸   XM_063286431
- Peptide Label: isoform X11
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142503   ⟸   XM_063286433
- Peptide Label: isoform X13
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142502   ⟸   XM_063286432
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AKU0 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142500   ⟸   XM_063286430
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
Protein Domains
Dystroglycan-type cadherin-like   Sarcoglycan alpha/epsilon N-terminal   Sarcoglycan alpha/epsilon second

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6YAT4-F1-model_v2 AlphaFold Q6YAT4 1-437 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303201 AgrOrtholog
BioCyc Gene G2FUF-45717 BioCyc
Ensembl Genes ENSRNOG00000046905 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000074177 ENTREZGENE
  ENSRNOT00000100248 ENTREZGENE
  ENSRNOT00000103566 ENTREZGENE
  ENSRNOT00000108812 ENTREZGENE
  ENSRNOT00000119838 ENTREZGENE
IMAGE_CLONE IMAGE:7311584 IMAGE-MGC_LOAD
InterPro Cadg UniProtKB/Swiss-Prot
  Sarcoglycan_alpha/epsilon UniProtKB/Swiss-Prot
  Sarcoglycan_C UniProtKB/Swiss-Prot
  Sarcoglycan_N UniProtKB/Swiss-Prot
KEGG Report rno:432360 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109266 IMAGE-MGC_LOAD
NCBI Gene 432360 ENTREZGENE
PANTHER PTHR10132 UniProtKB/Swiss-Prot
  PTHR10132:SF17 UniProtKB/Swiss-Prot
Pfam Sarcoglycan_2 UniProtKB/Swiss-Prot
  Sarcoglycan_2_C UniProtKB/Swiss-Prot
PhenoGen Sgce PhenoGen
RatGTEx ENSRNOG00000046905 RatGTEx
SMART CADG UniProtKB/Swiss-Prot
UniProt A0A8I6AA37 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GCG9 ENTREZGENE, UniProtKB/TrEMBL
  A6IDR9_RAT UniProtKB/TrEMBL
  A6IDS0_RAT UniProtKB/TrEMBL
  A6IDS1_RAT UniProtKB/TrEMBL
  M0R4Y0 ENTREZGENE, UniProtKB/TrEMBL
  Q6YAT4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-14 Sgce  sarcoglycan, epsilon      Symbol and Name status set to provisional 70820 PROVISIONAL