Txndc8 (thioredoxin domain containing 8) - Rat Genome Database

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Gene: Txndc8 (thioredoxin domain containing 8) Rattus norvegicus
Analyze
Symbol: Txndc8
Name: thioredoxin domain containing 8
RGD ID: 1303121
Description: Involved in acrosome assembly. Located in acrosomal vesicle and sperm flagellum. Orthologous to human TXNDC8 (thioredoxin domain containing 8); INTERACTS WITH bisphenol A; indole-3-methanol; N-acetyl-L-cysteine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: spermatid-specific thioredoxin-3; spermatocyte/spermatid-specific thioredoxin-3; sptrx-3; Sptrx3; thioredoxin domain-containing protein 8
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,544,828 - 77,580,977 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,544,828 - 77,582,693 (-)EnsemblGRCr8
mRatBN7.2572,749,708 - 72,785,858 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,749,725 - 72,785,931 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx574,640,886 - 74,670,642 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,462,495 - 76,492,251 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,434,629 - 76,464,385 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0575,088,063 - 75,116,427 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,088,050 - 75,116,490 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,238,776 - 79,271,622 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4575,959,546 - 75,995,298 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,595,073 - 71,624,885 (-)NCBICelera
RGSC_v3.1575,964,658 - 76,000,411 (-)NCBI
Cytogenetic Map5q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
acrosomal vesicle  (IDA,IEA,ISO)
cytoplasm  (IEA,ISO)
Golgi apparatus  (IBA,IEA,ISO)
sperm flagellum  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Spermatocyte/spermatid-specific thioredoxin-3, a novel Golgi apparatus-associated thioredoxin, is a specific marker of aberrant spermatogenesis. Jimenez A, etal., J Biol Chem 2004 Aug 13;279(33):34971-82. Epub 2004 Jun 04.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:23734172  


Genomics

Comparative Map Data
Txndc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,544,828 - 77,580,977 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,544,828 - 77,582,693 (-)EnsemblGRCr8
mRatBN7.2572,749,708 - 72,785,858 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl572,749,725 - 72,785,931 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx574,640,886 - 74,670,642 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,462,495 - 76,492,251 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,434,629 - 76,464,385 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0575,088,063 - 75,116,427 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,088,050 - 75,116,490 (-)Ensemblrn6Rnor6.0
Rnor_5.0579,238,776 - 79,271,622 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4575,959,546 - 75,995,298 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,595,073 - 71,624,885 (-)NCBICelera
RGSC_v3.1575,964,658 - 76,000,411 (-)NCBI
Cytogenetic Map5q24NCBI
TXNDC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389110,301,231 - 110,337,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9110,303,476 - 110,337,891 (-)Ensemblhg38GRCh38
GRCh379113,065,756 - 113,100,143 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369112,105,688 - 112,139,909 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349110,145,423 - 110,179,643NCBI
Celera983,567,488 - 83,601,762 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef982,667,542 - 82,701,767 (-)NCBIHuRef
CHM1_19113,212,292 - 113,246,546 (-)NCBICHM1_1
T2T-CHM13v2.09122,470,769 - 122,507,369 (-)NCBIT2T-CHM13v2.0
Txndc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39457,984,029 - 58,009,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl457,984,027 - 58,009,124 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38457,984,021 - 58,009,135 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl457,984,027 - 58,009,124 (-)Ensemblmm10GRCm38
MGSCv37457,996,901 - 58,021,996 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36458,078,083 - 58,103,178 (-)NCBIMGSCv36mm8
Celera457,896,539 - 57,921,672 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.87NCBI
TXNDC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21129,069,045 - 29,103,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1929,071,423 - 29,105,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0981,458,398 - 81,492,855 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19109,624,764 - 109,658,849 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9109,624,698 - 109,658,849 (-)EnsemblpanPan2panpan1.1
TXN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11165,228,807 - 65,291,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1163,631,277 - 63,644,541 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01166,358,340 - 66,371,746 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,356,830 - 66,371,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,877,807 - 64,891,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,899,381 - 64,912,798 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,589,846 - 65,603,251 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101956962
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947180,484,872 - 180,516,612 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365592,753,167 - 2,765,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXNDC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,311,119 - 251,340,988 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,312,120 - 251,340,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,054,373 - 282,086,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219026
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11229,215,704 - 29,250,207 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603513,515,627 - 13,550,163 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txndc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247581,219,268 - 1,277,307 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Txndc8
172 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:27
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000042788
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 3 8 10 10 4 5 4 1 18 7 5 1 23 6

Sequence


Ensembl Acc Id: ENSRNOT00000042788   ⟹   ENSRNOP00000041009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl577,544,828 - 77,582,693 (-)Ensembl
mRatBN7.2 Ensembl572,749,725 - 72,785,931 (-)Ensembl
Rnor_6.0 Ensembl575,088,050 - 75,116,490 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096696   ⟹   ENSRNOP00000083038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl577,544,828 - 77,579,459 (-)Ensembl
mRatBN7.2 Ensembl572,749,725 - 72,784,340 (-)Ensembl
RefSeq Acc Id: NM_001004092   ⟹   NP_001004092
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8577,544,828 - 77,580,977 (-)NCBI
mRatBN7.2572,749,708 - 72,785,858 (-)NCBI
Rnor_6.0575,088,071 - 75,116,427 (-)NCBI
Rnor_5.0579,238,776 - 79,271,622 (-)NCBI
RGSC_v3.4575,959,546 - 75,995,298 (-)RGD
Celera571,595,073 - 71,624,885 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001004092 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS77224 (Get FASTA)   NCBI Sequence Viewer  
  EDL91663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041009
GenBank Protein Q69AB1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001004092   ⟸   NM_001004092
- UniProtKB: Q69AB1 (UniProtKB/Swiss-Prot),   A0A8L2QK05 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041009   ⟸   ENSRNOT00000042788
Ensembl Acc Id: ENSRNOP00000083038   ⟸   ENSRNOT00000096696
Protein Domains
Thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69AB1-F1-model_v2 AlphaFold Q69AB1 1-127 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693763
Promoter ID:EPDNEW_R4288
Type:initiation region
Name:Txndc8_1
Description:thioredoxin domain containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0575,116,496 - 75,116,556EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303121 AgrOrtholog
BioCyc Gene G2FUF-41190 BioCyc
Ensembl Genes ENSRNOG00000029073 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000042788 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
InterPro Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Thioredoxin_CS UniProtKB/Swiss-Prot
  Thioredoxin_domain UniProtKB/Swiss-Prot
KEGG Report rno:362525 UniProtKB/Swiss-Prot
NCBI Gene 362525 ENTREZGENE
PANTHER THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam Thioredoxin UniProtKB/Swiss-Prot
PhenoGen Txndc8 PhenoGen
PRINTS THIOREDOXIN UniProtKB/Swiss-Prot
PROSITE THIOREDOXIN_1 UniProtKB/Swiss-Prot
  THIOREDOXIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000029073 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
UniProt A0A8I5ZW40_RAT UniProtKB/TrEMBL
  A0A8L2QK05 ENTREZGENE, UniProtKB/TrEMBL
  A6KDU2_RAT UniProtKB/TrEMBL
  Q69AB1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Txndc8  thioredoxin domain containing 8  Sptrx3  spermatocyte/spermatid-specific thioredoxin-3  Symbol and Name updated 1299863 APPROVED