Rpl35 (ribosomal protein L35) - Rat Genome Database

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Gene: Rpl35 (ribosomal protein L35) Rattus norvegicus
Analyze
Symbol: Rpl35 (Ensembl: LOC120093238)
Name: ribosomal protein L35 (Ensembl:60S ribosomal protein L35-like)
RGD ID: 1303007
Description: Enables ribonucleoprotein complex binding activity. Involved in cellular response to UV-B. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 19. Orthologous to human RPL35 (ribosomal protein L35); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L35; large ribosomal subunit protein uL29; MGC72958; similar to 60S RIBOSOMAL PROTEIN L35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl35-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,162,960 - 43,166,485 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,162,764 - 43,165,947 (-)EnsemblGRCr8
mRatBN7.2322,753,255 - 22,756,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,753,253 - 22,756,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,221,740 - 26,224,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,806,724 - 34,809,683 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,619,424 - 32,622,385 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,294,813 - 23,297,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,516,639 - 28,519,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,787,991 - 18,790,952 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,186,541 - 21,189,502 (-)NCBICelera
RGSC_v3.1318,684,363 - 18,687,324 (-)NCBI
Cytogenetic Map3q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein S3. Chan YL, etal., Arch Biochem Biophys 1990 Dec;283(2):546-50.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Binding of rat ribosomal proteins to yeast 5.8S ribosomal ribonucleic acid. Lee JC and Henry B, Nucleic Acids Res. 1982 Apr 10;10(7):2199-207.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. UVB and gamma-radiation induce the expression of mRNAs encoding the ribosomal subunit L13A in rat keratinocytes. Shahmolky N, etal., Photochem Photobiol. 1999 Sep;70(3):341-7.
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. The primary structure of rat ribosomal protein L35. Suzuki K, etal., Biochem Biophys Res Commun 1990 Mar 30;167(3):1377-82.
13. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12962325   PMID:15489334   PMID:19946888   PMID:22658674   PMID:24930395  


Genomics

Comparative Map Data
Rpl35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,162,960 - 43,166,485 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl343,162,764 - 43,165,947 (-)EnsemblGRCr8
mRatBN7.2322,753,255 - 22,756,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,753,253 - 22,756,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx326,221,740 - 26,224,699 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,806,724 - 34,809,683 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,619,424 - 32,622,385 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,294,813 - 23,297,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,516,639 - 28,519,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,787,991 - 18,790,952 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera321,186,541 - 21,189,502 (-)NCBICelera
RGSC_v3.1318,684,363 - 18,687,324 (-)NCBI
Cytogenetic Map3q12NCBI
RPL35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,857,883 - 124,861,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,857,873 - 124,862,017 (-)Ensemblhg38GRCh38
GRCh379127,620,162 - 127,624,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,659,979 - 126,664,061 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349124,699,716 - 124,703,794NCBI
Celera998,268,108 - 98,272,188 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,232,652 - 97,236,731 (-)NCBIHuRef
CHM1_19127,768,933 - 127,773,012 (-)NCBICHM1_1
T2T-CHM13v2.09137,056,193 - 137,060,265 (-)NCBIT2T-CHM13v2.0
Rpl35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,891,593 - 38,895,143 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,891,592 - 38,895,636 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38239,001,581 - 39,005,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,001,580 - 39,005,624 (-)Ensemblmm10GRCm38
MGSCv37238,857,101 - 38,860,651 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36238,823,590 - 38,827,140 (-)NCBIMGSCv36mm8
Celera240,727,327 - 40,730,877 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Rpl35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,371,109 - 3,374,555 (+)Ensembl
ChiLan1.0NW_0049554193,371,109 - 3,374,555 (+)NCBIChiLan1.0ChiLan1.0
RPL35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,496,403 - 14,500,576 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,498,747 - 14,502,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,978,395 - 95,982,568 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,496,145 - 124,500,272 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,496,145 - 124,500,271 (-)EnsemblpanPan2panpan1.1
RPL35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,153,433 - 58,158,597 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,153,260 - 58,162,327 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha957,352,267 - 57,357,435 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0959,073,884 - 59,079,057 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,073,977 - 59,079,245 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,832,868 - 57,838,032 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,148,479 - 58,153,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,239,419 - 58,244,781 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,287,716 - 193,292,432 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,053,507 - 13,061,147 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,056,243 - 13,060,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,636,637 - 265,645,593 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11265,637,266 - 265,642,278 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,462,244 - 299,467,299 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,276,525 - 13,290,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660792,812,050 - 2,817,012 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,333,320 - 10,337,130 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476010,333,275 - 10,337,130 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl35
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1516,749,651 - 16,752,584 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl35
9 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:84
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000019162
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_212511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X51705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019162   ⟹   ENSRNOP00000019162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl343,162,764 - 43,165,947 (-)Ensembl
mRatBN7.2 Ensembl322,753,253 - 22,756,228 (-)Ensembl
Rnor_6.0 Ensembl323,294,814 - 23,297,774 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106095   ⟹   ENSRNOP00000077178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,754,081 - 22,756,243 (-)Ensembl
RefSeq Acc Id: NM_212511   ⟹   NP_997676
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,162,960 - 43,165,921 (-)NCBI
mRatBN7.2322,753,255 - 22,756,217 (-)NCBI
Rnor_6.0323,294,813 - 23,297,774 (-)NCBI
Rnor_5.0328,516,639 - 28,519,600 (-)NCBI
RGSC_v3.4318,787,991 - 18,790,952 (-)RGD
Celera321,186,541 - 21,189,502 (-)RGD
Sequence:
RefSeq Acc Id: XM_063283528   ⟹   XP_063139598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,162,960 - 43,166,485 (-)NCBI
Protein Sequences
Protein RefSeqs NP_997676 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139598 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58499 (Get FASTA)   NCBI Sequence Viewer  
  CAA36001 (Get FASTA)   NCBI Sequence Viewer  
  EDM00503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019162
GenBank Protein P17078 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_997676   ⟸   NM_212511
- UniProtKB: P17078 (UniProtKB/Swiss-Prot),   A6JEV9 (UniProtKB/TrEMBL),   A0A8L2UJE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019162   ⟸   ENSRNOT00000019162
Ensembl Acc Id: ENSRNOP00000077178   ⟸   ENSRNOT00000106095
RefSeq Acc Id: XP_063139598   ⟸   XM_063283528
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y7I3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17078-F1-model_v2 AlphaFold P17078 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692055
Promoter ID:EPDNEW_R2580
Type:multiple initiation site
Name:Rpl35_1
Description:ribosomal protein L35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0323,297,780 - 23,297,840EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303007 AgrOrtholog
BioCyc Gene G2FUF-49886 BioCyc
Ensembl Genes ENSRNOG00000014272 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000019162 ENTREZGENE
Gene3D-CATH 1.10.287.310 UniProtKB/Swiss-Prot
  6.10.250.3450 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919623 IMAGE-MGC_LOAD
InterPro Ribosomal_L29/L35 UniProtKB/Swiss-Prot
  Ribosomal_L29/L35_sf UniProtKB/Swiss-Prot
  Ribosomal_L29_CS UniProtKB/Swiss-Prot
  RL35 UniProtKB/Swiss-Prot
KEGG Report rno:296709 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72958 IMAGE-MGC_LOAD
NCBI Gene 296709 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL29 UniProtKB/Swiss-Prot
  PTHR45722 UniProtKB/Swiss-Prot
Pfam Ribosomal_L29 UniProtKB/Swiss-Prot
PhenoGen Rpl35 PhenoGen
PROSITE RIBOSOMAL_L29 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014272 RatGTEx
Superfamily-SCOP SSF46561 UniProtKB/Swiss-Prot
UniProt A0A8I5Y7I3 ENTREZGENE
  A0A8L2UJE8 ENTREZGENE, UniProtKB/TrEMBL
  A6JEV9 ENTREZGENE, UniProtKB/TrEMBL
  P17078 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-04-21 Rpl35  ribosomal protein L35  MGC72958  similar to 60S RIBOSOMAL PROTEIN L35  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-02-14 MGC72958  similar to 60S RIBOSOMAL PROTEIN L35      Symbol and Name status set to provisional 70820 PROVISIONAL