Lmo7 (LIM domain 7) - Rat Genome Database

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Pathways
Gene: Lmo7 (LIM domain 7) Rattus norvegicus
Analyze
Symbol: Lmo7
Name: LIM domain 7
RGD ID: 1302984
Description: Enables actinin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in adherens junction and apical plasma membrane. Orthologous to human LMO7 (LIM domain 7); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LIM domain only 7; LIM domain only protein 7; TGF-beta induced protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81584,981,689 - 85,184,554 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1584,981,735 - 85,184,551 (+)EnsemblGRCr8
mRatBN7.21578,566,999 - 78,769,833 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1578,567,023 - 78,769,783 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1582,584,378 - 82,786,313 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01583,660,934 - 83,862,788 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01580,581,526 - 80,790,426 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01586,242,911 - 86,458,512 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensemblrn6Rnor6.0
Rnor_5.01587,780,294 - 87,997,103 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41585,710,975 - 85,928,469 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1577,758,335 - 77,960,326 (+)NCBICelera
RGSC_v3.11585,726,754 - 85,944,249 (+)NCBI
Cytogenetic Map15q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcium silicate  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dibenzofurans  (ISO)
Dibutyl phosphate  (ISO)
diethyl maleate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flurbiprofen  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
geldanamycin  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
levofloxacin  (EXP)
mercury dibromide  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
morphine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nicotine  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Lmo7 is an emerin-binding protein that regulates the transcription of emerin and many other muscle-relevant genes. Holaska JM, etal., Hum Mol Genet. 2006 Dec 1;15(23):3459-72. doi: 10.1093/hmg/ddl423. Epub 2006 Oct 26.
3. Involvement of LMO7 in the association of two cell-cell adhesion molecules, nectin and E-cadherin, through afadin and alpha-actinin in epithelial cells. Ooshio T, etal., J Biol Chem 2004 Jul 23;279(30):31365-73. Epub 2004 May 12.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15737692   PMID:19028597   PMID:19215226   PMID:21423176   PMID:21525034   PMID:24625528   PMID:25002582   PMID:26370512   PMID:30361391   PMID:34800366   PMID:35352799  


Genomics

Comparative Map Data
Lmo7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81584,981,689 - 85,184,554 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1584,981,735 - 85,184,551 (+)EnsemblGRCr8
mRatBN7.21578,566,999 - 78,769,833 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1578,567,023 - 78,769,783 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1582,584,378 - 82,786,313 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01583,660,934 - 83,862,788 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01580,581,526 - 80,790,426 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01586,242,911 - 86,458,512 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensemblrn6Rnor6.0
Rnor_5.01587,780,294 - 87,997,103 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41585,710,975 - 85,928,469 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1577,758,335 - 77,960,326 (+)NCBICelera
RGSC_v3.11585,726,754 - 85,944,249 (+)NCBI
Cytogenetic Map15q21NCBI
LMO7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381375,620,434 - 75,859,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1375,620,434 - 75,859,870 (+)Ensemblhg38GRCh38
GRCh371376,194,570 - 76,434,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361375,092,571 - 75,332,003 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341375,092,570 - 75,332,002NCBI
Celera1357,092,445 - 57,331,882 (+)NCBICelera
Cytogenetic Map13q22.2NCBI
HuRef1356,891,721 - 57,131,153 (+)NCBIHuRef
CHM1_11376,162,285 - 76,401,623 (+)NCBICHM1_1
T2T-CHM13v2.01374,844,083 - 75,083,598 (+)NCBIT2T-CHM13v2.0
Lmo7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914101,967,353 - 102,172,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14101,967,386 - 102,172,146 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3814101,729,928 - 101,934,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14101,729,957 - 101,934,710 (+)Ensemblmm10GRCm38
MGSCv3714102,129,145 - 102,333,910 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3614100,616,519 - 100,821,316 (+)NCBIMGSCv36mm8
Celera14100,369,410 - 100,570,067 (+)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1450.9NCBI
Lmo7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540431,196,312 - 31,388,258 (-)Ensembl
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBIChiLan1.0ChiLan1.0
LMO7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21477,191,658 - 77,435,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11375,797,434 - 76,033,129 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01356,846,724 - 57,084,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11375,893,269 - 76,130,080 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1375,894,529 - 76,130,080 (+)EnsemblpanPan2panpan1.1
LMO7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12229,415,374 - 29,619,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2229,415,337 - 29,618,667 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2229,276,170 - 29,479,940 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02229,750,469 - 29,947,955 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2229,750,520 - 29,947,968 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12229,401,034 - 29,598,351 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02229,444,631 - 29,641,926 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02229,513,289 - 29,710,649 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lmo7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945129,875,508 - 130,083,555 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365115,292,748 - 5,392,313 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365115,292,737 - 5,501,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1148,072,159 - 48,133,446 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11147,911,076 - 48,133,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21152,681,961 - 52,709,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMO7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1354,647,783 - 54,954,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl354,736,294 - 54,957,721 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604610,866,306 - 11,099,634 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475124,637,354 - 24,855,450 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475124,636,636 - 24,855,515 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lmo7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11222,654,542 - 22,788,059 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lmo7
2059 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:87
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000032917
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1582194914108192169Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1574735564106469153Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1582503470108192169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1582714037106778197Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
7411646Foco21Food consumption QTL 2123.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1584278281108192169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1572716871101425383Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1575928947101425383Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1582194914108192169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156244089297773284Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1572716871101425383Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)158271393186775589Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1583700787108192169Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat

Markers in Region
BF413319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21578,727,873 - 78,727,965 (+)MAPPERmRatBN7.2
Rnor_6.01586,416,552 - 86,416,643NCBIRnor6.0
Rnor_5.01587,955,155 - 87,955,246UniSTSRnor5.0
RGSC_v3.41585,887,282 - 85,887,373UniSTSRGSC3.4
Celera1577,919,087 - 77,919,178UniSTS
RH 3.4 Map15545.6UniSTS
Cytogenetic Map15q21UniSTS
AI008211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21578,735,787 - 78,735,979 (+)MAPPERmRatBN7.2
Rnor_6.01586,424,465 - 86,424,656NCBIRnor6.0
Rnor_5.01587,963,068 - 87,963,259UniSTSRnor5.0
RGSC_v3.41585,895,195 - 85,895,386UniSTSRGSC3.4
Celera1577,927,000 - 77,927,191UniSTS
RH 3.4 Map15504.1UniSTS
Cytogenetic Map15q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY533473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY533474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY609384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084471   ⟹   ENSRNOP00000074706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1584,981,735 - 85,182,919 (+)Ensembl
mRatBN7.2 Ensembl1578,567,023 - 78,768,201 (+)Ensembl
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090727   ⟹   ENSRNOP00000071726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1584,981,782 - 85,182,919 (+)Ensembl
mRatBN7.2 Ensembl1578,567,023 - 78,768,201 (+)Ensembl
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095601   ⟹   ENSRNOP00000096784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1585,071,240 - 85,184,551 (+)Ensembl
mRatBN7.2 Ensembl1578,656,479 - 78,769,783 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117839   ⟹   ENSRNOP00000081200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1585,087,040 - 85,183,875 (+)Ensembl
mRatBN7.2 Ensembl1578,672,218 - 78,769,783 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118677   ⟹   ENSRNOP00000090858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1585,087,896 - 85,184,533 (+)Ensembl
mRatBN7.2 Ensembl1578,656,479 - 78,769,783 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120161   ⟹   ENSRNOP00000083331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1584,981,782 - 85,184,539 (+)Ensembl
mRatBN7.2 Ensembl1578,567,023 - 78,769,783 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000155353   ⟹   ENSRNOP00000106691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1585,087,040 - 85,183,875 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169669   ⟹   ENSRNOP00000110322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1584,981,735 - 85,184,551 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172039   ⟹   ENSRNOP00000107673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1584,981,735 - 85,184,551 (+)Ensembl
RefSeq Acc Id: NM_001001515   ⟹   NP_001001515
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,735 - 85,184,551 (+)NCBI
mRatBN7.21578,566,999 - 78,769,833 (+)NCBI
Rnor_6.01586,243,148 - 86,457,739 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
RGSC_v3.41585,710,975 - 85,928,469 (+)RGD
Celera1577,758,335 - 77,960,326 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415119   ⟹   NP_001402048
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,782 - 85,184,539 (+)NCBI
mRatBN7.21578,567,046 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_006252397   ⟹   XP_006252459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,033 - 78,769,821 (+)NCBI
Rnor_6.01586,242,911 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252400   ⟹   XP_006252462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,043 - 78,769,821 (+)NCBI
Rnor_6.01586,242,914 - 86,458,512 (+)NCBI
Rnor_5.01587,780,294 - 87,997,103 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599750   ⟹   XP_017455239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,032 - 78,769,821 (+)NCBI
Rnor_6.01586,242,911 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599751   ⟹   XP_017455240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
mRatBN7.21578,672,343 - 78,769,833 (+)NCBI
Rnor_6.01586,360,544 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599752   ⟹   XP_017455241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,071,192 - 85,184,554 (+)NCBI
mRatBN7.21578,656,475 - 78,769,833 (+)NCBI
Rnor_6.01586,345,190 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599753   ⟹   XP_017455242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,115,882 - 85,184,554 (+)NCBI
mRatBN7.21578,701,340 - 78,769,833 (+)NCBI
Rnor_6.01586,390,025 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599754   ⟹   XP_017455243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,042 - 78,769,821 (+)NCBI
Rnor_6.01586,242,914 - 86,458,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093520   ⟹   XP_038949448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,029 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093521   ⟹   XP_038949449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,029 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093522   ⟹   XP_038949450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,030 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093523   ⟹   XP_038949451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,032 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093524   ⟹   XP_038949452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,030 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093525   ⟹   XP_038949453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,031 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093527   ⟹   XP_038949455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
mRatBN7.21578,567,033 - 78,769,821 (+)NCBI
RefSeq Acc Id: XM_039093528   ⟹   XP_038949456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
mRatBN7.21578,672,347 - 78,769,833 (+)NCBI
RefSeq Acc Id: XM_039093530   ⟹   XP_038949458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
mRatBN7.21578,672,346 - 78,769,833 (+)NCBI
RefSeq Acc Id: XM_063274443   ⟹   XP_063130513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,733 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274444   ⟹   XP_063130514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274445   ⟹   XP_063130515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274446   ⟹   XP_063130516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274447   ⟹   XP_063130517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274448   ⟹   XP_063130518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274449   ⟹   XP_063130519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,087,546 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274450   ⟹   XP_063130520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,085,348 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274451   ⟹   XP_063130521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,089,199 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274453   ⟹   XP_063130523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,718 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274454   ⟹   XP_063130524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,725 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274455   ⟹   XP_063130525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274456   ⟹   XP_063130526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,689 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274457   ⟹   XP_063130527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274458   ⟹   XP_063130528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274459   ⟹   XP_063130529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,696 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274460   ⟹   XP_063130530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,689 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274461   ⟹   XP_063130531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274462   ⟹   XP_063130532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,086,414 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274463   ⟹   XP_063130533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,071,183 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274464   ⟹   XP_063130534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274465   ⟹   XP_063130535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,071,198 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274466   ⟹   XP_063130536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,071,183 - 85,184,554 (+)NCBI
RefSeq Acc Id: XM_063274467   ⟹   XP_063130537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81585,087,692 - 85,184,554 (+)NCBI
RefSeq Acc Id: XR_010057841
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81584,981,706 - 85,167,880 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001001515 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402048 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252459 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252462 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455239 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455240 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455241 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455242 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455243 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949448 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949449 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949450 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949451 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949452 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949453 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949455 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949458 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130513 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130514 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130515 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130516 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130517 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130518 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130519 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130520 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130521 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130523 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130524 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130525 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130526 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130527 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130528 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130529 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130530 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130531 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130532 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130533 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130534 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130535 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130536 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130537 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT02180 (Get FASTA)   NCBI Sequence Viewer  
  AAT02181 (Get FASTA)   NCBI Sequence Viewer  
  AAT37112 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071726.2
  ENSRNOP00000074706.2
  ENSRNOP00000081200
  ENSRNOP00000081200.1
  ENSRNOP00000083331
  ENSRNOP00000083331.1
  ENSRNOP00000090858
  ENSRNOP00000090858.2
  ENSRNOP00000096784
  ENSRNOP00000096784.1
  ENSRNOP00000106691
  ENSRNOP00000106691.1
  ENSRNOP00000107673
  ENSRNOP00000107673.1
  ENSRNOP00000110322.1
RefSeq Acc Id: NP_001001515   ⟸   NM_001001515
- Peptide Label: isoform 1
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252459   ⟸   XM_006252397
- Peptide Label: isoform X16
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252462   ⟸   XM_006252400
- Peptide Label: isoform X23
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455239   ⟸   XM_017599750
- Peptide Label: isoform X5
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455243   ⟸   XM_017599754
- Peptide Label: isoform X20
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455241   ⟸   XM_017599752
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455240   ⟸   XM_017599751
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455242   ⟸   XM_017599753
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074706   ⟸   ENSRNOT00000084471
Ensembl Acc Id: ENSRNOP00000071726   ⟸   ENSRNOT00000090727
RefSeq Acc Id: XP_038949449   ⟸   XM_039093521
- Peptide Label: isoform X3
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949448   ⟸   XM_039093520
- Peptide Label: isoform X2
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949450   ⟸   XM_039093522
- Peptide Label: isoform X4
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949452   ⟸   XM_039093524
- Peptide Label: isoform X9
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949453   ⟸   XM_039093525
- Peptide Label: isoform X10
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949451   ⟸   XM_039093523
- Peptide Label: isoform X6
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949455   ⟸   XM_039093527
- Peptide Label: isoform X15
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949458   ⟸   XM_039093530
- Peptide Label: isoform X36
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949456   ⟸   XM_039093528
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083331   ⟸   ENSRNOT00000120161
Ensembl Acc Id: ENSRNOP00000096784   ⟸   ENSRNOT00000095601
Ensembl Acc Id: ENSRNOP00000081200   ⟸   ENSRNOT00000117839
Ensembl Acc Id: ENSRNOP00000090858   ⟸   ENSRNOT00000118677
RefSeq Acc Id: NP_001402048   ⟸   NM_001415119
- Peptide Label: isoform 2
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL),   A0A8I5ZWT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130526   ⟸   XM_063274456
- Peptide Label: isoform X25
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130530   ⟸   XM_063274460
- Peptide Label: isoform X28
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130529   ⟸   XM_063274459
- Peptide Label: isoform X26
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130514   ⟸   XM_063274444
- Peptide Label: isoform X8
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130515   ⟸   XM_063274445
- Peptide Label: isoform X11
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130516   ⟸   XM_063274446
- Peptide Label: isoform X12
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130517   ⟸   XM_063274447
- Peptide Label: isoform X13
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130518   ⟸   XM_063274448
- Peptide Label: isoform X18
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130527   ⟸   XM_063274457
- Peptide Label: isoform X26
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130534   ⟸   XM_063274464
- Peptide Label: isoform X32
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130523   ⟸   XM_063274453
- Peptide Label: isoform X21
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130524   ⟸   XM_063274454
- Peptide Label: isoform X22
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130513   ⟸   XM_063274443
- Peptide Label: isoform X1
- UniProtKB: Q6JBI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130533   ⟸   XM_063274463
- Peptide Label: isoform X31
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130536   ⟸   XM_063274466
- Peptide Label: isoform X34
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130535   ⟸   XM_063274465
- Peptide Label: isoform X33
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130520   ⟸   XM_063274450
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130525   ⟸   XM_063274455
- Peptide Label: isoform X24
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130531   ⟸   XM_063274461
- Peptide Label: isoform X29
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130528   ⟸   XM_063274458
- Peptide Label: isoform X27
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130532   ⟸   XM_063274462
- Peptide Label: isoform X30
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL),   A0A8I5ZR48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130519   ⟸   XM_063274449
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130537   ⟸   XM_063274467
- Peptide Label: isoform X35
- UniProtKB: Q6JBI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130521   ⟸   XM_063274451
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AMI4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000106691   ⟸   ENSRNOT00000155353
Ensembl Acc Id: ENSRNOP00000110322   ⟸   ENSRNOT00000169669
Ensembl Acc Id: ENSRNOP00000107673   ⟸   ENSRNOT00000172039
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8R3-F1-model_v2 AlphaFold A0A0G2K8R3 1-1729 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302984 AgrOrtholog
BioCyc Gene G2FUF-12746 BioCyc
Ensembl Genes ENSRNOG00000060775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084471.3 UniProtKB/TrEMBL
  ENSRNOT00000090727.3 UniProtKB/TrEMBL
  ENSRNOT00000095601 ENTREZGENE
  ENSRNOT00000095601.2 UniProtKB/TrEMBL
  ENSRNOT00000117839 ENTREZGENE
  ENSRNOT00000117839.2 UniProtKB/TrEMBL
  ENSRNOT00000118677 ENTREZGENE
  ENSRNOT00000118677.2 UniProtKB/TrEMBL
  ENSRNOT00000120161 ENTREZGENE
  ENSRNOT00000120161.2 UniProtKB/TrEMBL
  ENSRNOT00000155353 ENTREZGENE
  ENSRNOT00000155353.1 UniProtKB/TrEMBL
  ENSRNOT00000169669.1 UniProtKB/TrEMBL
  ENSRNOT00000172039 ENTREZGENE
  ENSRNOT00000172039.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  DUF4757 UniProtKB/TrEMBL
  LMO-7 UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SM22_calponin UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report rno:361084 UniProtKB/TrEMBL
NCBI Gene 361084 ENTREZGENE
PANTHER LIM DOMAIN ONLY PROTEIN 7 UniProtKB/TrEMBL
  PTHR46767 UniProtKB/TrEMBL
Pfam DUF4757 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PhenoGen Lmo7 PhenoGen
PRINTS SM22CALPONIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000060775 RatGTEx
SMART LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
UniProt A0A0G2K174_RAT UniProtKB/TrEMBL
  A0A0G2K8R3_RAT UniProtKB/TrEMBL
  A0A8I5ZR48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAI2_RAT UniProtKB/TrEMBL
  A0A8I6AMI4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LLT9_RAT UniProtKB/TrEMBL
  A0ABK0LP56_RAT UniProtKB/TrEMBL
  A0ABK0LVK8_RAT UniProtKB/TrEMBL
  Q6JBI6 ENTREZGENE, UniProtKB/TrEMBL
  Q6JBI7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-14 Lmo7  LIM domain 7  Lmo7  LIM domain only 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Lmo7  LIM domain only 7  LMO7  LIM domain only protein 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 LMO7  LIM domain only protein 7      Symbol and Name status set to provisional 70820 PROVISIONAL