Lmo7 (LIM domain 7) - Rat Genome Database

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Gene: Lmo7 (LIM domain 7) Chinchilla lanigera
Analyze
Symbol: Lmo7
Name: LIM domain 7
RGD ID: 8900337
Description: ENCODES a protein that exhibits actinin binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); chromosome 13q14 deletion syndrome (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LIM domain only protein 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540431,196,312 - 31,388,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lmo7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540431,196,312 - 31,388,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBIChiLan1.0ChiLan1.0
LMO7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381375,620,434 - 75,859,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1375,620,434 - 75,859,870 (+)EnsemblGRCh38hg38GRCh38
GRCh371376,194,570 - 76,434,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361375,092,571 - 75,332,003 (+)NCBINCBI36Build 36hg18NCBI36
Build 341375,092,570 - 75,332,002NCBI
Celera1357,092,445 - 57,331,882 (+)NCBICelera
Cytogenetic Map13q22.2NCBI
HuRef1356,891,721 - 57,131,153 (+)NCBIHuRef
CHM1_11376,162,285 - 76,401,623 (+)NCBICHM1_1
T2T-CHM13v2.01374,844,083 - 75,083,598 (+)NCBIT2T-CHM13v2.0
Lmo7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914101,967,353 - 102,172,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14101,967,386 - 102,172,146 (+)EnsemblGRCm39 Ensembl
GRCm3814101,729,928 - 101,934,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14101,729,957 - 101,934,710 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714102,129,145 - 102,333,910 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614100,616,519 - 100,821,316 (+)NCBIMGSCv36mm8
Celera14100,369,410 - 100,570,067 (+)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1450.9NCBI
Lmo7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81584,981,689 - 85,184,554 (+)NCBIGRCr8
mRatBN7.21578,566,999 - 78,769,833 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1578,567,023 - 78,769,783 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1582,584,378 - 82,786,313 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01583,660,934 - 83,862,788 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01580,581,526 - 80,790,426 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01586,242,911 - 86,458,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1586,243,148 - 86,457,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01587,780,294 - 87,997,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41585,710,975 - 85,928,469 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11585,726,754 - 85,944,249 (+)NCBI
Celera1577,758,335 - 77,960,326 (+)NCBICelera
Cytogenetic Map15q21NCBI
LMO7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21477,191,658 - 77,435,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11375,797,434 - 76,033,129 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01356,846,724 - 57,084,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11375,893,269 - 76,130,080 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1375,894,529 - 76,130,080 (+)Ensemblpanpan1.1panPan2
LMO7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12229,415,374 - 29,619,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2229,415,337 - 29,618,667 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2229,276,170 - 29,479,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02229,750,469 - 29,947,955 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2229,750,520 - 29,947,968 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12229,401,034 - 29,598,351 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02229,444,631 - 29,641,926 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02229,513,289 - 29,710,649 (+)NCBIUU_Cfam_GSD_1.0
Lmo7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945129,875,508 - 130,083,555 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365115,292,737 - 5,501,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1148,072,159 - 48,133,446 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11147,911,076 - 48,133,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21152,681,961 - 52,709,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMO7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1354,647,783 - 54,954,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl354,736,294 - 54,957,721 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604610,866,306 - 11,099,634 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475124,637,354 - 24,855,450 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475124,636,636 - 24,855,515 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005374167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005374168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005374169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01004017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01004018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01064193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01082235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000011698   ⟹   ENSCLAP00000011561
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540431,196,312 - 31,250,428 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011699   ⟹   ENSCLAP00000011562
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540431,198,223 - 31,388,258 (-)Ensembl
RefSeq Acc Id: XM_005374167   ⟹   XP_005374224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374168   ⟹   XP_005374225
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374169   ⟹   XP_005374226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516543   ⟹   XP_013371997
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516544   ⟹   XP_013371998
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516549   ⟹   XP_013372003
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516551   ⟹   XP_013372005
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516553   ⟹   XP_013372007
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516561   ⟹   XP_013372015
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516563   ⟹   XP_013372017
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516566   ⟹   XP_013372020
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516569   ⟹   XP_013372023
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516572   ⟹   XP_013372026
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540431,197,156 - 31,388,571 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005374226   ⟸   XM_005374169
- Peptide Label: isoform X8
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374225   ⟸   XM_005374168
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374224   ⟸   XM_005374167
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372023   ⟸   XM_013516569
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_013372026   ⟸   XM_013516572
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_013372020   ⟸   XM_013516566
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_013372017   ⟸   XM_013516563
- Peptide Label: isoform X10
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372015   ⟸   XM_013516561
- Peptide Label: isoform X9
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371998   ⟸   XM_013516544
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372007   ⟸   XM_013516553
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372005   ⟸   XM_013516551
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372003   ⟸   XM_013516549
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371997   ⟸   XM_013516543
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VE10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011561   ⟸   ENSCLAT00000011698
RefSeq Acc Id: ENSCLAP00000011562   ⟸   ENSCLAT00000011699
Protein Domains
Calponin-homology (CH)   DUF4757   LIM zinc-binding   PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007971 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011698.1 UniProtKB/TrEMBL
  ENSCLAT00000011699 ENTREZGENE
  ENSCLAT00000011699.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  DUF4757 UniProtKB/TrEMBL
  LMO-7 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SM22_calponin UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Lmo7 ENTREZGENE
PANTHER LIM DOMAIN ONLY PROTEIN 7 UniProtKB/TrEMBL
  PTHR46767 UniProtKB/TrEMBL
Pfam DUF4757 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PRINTS SM22CALPONIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A8C2VBG3_CHILA UniProtKB/TrEMBL
  A0A8C2VE10 ENTREZGENE, UniProtKB/TrEMBL